Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00015 * 2 1 4 4 C 1.52999 * 109.47068 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47294 * 65.00040 * 4 3 2 6 6 C 1.36935 * 120.00342 * 270.00043 * 5 4 3 7 7 H 1.07997 * 120.00275 * 141.45088 * 6 5 4 8 8 C 1.38817 * 119.99678 * 321.45794 * 6 5 4 9 9 N 1.31620 * 119.99711 * 338.82771 * 8 6 5 10 10 Si 1.86797 * 119.99874 * 158.82749 * 8 6 5 11 11 H 1.48500 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47334 * 120.00003 * 10 8 6 13 13 H 1.48507 * 109.47093 * 239.99983 * 10 8 6 14 14 C 1.46500 * 119.99664 * 89.99564 * 5 4 3 15 15 C 1.52996 * 109.47413 * 264.70784 * 14 5 4 16 16 C 1.53003 * 109.47607 * 180.02562 * 15 14 5 17 17 O 1.42898 * 109.47516 * 180.02562 * 16 15 14 18 18 C 1.42892 * 113.99920 * 180.02562 * 17 16 15 19 19 C 1.54893 * 110.48994 * 93.24157 * 18 17 16 20 20 C 1.55230 * 102.58956 * 156.67296 * 19 18 17 21 21 C 1.54263 * 104.23493 * 322.08783 * 20 19 18 22 22 C 1.53870 * 106.60077 * 23.61017 * 21 20 19 23 23 H 1.08998 * 109.47143 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47178 * 300.00030 * 1 2 3 25 25 H 1.08998 * 109.46913 * 60.00203 * 1 2 3 26 26 H 1.08996 * 109.46971 * 59.99844 * 3 2 1 27 27 H 1.08996 * 109.47052 * 300.00042 * 3 2 1 28 28 H 1.08994 * 109.47094 * 305.00240 * 4 3 2 29 29 H 1.09000 * 109.47044 * 184.99708 * 4 3 2 30 30 H 0.97003 * 119.99266 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46899 * 144.71441 * 14 5 4 32 32 H 1.08997 * 109.47573 * 24.71302 * 14 5 4 33 33 H 1.09001 * 109.47287 * 60.00330 * 15 14 5 34 34 H 1.09005 * 109.47755 * 300.00591 * 15 14 5 35 35 H 1.09001 * 109.46760 * 59.99723 * 16 15 14 36 36 H 1.09005 * 109.46813 * 300.00883 * 16 15 14 37 37 H 1.09007 * 110.43861 * 330.70249 * 18 17 16 38 38 H 1.08996 * 110.75622 * 275.07239 * 19 18 17 39 39 H 1.09002 * 110.74884 * 38.43677 * 19 18 17 40 40 H 1.08998 * 110.47030 * 203.39621 * 20 19 18 41 41 H 1.09002 * 110.58290 * 80.83219 * 20 19 18 42 42 H 1.08998 * 110.03485 * 264.32321 * 21 20 19 43 43 H 1.09003 * 110.07291 * 142.91952 * 21 20 19 44 44 H 1.08997 * 110.03819 * 240.71721 * 22 21 20 45 45 H 1.09000 * 110.07858 * 119.30325 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0979 -0.7975 -1.3345 7 1 3.8085 -1.3108 -2.2396 8 6 4.5926 -1.5178 -0.2559 9 7 5.3194 -0.9144 0.6606 10 14 4.2266 -3.3433 -0.1052 11 1 3.3947 -3.7781 -1.2559 12 1 5.5014 -4.1050 -0.0997 13 1 3.4922 -3.5982 1.1602 14 6 4.2883 1.3999 -2.4130 15 6 3.0610 1.4870 -3.3223 16 6 3.3865 2.3595 -4.5363 17 8 2.2400 2.4414 -5.3853 18 6 2.4389 3.2373 -6.5553 19 6 2.8875 2.3513 -7.7439 20 6 2.4680 3.1989 -8.9749 21 6 1.1226 3.8297 -8.5604 22 6 1.1041 3.8542 -7.0220 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8899 28 1 3.8507 0.5685 0.8426 29 1 3.9785 2.1765 0.0902 30 1 5.6648 -1.4177 1.4145 31 1 5.1188 0.9597 -2.9649 32 1 4.5640 2.3997 -2.0779 33 1 2.2304 1.9271 -2.7705 34 1 2.7852 0.4871 -3.6574 35 1 4.2170 1.9190 -5.0880 36 1 3.6626 3.3594 -4.2015 37 1 3.1740 4.0190 -6.3634 38 1 3.9666 2.1989 -7.7263 39 1 2.3613 1.3968 -7.7344 40 1 2.3371 2.5618 -9.8496 41 1 3.2070 3.9744 -9.1761 42 1 0.2960 3.2256 -8.9342 43 1 1.0493 4.8447 -8.9509 44 1 0.2685 3.2619 -6.6491 45 1 1.0222 4.8808 -6.6650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699952497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = -107.269985 kcal Electronic energy + Delta-G solvation = -21626.284621 eV Core-core repulsion = 18450.306409 eV Total energy + Delta-G solvation = -3175.978212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.89929 -38.92010 -37.54671 -36.77214 -34.03500 -32.37928 -30.20698 -29.62463 -28.50878 -27.16622 -26.60948 -24.71755 -22.54009 -22.00716 -21.57257 -21.05795 -18.71230 -17.93547 -17.31643 -16.83278 -16.65508 -16.56805 -16.33786 -15.73838 -15.54714 -15.36339 -14.77747 -14.47464 -14.19923 -14.13162 -13.52675 -13.43361 -13.27601 -12.87556 -12.77286 -12.47945 -12.39619 -12.30346 -12.26614 -12.08151 -12.01631 -11.93934 -11.78673 -11.53941 -11.47634 -11.37924 -11.30235 -10.44386 -10.37844 -10.28304 -8.48520 -7.75058 -5.35983 1.45047 1.49355 1.58611 2.54512 2.75306 3.20457 3.36665 3.66138 3.71793 3.75290 4.02633 4.09615 4.26653 4.37513 4.40854 4.49652 4.51429 4.56712 4.58377 4.62514 4.63989 4.67089 4.74749 4.78718 4.79832 4.82885 4.90238 4.94397 4.98669 5.00657 5.06809 5.18713 5.23068 5.27903 5.35359 5.45602 5.54465 5.72560 5.80141 6.41204 6.49642 6.66919 7.26305 7.94130 8.44791 9.21790 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.003961 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.891800 B = 7067.039766 C = 7527.206540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.053 3.947 4 C 0.142 3.858 5 N -0.592 5.592 6 C -0.239 4.239 7 H 0.041 0.959 8 C -0.026 4.026 9 N -0.920 5.920 10 Si 0.948 3.052 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.151 3.849 15 C -0.117 4.117 16 C 0.074 3.926 17 O -0.404 6.404 18 C 0.072 3.928 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.124 4.124 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.249 0.751 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 11.715 -13.876 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.015 3.985 5 N -0.312 5.312 6 C -0.370 4.370 7 H 0.058 0.942 8 C -0.222 4.222 9 N -0.565 5.565 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.219 1.219 14 C 0.025 3.975 15 C -0.157 4.157 16 C -0.003 4.003 17 O -0.323 6.323 18 C 0.014 3.986 19 C -0.188 4.188 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.161 4.161 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.666 11.400 -13.701 19.402 hybrid contribution -0.163 -0.921 0.449 1.038 sum -7.829 10.479 -13.251 18.620 Atomic orbital electron populations 1.22812 0.81683 1.02609 0.99951 1.88131 1.19525 1.28844 1.95171 1.23315 0.96904 0.83951 0.98364 1.20971 0.89643 0.96340 0.91501 1.43792 1.76147 1.02472 1.08828 1.18896 1.34469 0.83301 1.00335 0.94156 1.25595 0.96723 1.00713 0.99201 1.70098 1.35326 1.36717 1.14322 0.85526 0.77098 0.82271 0.77355 1.20010 1.21731 1.21934 1.20816 0.93894 0.94295 0.88483 1.21985 1.00203 0.98394 0.95149 1.22445 0.87876 0.99262 0.90682 1.87910 1.37490 1.71803 1.35144 1.23251 0.98188 0.92569 0.84575 1.23059 1.01083 0.99135 0.95562 1.22329 0.97286 0.99091 0.96878 1.22084 0.97901 1.01968 0.93675 1.22217 0.96352 1.00893 0.96670 0.89942 0.93323 0.94241 0.93484 0.94276 0.91789 0.92574 0.94216 0.94527 0.92604 0.92917 0.94452 0.93246 0.92071 0.90724 0.91331 0.92132 0.90620 0.90329 0.91430 0.89949 0.92109 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.98 10.18 -148.98 -1.52 -19.50 16 3 C 0.05 2.18 6.28 71.98 0.45 2.63 16 4 C 0.14 6.71 5.76 86.38 0.50 7.21 16 5 N -0.59 -29.85 2.41 -702.02 -1.69 -31.53 16 6 C -0.24 -13.59 8.95 84.03 0.75 -12.84 16 7 H 0.04 2.37 7.91 -2.91 -0.02 2.35 16 8 C -0.03 -1.48 4.95 84.86 0.42 -1.06 16 9 N -0.92 -54.93 11.53 21.65 0.25 -54.68 16 10 Si 0.95 47.37 29.60 68.60 2.03 49.40 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 13 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 14 C 0.15 6.28 5.72 86.38 0.49 6.78 16 15 C -0.12 -4.39 5.88 30.59 0.18 -4.21 16 16 C 0.07 2.23 5.79 71.98 0.42 2.65 16 17 O -0.40 -12.37 10.05 -148.98 -1.50 -13.87 16 18 C 0.07 1.64 3.33 31.67 0.11 1.75 16 19 C -0.15 -3.13 6.65 32.01 0.21 -2.92 16 20 C -0.12 -1.78 6.84 31.79 0.22 -1.56 16 21 C -0.12 -1.75 6.80 31.32 0.21 -1.54 16 22 C -0.12 -2.39 6.56 31.32 0.21 -2.18 16 23 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.52 6.48 -2.39 -0.02 1.50 16 28 H 0.06 3.55 5.58 -2.39 -0.01 3.54 16 29 H 0.06 2.39 7.86 -2.39 -0.02 2.37 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.06 2.07 7.83 -2.39 -0.02 2.05 16 33 H 0.05 2.01 6.48 -2.39 -0.02 2.00 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.60 8.11 -2.38 -0.02 1.58 16 37 H 0.07 1.52 7.84 -2.38 -0.02 1.50 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.36 8.07 -2.39 -0.02 1.34 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -66.47 357.99 3.91 -62.56 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.92 Total: 10.79 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.41 Total: -3.18 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.44 Total: -86.21 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -3.01 Total: -33.36 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -66.47 3.91 -62.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699952497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.707 kcal (2) G-P(sol) polarization free energy of solvation -66.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds