Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00015 * 2 1 4 4 C 1.52999 * 109.47068 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47294 * 65.00040 * 4 3 2 6 6 C 1.36935 * 120.00342 * 270.00043 * 5 4 3 7 7 H 1.07997 * 120.00275 * 141.45088 * 6 5 4 8 8 C 1.38817 * 119.99678 * 321.45794 * 6 5 4 9 9 N 1.31620 * 119.99711 * 338.82771 * 8 6 5 10 10 Si 1.86797 * 119.99874 * 158.82749 * 8 6 5 11 11 H 1.48500 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47334 * 120.00003 * 10 8 6 13 13 H 1.48507 * 109.47093 * 239.99983 * 10 8 6 14 14 C 1.46500 * 119.99664 * 89.99564 * 5 4 3 15 15 C 1.52996 * 109.47413 * 264.70784 * 14 5 4 16 16 C 1.53003 * 109.47607 * 180.02562 * 15 14 5 17 17 O 1.42898 * 109.47516 * 180.02562 * 16 15 14 18 18 C 1.42892 * 113.99920 * 180.02562 * 17 16 15 19 19 C 1.54893 * 110.48994 * 93.24157 * 18 17 16 20 20 C 1.55230 * 102.58956 * 156.67296 * 19 18 17 21 21 C 1.54263 * 104.23493 * 322.08783 * 20 19 18 22 22 C 1.53870 * 106.60077 * 23.61017 * 21 20 19 23 23 H 1.08998 * 109.47143 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47178 * 300.00030 * 1 2 3 25 25 H 1.08998 * 109.46913 * 60.00203 * 1 2 3 26 26 H 1.08996 * 109.46971 * 59.99844 * 3 2 1 27 27 H 1.08996 * 109.47052 * 300.00042 * 3 2 1 28 28 H 1.08994 * 109.47094 * 305.00240 * 4 3 2 29 29 H 1.09000 * 109.47044 * 184.99708 * 4 3 2 30 30 H 0.97003 * 119.99266 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46899 * 144.71441 * 14 5 4 32 32 H 1.08997 * 109.47573 * 24.71302 * 14 5 4 33 33 H 1.09001 * 109.47287 * 60.00330 * 15 14 5 34 34 H 1.09005 * 109.47755 * 300.00591 * 15 14 5 35 35 H 1.09001 * 109.46760 * 59.99723 * 16 15 14 36 36 H 1.09005 * 109.46813 * 300.00883 * 16 15 14 37 37 H 1.09007 * 110.43861 * 330.70249 * 18 17 16 38 38 H 1.08996 * 110.75622 * 275.07239 * 19 18 17 39 39 H 1.09002 * 110.74884 * 38.43677 * 19 18 17 40 40 H 1.08998 * 110.47030 * 203.39621 * 20 19 18 41 41 H 1.09002 * 110.58290 * 80.83219 * 20 19 18 42 42 H 1.08998 * 110.03485 * 264.32321 * 21 20 19 43 43 H 1.09003 * 110.07291 * 142.91952 * 21 20 19 44 44 H 1.08997 * 110.03819 * 240.71721 * 22 21 20 45 45 H 1.09000 * 110.07858 * 119.30325 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0979 -0.7975 -1.3345 7 1 3.8085 -1.3108 -2.2396 8 6 4.5926 -1.5178 -0.2559 9 7 5.3194 -0.9144 0.6606 10 14 4.2266 -3.3433 -0.1052 11 1 3.3947 -3.7781 -1.2559 12 1 5.5014 -4.1050 -0.0997 13 1 3.4922 -3.5982 1.1602 14 6 4.2883 1.3999 -2.4130 15 6 3.0610 1.4870 -3.3223 16 6 3.3865 2.3595 -4.5363 17 8 2.2400 2.4414 -5.3853 18 6 2.4389 3.2373 -6.5553 19 6 2.8875 2.3513 -7.7439 20 6 2.4680 3.1989 -8.9749 21 6 1.1226 3.8297 -8.5604 22 6 1.1041 3.8542 -7.0220 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8899 28 1 3.8507 0.5685 0.8426 29 1 3.9785 2.1765 0.0902 30 1 5.6648 -1.4177 1.4145 31 1 5.1188 0.9597 -2.9649 32 1 4.5640 2.3997 -2.0779 33 1 2.2304 1.9271 -2.7705 34 1 2.7852 0.4871 -3.6574 35 1 4.2170 1.9190 -5.0880 36 1 3.6626 3.3594 -4.2015 37 1 3.1740 4.0190 -6.3634 38 1 3.9666 2.1989 -7.7263 39 1 2.3613 1.3968 -7.7344 40 1 2.3371 2.5618 -9.8496 41 1 3.2070 3.9744 -9.1761 42 1 0.2960 3.2256 -8.9342 43 1 1.0493 4.8447 -8.9509 44 1 0.2685 3.2619 -6.6491 45 1 1.0222 4.8808 -6.6650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699952497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = -89.573391 kcal Electronic energy + Delta-G solvation = -21625.517239 eV Core-core repulsion = 18450.306409 eV Total energy + Delta-G solvation = -3175.210830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.89681 -37.24333 -36.25322 -35.25795 -32.21711 -30.59359 -28.85301 -28.54144 -27.47430 -25.58843 -24.92651 -23.02709 -21.00610 -20.81044 -20.37023 -19.92303 -17.00674 -16.57134 -15.82615 -15.66256 -15.28639 -14.93534 -14.81185 -14.41950 -13.95216 -13.68678 -13.44179 -13.24405 -12.96756 -12.78731 -12.09737 -11.97379 -11.74030 -11.47016 -11.30832 -11.22404 -11.01214 -10.92600 -10.74699 -10.70011 -10.64432 -10.50065 -10.45224 -10.30838 -9.87171 -9.73850 -9.59209 -9.25271 -8.70989 -8.30858 -6.44213 -5.64283 -3.21247 3.48737 3.56440 3.60920 3.83112 4.46303 4.50867 4.63313 4.75780 4.78701 5.13827 5.30542 5.34999 5.38628 5.45119 5.52374 5.52853 5.59096 5.67266 5.72546 5.77062 5.81745 5.87065 5.87764 5.98499 6.06513 6.08440 6.12421 6.16474 6.18192 6.23161 6.35558 6.41503 6.57180 6.71492 6.76468 6.96688 7.16754 7.53104 7.70609 7.97906 8.14804 8.68333 9.32431 9.95790 10.51866 11.37522 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.003961 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.891800 B = 7067.039766 C = 7527.206540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.045 3.955 4 C 0.144 3.856 5 N -0.575 5.575 6 C -0.239 4.239 7 H 0.056 0.944 8 C 0.018 3.982 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.151 3.849 15 C -0.134 4.134 16 C 0.065 3.935 17 O -0.381 6.381 18 C 0.082 3.918 19 C -0.148 4.148 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.123 4.123 23 H 0.074 0.926 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.101 0.899 29 H 0.039 0.961 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 10.269 -12.620 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.017 3.983 5 N -0.295 5.295 6 C -0.369 4.369 7 H 0.073 0.927 8 C -0.181 4.181 9 N -0.537 5.537 10 Si 0.728 3.272 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.024 3.976 15 C -0.175 4.175 16 C -0.012 4.012 17 O -0.300 6.300 18 C 0.024 3.976 19 C -0.185 4.185 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.161 4.161 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.830 9.936 -12.420 17.310 hybrid contribution -0.371 -0.522 0.098 0.647 sum -7.200 9.414 -12.321 17.097 Atomic orbital electron populations 1.22628 0.84333 1.01426 0.98383 1.88211 1.16482 1.27715 1.94810 1.23507 0.98980 0.84126 0.96844 1.21018 0.87455 0.96514 0.93273 1.43602 1.75571 1.02896 1.07408 1.18855 1.35512 0.81591 1.00907 0.92668 1.25056 0.96297 0.97653 0.99090 1.70001 1.34140 1.35717 1.13881 0.86323 0.77340 0.85752 0.77816 1.20209 1.22180 1.21551 1.20743 0.93334 0.94046 0.89461 1.22305 1.01653 0.99337 0.94171 1.22643 0.87762 0.99024 0.91746 1.87952 1.37416 1.70739 1.33864 1.22945 0.96735 0.92377 0.85558 1.23057 1.01183 0.99627 0.94674 1.22327 0.96983 0.99033 0.97784 1.22076 0.97884 1.00765 0.95238 1.22183 0.97947 1.00758 0.95223 0.90782 0.95611 0.95264 0.95971 0.95160 0.88186 0.94239 0.93887 0.93560 0.94764 0.92362 0.91497 0.93757 0.94082 0.91951 0.91473 0.90428 0.91546 0.91661 0.91647 0.91818 0.90542 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.11 10.18 -35.23 -0.36 -8.47 16 3 C 0.04 0.94 6.28 37.16 0.23 1.17 16 4 C 0.14 3.42 5.76 -4.04 -0.02 3.40 16 5 N -0.58 -14.43 2.41 -173.24 -0.42 -14.84 16 6 C -0.24 -6.67 8.95 -15.06 -0.13 -6.81 16 7 H 0.06 1.58 7.91 -52.49 -0.42 1.16 16 8 C 0.02 0.52 4.95 -17.43 -0.09 0.43 16 9 N -0.89 -26.25 11.53 55.49 0.64 -25.61 16 10 Si 0.90 22.72 29.60 -169.99 -5.03 17.69 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 C 0.15 3.18 5.72 -4.04 -0.02 3.15 16 15 C -0.13 -2.54 5.88 -26.73 -0.16 -2.70 16 16 C 0.07 1.02 5.79 37.16 0.22 1.24 16 17 O -0.38 -6.00 10.05 -35.23 -0.35 -6.36 16 18 C 0.08 1.01 3.33 -25.07 -0.08 0.92 16 19 C -0.15 -1.63 6.65 -24.55 -0.16 -1.79 16 20 C -0.12 -1.08 6.84 -24.89 -0.17 -1.25 16 21 C -0.12 -1.05 6.80 -25.62 -0.17 -1.23 16 22 C -0.12 -1.30 6.56 -25.61 -0.17 -1.47 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.61 6.48 -51.93 -0.34 0.27 16 28 H 0.10 2.73 5.58 -51.93 -0.29 2.44 16 29 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.06 1.14 6.48 -51.93 -0.34 0.80 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 37 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -30.72 357.99 -8.24 -38.96 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.49 Total: -3.45 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 0.38 Total: -3.29 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.22 Total: -40.46 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.71 Total: -14.83 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.72 -8.24 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699952497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.617 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds