Wall clock time and date at job start Mon Mar 30 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47380 * 2 1 4 4 C 1.53000 * 109.47078 * 240.00511 * 2 1 3 5 5 O 1.42901 * 109.47431 * 65.00267 * 4 2 1 6 6 C 1.42894 * 114.00131 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47404 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.47211 * 64.99697 * 7 6 5 9 9 C 1.42894 * 114.00137 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47263 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72549 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.52998 * 109.47286 * 120.00406 * 2 1 3 19 19 H 1.09002 * 109.46181 * 60.00015 * 18 2 1 20 20 C 1.53035 * 109.46122 * 300.02198 * 18 2 1 21 21 C 1.53118 * 109.28123 * 180.80529 * 20 18 2 22 22 C 1.53118 * 109.15984 * 57.64944 * 21 20 18 23 23 C 1.53039 * 109.27953 * 302.35079 * 22 21 20 24 24 N 1.46840 * 109.51672 * 59.18421 * 23 22 21 25 25 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46953 * 299.99930 * 1 2 3 27 27 H 1.09010 * 109.46849 * 59.99674 * 1 2 3 28 28 H 1.08998 * 109.47209 * 304.99975 * 4 2 1 29 29 H 1.09006 * 109.47225 * 184.99850 * 4 2 1 30 30 H 1.08997 * 109.47579 * 59.99343 * 6 5 4 31 31 H 1.09002 * 109.47601 * 299.99489 * 6 5 4 32 32 H 1.09001 * 109.47536 * 305.00200 * 7 6 5 33 33 H 1.08994 * 109.47566 * 184.99802 * 7 6 5 34 34 H 1.09001 * 109.47678 * 60.00187 * 9 8 7 35 35 H 1.08998 * 109.47532 * 300.00132 * 9 8 7 36 36 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.50444 * 300.74679 * 20 18 2 38 38 H 1.08999 * 109.50237 * 60.81962 * 20 18 2 39 39 H 1.08992 * 109.52523 * 177.56185 * 21 20 18 40 40 H 1.09001 * 109.51722 * 297.68503 * 21 20 18 41 41 H 1.09004 * 109.50351 * 62.29272 * 22 21 20 42 42 H 1.09004 * 109.50219 * 182.36806 * 22 21 20 43 43 H 1.09004 * 109.46188 * 179.19783 * 23 22 21 44 44 H 1.09005 * 109.46246 * 299.16812 * 23 22 21 45 45 H 1.00900 * 110.99425 * 174.14829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.6620 0.0170 -2.4131 6 6 2.0914 -0.5742 -3.6411 7 6 1.6335 0.2958 -4.8135 8 8 2.2926 1.5623 -4.7528 9 6 1.9329 2.4558 -5.8083 10 6 2.6825 3.7531 -5.6457 11 1 3.3656 3.8820 -4.8191 12 6 2.5011 4.7730 -6.5555 13 7 1.6741 4.6136 -7.5656 14 14 3.4307 6.3807 -6.3542 15 1 4.8914 6.1166 -6.3980 16 1 3.0624 7.3066 -7.4552 17 1 3.0778 6.9965 -5.0498 18 6 2.0400 -0.7213 1.2492 19 1 1.6766 -1.7490 1.2489 20 6 1.5293 -0.0001 2.4986 21 6 2.0586 -0.7134 3.7459 22 6 3.5887 -0.7429 3.6967 23 6 4.0396 -1.4425 2.4125 24 7 3.5085 -0.7217 1.2487 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7197 -1.2953 29 1 3.1264 -0.7994 -1.2057 30 1 1.6576 -1.5695 -3.7366 31 1 3.1788 -0.6497 -3.6474 32 1 0.5552 0.4443 -4.7564 33 1 1.8828 -0.1989 -5.7522 34 1 0.8608 2.6492 -5.7714 35 1 2.1881 2.0062 -6.7679 36 1 1.5466 5.3310 -8.2060 37 1 1.8811 1.0316 2.4926 38 1 0.4395 -0.0129 2.5062 39 1 1.7329 -0.1778 4.6375 40 1 1.6744 -1.7331 3.7728 41 1 3.9729 0.2771 3.7096 42 1 3.9701 -1.2864 4.5612 43 1 5.1287 -1.4525 2.3676 44 1 3.6666 -2.4667 2.4067 45 1 3.8697 -1.1071 0.3890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700253319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:11 Heat of formation + Delta-G solvation = -139.387933 kcal Electronic energy + Delta-G solvation = -21101.923476 eV Core-core repulsion = 17924.552525 eV Total energy + Delta-G solvation = -3177.370951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33432 -39.14597 -38.05515 -35.39256 -34.87576 -33.03781 -31.38628 -30.14285 -28.90531 -27.26307 -24.71371 -24.55402 -23.85222 -23.36519 -21.09609 -20.62765 -18.66870 -18.19580 -17.68421 -17.24228 -16.77010 -16.32398 -16.05793 -15.91246 -15.64812 -15.13558 -14.95435 -14.51731 -14.31485 -14.09888 -14.01100 -13.68372 -13.51537 -13.34799 -13.04670 -12.86716 -12.65832 -12.45570 -12.25599 -12.16259 -11.95514 -11.82958 -11.66577 -11.63789 -11.31813 -11.20397 -11.03734 -10.88622 -10.50370 -10.25260 -9.36182 -8.33066 -6.45774 1.39154 1.44623 1.53000 2.34623 2.69606 3.00333 3.17466 3.18819 3.76319 3.86673 3.96267 4.04586 4.13486 4.20806 4.26147 4.31099 4.35984 4.38948 4.49737 4.55808 4.59175 4.64479 4.72785 4.76080 4.81919 4.83565 4.86946 4.89278 5.00992 5.04842 5.11216 5.15859 5.20892 5.30136 5.35382 5.39923 5.50406 5.53462 5.94761 6.15997 6.32495 6.43931 6.53093 6.80966 7.26158 8.79242 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.003121 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.218034 B = 8969.339781 C = 9537.437297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.059 0.941 4 C 0.062 3.938 5 O -0.403 6.403 6 C 0.074 3.926 7 C 0.051 3.949 8 O -0.408 6.408 9 C 0.209 3.791 10 C -0.552 4.552 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.267 1.267 18 C 0.106 3.894 19 H 0.047 0.953 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.119 4.119 23 C 0.057 3.943 24 N -0.704 5.704 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.069 0.931 34 H -0.017 1.017 35 H -0.010 1.010 36 H 0.272 0.728 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -16.188 21.164 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.014 4.014 5 O -0.323 6.323 6 C -0.002 4.002 7 C -0.026 4.026 8 O -0.328 6.328 9 C 0.134 3.866 10 C -0.590 4.590 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.192 1.192 18 C -0.004 4.004 19 H 0.065 0.935 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.072 4.072 24 N -0.338 5.338 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.001 0.999 35 H 0.008 0.992 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.553 -15.287 21.460 26.354 hybrid contribution 0.015 -0.319 -0.972 1.023 sum 0.568 -15.606 20.488 25.761 Atomic orbital electron populations 1.21765 0.93783 1.02312 1.01865 1.21125 0.96863 0.99919 0.92282 0.92230 1.22681 0.98789 0.94900 0.85044 1.87988 1.78618 1.51404 1.14302 1.22550 0.99364 0.95455 0.82832 1.22659 0.96597 0.85567 0.97786 1.87870 1.67741 1.25609 1.51559 1.19830 0.93740 0.88240 0.84822 1.21370 1.26444 0.99151 1.12002 0.92265 1.25980 0.96238 1.02968 0.94000 1.70060 1.37124 1.35152 1.14619 0.85220 0.78839 0.76992 0.78279 1.18865 1.19669 1.19157 1.21360 0.87470 0.97572 0.93996 0.93480 1.21689 1.00684 0.99456 0.93439 1.21577 0.95656 1.00799 0.97615 1.21613 0.95972 1.01103 0.96981 1.21968 0.99877 0.94830 0.90504 1.60339 1.07540 1.59854 1.06046 0.91571 0.91301 0.93849 0.91940 0.92983 0.88839 0.92571 0.94009 0.91284 0.99904 0.99193 0.91937 0.92610 0.90331 0.91023 0.91582 0.92412 0.90185 0.90322 0.94622 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.74 71.98 0.63 -2.40 16 2 C -0.08 -1.95 2.40 -10.79 -0.03 -1.97 16 3 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 4 C 0.06 1.53 5.12 71.98 0.37 1.89 16 5 O -0.40 -13.72 9.84 -144.34 -1.42 -15.14 16 6 C 0.07 2.28 6.32 71.98 0.45 2.73 16 7 C 0.05 1.99 6.32 71.98 0.45 2.44 16 8 O -0.41 -21.46 10.29 -144.34 -1.49 -22.94 16 9 C 0.21 12.35 5.69 71.24 0.41 12.75 16 10 C -0.55 -34.48 9.43 25.60 0.24 -34.24 16 11 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 12 C 0.01 0.39 5.46 84.65 0.46 0.86 16 13 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 14 Si 0.98 45.73 29.54 68.60 2.03 47.75 16 15 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 C 0.11 1.96 2.08 44.94 0.09 2.05 16 19 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 20 C -0.11 -1.97 4.99 30.65 0.15 -1.82 16 21 C -0.12 -1.63 6.00 30.67 0.18 -1.45 16 22 C -0.12 -1.68 6.09 30.65 0.19 -1.49 16 23 C 0.06 0.86 6.55 86.33 0.57 1.42 16 24 N -0.70 -13.47 6.49 -491.69 -3.19 -16.66 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.30 6.45 -2.39 -0.02 1.28 16 27 H 0.04 1.17 7.82 -2.38 -0.02 1.15 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.21 6.29 -2.38 -0.01 1.19 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.19 6.47 -2.39 -0.02 1.17 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.34 6.29 6.68 -89.69 -0.60 5.69 16 Total: -1.00 -71.64 354.22 0.72 -70.92 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.33 Total: 12.35 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 4.17 Total: -19.21 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -2.91 Total: -73.73 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -2.91 Total: -38.08 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.64 0.72 -70.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700253319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.471 kcal (2) G-P(sol) polarization free energy of solvation -71.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds