Wall clock time and date at job start Mon Mar 30 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47380 * 2 1 4 4 C 1.53000 * 109.47078 * 240.00511 * 2 1 3 5 5 O 1.42901 * 109.47431 * 65.00267 * 4 2 1 6 6 C 1.42894 * 114.00131 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47404 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.47211 * 64.99697 * 7 6 5 9 9 C 1.42894 * 114.00137 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47263 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72549 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.52998 * 109.47286 * 120.00406 * 2 1 3 19 19 H 1.09002 * 109.46181 * 60.00015 * 18 2 1 20 20 C 1.53035 * 109.46122 * 300.02198 * 18 2 1 21 21 C 1.53118 * 109.28123 * 180.80529 * 20 18 2 22 22 C 1.53118 * 109.15984 * 57.64944 * 21 20 18 23 23 C 1.53039 * 109.27953 * 302.35079 * 22 21 20 24 24 N 1.46840 * 109.51672 * 59.18421 * 23 22 21 25 25 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46953 * 299.99930 * 1 2 3 27 27 H 1.09010 * 109.46849 * 59.99674 * 1 2 3 28 28 H 1.08998 * 109.47209 * 304.99975 * 4 2 1 29 29 H 1.09006 * 109.47225 * 184.99850 * 4 2 1 30 30 H 1.08997 * 109.47579 * 59.99343 * 6 5 4 31 31 H 1.09002 * 109.47601 * 299.99489 * 6 5 4 32 32 H 1.09001 * 109.47536 * 305.00200 * 7 6 5 33 33 H 1.08994 * 109.47566 * 184.99802 * 7 6 5 34 34 H 1.09001 * 109.47678 * 60.00187 * 9 8 7 35 35 H 1.08998 * 109.47532 * 300.00132 * 9 8 7 36 36 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.50444 * 300.74679 * 20 18 2 38 38 H 1.08999 * 109.50237 * 60.81962 * 20 18 2 39 39 H 1.08992 * 109.52523 * 177.56185 * 21 20 18 40 40 H 1.09001 * 109.51722 * 297.68503 * 21 20 18 41 41 H 1.09004 * 109.50351 * 62.29272 * 22 21 20 42 42 H 1.09004 * 109.50219 * 182.36806 * 22 21 20 43 43 H 1.09004 * 109.46188 * 179.19783 * 23 22 21 44 44 H 1.09005 * 109.46246 * 299.16812 * 23 22 21 45 45 H 1.00900 * 110.99425 * 174.14829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.6620 0.0170 -2.4131 6 6 2.0914 -0.5742 -3.6411 7 6 1.6335 0.2958 -4.8135 8 8 2.2926 1.5623 -4.7528 9 6 1.9329 2.4558 -5.8083 10 6 2.6825 3.7531 -5.6457 11 1 3.3656 3.8820 -4.8191 12 6 2.5011 4.7730 -6.5555 13 7 1.6741 4.6136 -7.5656 14 14 3.4307 6.3807 -6.3542 15 1 4.8914 6.1166 -6.3980 16 1 3.0624 7.3066 -7.4552 17 1 3.0778 6.9965 -5.0498 18 6 2.0400 -0.7213 1.2492 19 1 1.6766 -1.7490 1.2489 20 6 1.5293 -0.0001 2.4986 21 6 2.0586 -0.7134 3.7459 22 6 3.5887 -0.7429 3.6967 23 6 4.0396 -1.4425 2.4125 24 7 3.5085 -0.7217 1.2487 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7197 -1.2953 29 1 3.1264 -0.7994 -1.2057 30 1 1.6576 -1.5695 -3.7366 31 1 3.1788 -0.6497 -3.6474 32 1 0.5552 0.4443 -4.7564 33 1 1.8828 -0.1989 -5.7522 34 1 0.8608 2.6492 -5.7714 35 1 2.1881 2.0062 -6.7679 36 1 1.5466 5.3310 -8.2060 37 1 1.8811 1.0316 2.4926 38 1 0.4395 -0.0129 2.5062 39 1 1.7329 -0.1778 4.6375 40 1 1.6744 -1.7331 3.7728 41 1 3.9729 0.2771 3.7096 42 1 3.9701 -1.2864 4.5612 43 1 5.1287 -1.4525 2.3676 44 1 3.6666 -2.4667 2.4067 45 1 3.8697 -1.1071 0.3890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700253319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:11 Heat of formation + Delta-G solvation = -117.083336 kcal Electronic energy + Delta-G solvation = -21100.956276 eV Core-core repulsion = 17924.552525 eV Total energy + Delta-G solvation = -3176.403751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50364 -37.83287 -36.35262 -34.41354 -32.66615 -32.33447 -30.05836 -29.07886 -26.87923 -26.19434 -23.96760 -23.09098 -22.36258 -21.86202 -20.26466 -19.86804 -17.22298 -16.37847 -16.24593 -16.06489 -15.40153 -14.86681 -14.75594 -14.51364 -14.26130 -14.12759 -13.86152 -13.47170 -13.35381 -13.25104 -12.83626 -12.50839 -12.23763 -11.75447 -11.60158 -11.34646 -11.29813 -11.12382 -11.00889 -10.81209 -10.77737 -10.72289 -10.55121 -10.38484 -10.24468 -9.94878 -9.35821 -9.05269 -8.77307 -8.63266 -8.11527 -6.05711 -4.06938 3.36904 3.38751 3.43480 3.80284 3.91107 4.39585 4.51745 4.64112 4.70855 4.82478 4.89938 4.99299 5.06302 5.14195 5.20393 5.30631 5.31308 5.34529 5.46205 5.48627 5.51327 5.62811 5.64159 5.68740 5.73332 5.77198 5.85993 5.90016 6.02620 6.05452 6.07820 6.13857 6.26349 6.31929 6.33725 6.87782 7.14634 7.16194 7.46667 7.49634 7.85297 8.21009 8.64071 9.06631 9.57631 11.05964 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.003121 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.218034 B = 8969.339781 C = 9537.437297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.091 0.909 4 C 0.065 3.935 5 O -0.368 6.368 6 C 0.069 3.931 7 C 0.064 3.936 8 O -0.388 6.388 9 C 0.194 3.806 10 C -0.513 4.513 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.909 3.091 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.098 3.902 19 H 0.036 0.964 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.119 4.119 23 C 0.058 3.942 24 N -0.688 5.688 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -15.379 19.937 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.110 0.890 4 C -0.012 4.012 5 O -0.287 6.287 6 C -0.008 4.008 7 C -0.014 4.014 8 O -0.308 6.308 9 C 0.120 3.880 10 C -0.551 4.551 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.736 3.264 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.012 4.012 19 H 0.054 0.946 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.071 4.071 24 N -0.321 5.321 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.042 -14.449 20.221 24.852 hybrid contribution 0.216 -0.489 -0.601 0.804 sum 0.258 -14.938 19.620 24.661 Atomic orbital electron populations 1.21812 0.94292 1.01453 1.02614 1.21154 0.96411 1.01464 0.91387 0.89036 1.22484 0.98177 0.94185 0.86368 1.88032 1.78092 1.49607 1.12971 1.22550 0.98987 0.94879 0.84380 1.22246 0.96893 0.87460 0.94779 1.87921 1.66830 1.23438 1.52588 1.20198 0.95374 0.87837 0.84570 1.21038 1.25330 0.97490 1.11265 0.91548 1.24948 0.95640 0.99065 0.94891 1.69958 1.36364 1.33596 1.14082 0.86386 0.80065 0.82248 0.77726 1.20026 1.21200 1.19950 1.21448 0.87412 0.97393 0.94930 0.94600 1.21677 1.00150 1.00362 0.92966 1.21582 0.95784 1.00408 0.98135 1.21597 0.95854 1.01698 0.96495 1.21898 0.99538 0.94569 0.91077 1.60329 1.07413 1.59030 1.05343 0.93306 0.92468 0.91189 0.94340 0.93522 0.93085 0.92850 0.93733 0.93104 0.97689 0.97821 0.92655 0.90820 0.91164 0.91835 0.92517 0.91010 0.91886 0.90830 0.95543 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.74 37.16 0.32 -1.28 16 2 C -0.09 -1.01 2.40 -90.62 -0.22 -1.23 16 3 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 4 C 0.07 0.83 5.12 37.16 0.19 1.02 16 5 O -0.37 -6.30 9.84 -40.08 -0.39 -6.69 16 6 C 0.07 1.09 6.32 37.16 0.23 1.33 16 7 C 0.06 1.25 6.32 37.16 0.23 1.48 16 8 O -0.39 -9.93 10.29 -40.08 -0.41 -10.34 16 9 C 0.19 5.55 5.69 36.01 0.20 5.75 16 10 C -0.51 -15.65 9.43 -34.44 -0.32 -15.98 16 11 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 14 Si 0.91 22.39 29.54 -169.99 -5.02 17.36 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.10 0.97 2.08 -67.72 -0.14 0.83 16 19 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 20 C -0.11 -1.04 4.99 -26.65 -0.13 -1.17 16 21 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 22 C -0.12 -0.93 6.09 -26.65 -0.16 -1.10 16 23 C 0.06 0.49 6.55 -3.84 -0.03 0.46 16 24 N -0.69 -6.92 6.49 -106.76 -0.69 -7.61 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.56 6.45 -51.93 -0.33 0.22 16 27 H 0.07 0.92 7.82 -51.92 -0.41 0.52 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.56 6.29 -51.93 -0.33 0.24 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 6.47 -51.93 -0.34 0.25 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.34 3.31 6.68 -39.29 -0.26 3.05 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -32.79 354.22 -8.92 -41.70 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.40 Total: -3.52 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.07 Total: -9.44 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.04 Total: -34.42 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.81 Total: -17.03 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -8.92 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700253319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.379 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds