Wall clock time and date at job start Mon Mar 30 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47047 * 2 1 4 4 C 1.53000 * 109.46733 * 119.99393 * 2 1 3 5 5 O 1.42901 * 109.47431 * 295.00345 * 4 2 1 6 6 C 1.42894 * 114.00131 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47404 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.47211 * 64.99697 * 7 6 5 9 9 C 1.42894 * 114.00137 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47263 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72549 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47426 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.46833 * 239.99986 * 14 12 10 18 18 C 1.52992 * 109.47172 * 239.99265 * 2 1 3 19 19 H 1.09002 * 109.46496 * 184.98110 * 18 2 1 20 20 C 1.53041 * 109.46423 * 65.00483 * 18 2 1 21 21 C 1.53114 * 109.28081 * 180.80354 * 20 18 2 22 22 C 1.53122 * 109.16158 * 57.65246 * 21 20 18 23 23 C 1.53039 * 109.27759 * 302.34857 * 22 21 20 24 24 N 1.46844 * 109.46524 * 304.94875 * 18 2 1 25 25 H 1.09000 * 109.47357 * 300.00489 * 1 2 3 26 26 H 1.09008 * 109.46985 * 60.00202 * 1 2 3 27 27 H 1.08999 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47209 * 175.00053 * 4 2 1 29 29 H 1.09006 * 109.47225 * 54.99928 * 4 2 1 30 30 H 1.08997 * 109.47579 * 59.99343 * 6 5 4 31 31 H 1.09002 * 109.47601 * 299.99489 * 6 5 4 32 32 H 1.09001 * 109.47536 * 305.00200 * 7 6 5 33 33 H 1.08994 * 109.47566 * 184.99802 * 7 6 5 34 34 H 1.09001 * 109.47678 * 60.00187 * 9 8 7 35 35 H 1.08998 * 109.47532 * 300.00132 * 9 8 7 36 36 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.49881 * 300.74752 * 20 18 2 38 38 H 1.08999 * 109.49879 * 60.81873 * 20 18 2 39 39 H 1.09000 * 109.52455 * 177.55788 * 21 20 18 40 40 H 1.09000 * 109.52361 * 297.68627 * 21 20 18 41 41 H 1.08999 * 109.50119 * 62.28756 * 22 21 20 42 42 H 1.09002 * 109.50124 * 182.36233 * 22 21 20 43 43 H 1.08995 * 109.45941 * 179.19456 * 23 22 21 44 44 H 1.09005 * 109.45963 * 299.17255 * 23 22 21 45 45 H 1.00900 * 111.00264 * 305.85999 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 1.6618 0.0169 2.4131 6 6 2.0921 -0.5736 3.6411 7 6 1.6350 0.2969 4.8134 8 8 0.2073 0.3008 4.8756 9 6 -0.3259 1.0893 5.9413 10 6 -1.8312 1.0222 5.9115 11 1 -2.3305 0.4356 5.1545 12 6 -2.5706 1.7046 6.8541 13 7 -1.9622 2.4137 7.7796 14 14 -4.4363 1.6208 6.8175 15 1 -4.8711 0.7626 5.6863 16 1 -4.9312 1.0459 8.0941 17 1 -4.9898 2.9876 6.6426 18 6 2.0400 -0.7214 -1.2491 19 1 3.1264 -0.7992 -1.2055 20 6 1.6351 0.0690 -2.4955 21 6 2.1301 -0.6668 -3.7437 22 6 1.5453 -2.0818 -3.7579 23 6 1.9527 -2.8099 -2.4749 24 7 1.4554 -2.0670 -1.3100 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7994 1.2058 29 1 1.6052 -1.7197 1.2954 30 1 3.1794 -0.6485 3.6470 31 1 1.6589 -1.5692 3.7370 32 1 1.9952 1.3158 4.6715 33 1 2.0380 -0.1047 5.7430 34 1 -0.0064 2.1247 5.8224 35 1 0.0365 0.7046 6.8946 36 1 -2.4823 2.8935 8.4431 37 1 0.5495 0.1590 -2.5325 38 1 2.0815 1.0627 -2.4570 39 1 1.8065 -0.1299 -4.6354 40 1 3.2186 -0.7217 -3.7265 41 1 0.4582 -2.0257 -3.8149 42 1 1.9274 -2.6248 -4.6223 43 1 1.5260 -3.8128 -2.4754 44 1 3.0395 -2.8776 -2.4253 45 1 1.6286 -2.5756 -0.4559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700253349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:18 Heat of formation + Delta-G solvation = -117.323398 kcal Electronic energy + Delta-G solvation = -21168.518036 eV Core-core repulsion = 17992.103874 eV Total energy + Delta-G solvation = -3176.414161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.53145 -37.83459 -36.34467 -34.33265 -32.67083 -32.19992 -30.04752 -28.96342 -26.84741 -26.15051 -24.27668 -23.08400 -22.36443 -21.85937 -20.50689 -19.31118 -17.05232 -16.37522 -16.17077 -16.11607 -15.46050 -14.94058 -14.76409 -14.62934 -14.29265 -14.12938 -13.93888 -13.46842 -13.39976 -12.87624 -12.75459 -12.48587 -12.02762 -11.76042 -11.59434 -11.47538 -11.26797 -11.03205 -10.96155 -10.80026 -10.73145 -10.66106 -10.53020 -10.35546 -10.25310 -9.94596 -9.35890 -9.03178 -8.78630 -8.61210 -8.12161 -6.06473 -4.07460 3.32902 3.39068 3.46468 3.80186 3.93887 4.39250 4.52020 4.63582 4.70204 4.84057 4.89621 4.98467 5.11644 5.15764 5.22242 5.30120 5.32844 5.36495 5.45095 5.51079 5.54175 5.62736 5.64282 5.71387 5.81056 5.87291 5.90888 5.95077 6.04946 6.07526 6.11031 6.25695 6.27876 6.41618 6.69471 6.85608 7.14386 7.16188 7.46498 7.49422 7.85213 8.20481 8.63481 9.06760 9.57235 11.05307 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.003077 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.091496 B = 9098.413805 C = 9721.976015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.080 0.920 4 C 0.064 3.936 5 O -0.368 6.368 6 C 0.069 3.931 7 C 0.064 3.936 8 O -0.388 6.388 9 C 0.194 3.806 10 C -0.511 4.511 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.097 3.903 19 H 0.035 0.965 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.118 4.118 23 C 0.058 3.942 24 N -0.682 5.682 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 -8.443 -20.684 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.013 4.013 5 O -0.287 6.287 6 C -0.008 4.008 7 C -0.014 4.014 8 O -0.307 6.307 9 C 0.119 3.881 10 C -0.549 4.549 11 H 0.086 0.914 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.013 4.013 19 H 0.053 0.947 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.071 4.071 24 N -0.315 5.315 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.880 -8.050 -20.982 24.968 hybrid contribution 0.447 -0.276 0.699 0.874 sum 11.327 -8.326 -20.283 24.679 Atomic orbital electron populations 1.21675 0.93225 1.02697 1.01632 1.21164 0.98322 0.99519 0.91232 0.90160 1.22503 0.97166 0.95200 0.86413 1.88032 1.78617 1.49128 1.12953 1.22548 0.96808 0.97136 0.84294 1.22246 0.85880 0.98489 0.94771 1.87919 1.16054 1.72175 1.54596 1.20210 0.94280 0.89467 0.84100 1.21108 0.90225 1.29822 1.13761 0.91449 1.24955 0.99465 0.95127 0.95069 1.69977 1.35752 1.31763 1.16481 0.86281 0.84335 0.77898 0.78007 1.19418 1.20899 1.20844 1.21445 0.95559 0.89325 0.94953 0.94688 1.21664 1.02535 0.97928 0.93028 1.21580 1.00024 0.96139 0.98152 1.21585 1.01775 0.95676 0.96518 1.21899 0.96945 0.97119 0.91148 1.60313 1.62345 1.03204 1.05682 0.91703 0.93198 0.91818 0.94500 0.93473 0.93108 0.92851 0.93738 0.93109 0.97688 0.97823 0.92769 0.90430 0.91609 0.91875 0.92550 0.91045 0.91940 0.90881 0.95584 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.63 37.16 0.32 -1.49 16 2 C -0.08 -0.99 2.45 -90.62 -0.22 -1.21 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.06 0.82 4.97 37.16 0.18 1.00 16 5 O -0.37 -6.29 9.84 -40.08 -0.39 -6.69 16 6 C 0.07 1.09 6.32 37.16 0.23 1.33 16 7 C 0.06 1.24 6.32 37.16 0.23 1.48 16 8 O -0.39 -9.87 10.29 -40.08 -0.41 -10.28 16 9 C 0.19 5.51 5.69 36.01 0.20 5.71 16 10 C -0.51 -15.52 9.43 -34.44 -0.32 -15.84 16 11 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 14 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.10 0.94 2.19 -67.73 -0.15 0.79 16 19 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 20 C -0.11 -1.02 5.15 -26.65 -0.14 -1.16 16 21 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 22 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 23 C 0.06 0.46 6.55 -3.83 -0.03 0.44 16 24 N -0.68 -6.41 5.52 -106.76 -0.59 -7.00 16 25 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 26 H 0.05 0.60 6.55 -51.92 -0.34 0.26 16 27 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.57 6.86 -51.93 -0.36 0.21 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.77 6.53 -51.93 -0.34 0.43 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.34 3.10 7.11 -39.29 -0.28 2.82 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -32.51 353.80 -8.87 -41.37 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -8.42 Total: -3.72 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -0.10 Total: -9.57 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.15 Total: -33.74 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.81 Total: -16.97 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.51 -8.87 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700253349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.951 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds