Wall clock time and date at job start Mon Mar 30 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47047 * 2 1 4 4 C 1.53000 * 109.46733 * 119.99393 * 2 1 3 5 5 O 1.42901 * 109.47431 * 295.00345 * 4 2 1 6 6 C 1.42894 * 114.00131 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47404 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.47211 * 64.99697 * 7 6 5 9 9 C 1.42894 * 114.00137 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47263 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72549 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47426 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.46833 * 239.99986 * 14 12 10 18 18 C 1.52992 * 109.47172 * 239.99265 * 2 1 3 19 19 H 1.09002 * 109.46496 * 184.98110 * 18 2 1 20 20 C 1.53041 * 109.46423 * 65.00483 * 18 2 1 21 21 C 1.53114 * 109.28081 * 180.80354 * 20 18 2 22 22 C 1.53122 * 109.16158 * 57.65246 * 21 20 18 23 23 C 1.53039 * 109.27759 * 302.34857 * 22 21 20 24 24 N 1.46844 * 109.46524 * 304.94875 * 18 2 1 25 25 H 1.09000 * 109.47357 * 300.00489 * 1 2 3 26 26 H 1.09008 * 109.46985 * 60.00202 * 1 2 3 27 27 H 1.08999 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47209 * 175.00053 * 4 2 1 29 29 H 1.09006 * 109.47225 * 54.99928 * 4 2 1 30 30 H 1.08997 * 109.47579 * 59.99343 * 6 5 4 31 31 H 1.09002 * 109.47601 * 299.99489 * 6 5 4 32 32 H 1.09001 * 109.47536 * 305.00200 * 7 6 5 33 33 H 1.08994 * 109.47566 * 184.99802 * 7 6 5 34 34 H 1.09001 * 109.47678 * 60.00187 * 9 8 7 35 35 H 1.08998 * 109.47532 * 300.00132 * 9 8 7 36 36 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.49881 * 300.74752 * 20 18 2 38 38 H 1.08999 * 109.49879 * 60.81873 * 20 18 2 39 39 H 1.09000 * 109.52455 * 177.55788 * 21 20 18 40 40 H 1.09000 * 109.52361 * 297.68627 * 21 20 18 41 41 H 1.08999 * 109.50119 * 62.28756 * 22 21 20 42 42 H 1.09002 * 109.50124 * 182.36233 * 22 21 20 43 43 H 1.08995 * 109.45941 * 179.19456 * 23 22 21 44 44 H 1.09005 * 109.45963 * 299.17255 * 23 22 21 45 45 H 1.00900 * 111.00264 * 305.85999 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 1.6618 0.0169 2.4131 6 6 2.0921 -0.5736 3.6411 7 6 1.6350 0.2969 4.8134 8 8 0.2073 0.3008 4.8756 9 6 -0.3259 1.0893 5.9413 10 6 -1.8312 1.0222 5.9115 11 1 -2.3305 0.4356 5.1545 12 6 -2.5706 1.7046 6.8541 13 7 -1.9622 2.4137 7.7796 14 14 -4.4363 1.6208 6.8175 15 1 -4.8711 0.7626 5.6863 16 1 -4.9312 1.0459 8.0941 17 1 -4.9898 2.9876 6.6426 18 6 2.0400 -0.7214 -1.2491 19 1 3.1264 -0.7992 -1.2055 20 6 1.6351 0.0690 -2.4955 21 6 2.1301 -0.6668 -3.7437 22 6 1.5453 -2.0818 -3.7579 23 6 1.9527 -2.8099 -2.4749 24 7 1.4554 -2.0670 -1.3100 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7994 1.2058 29 1 1.6052 -1.7197 1.2954 30 1 3.1794 -0.6485 3.6470 31 1 1.6589 -1.5692 3.7370 32 1 1.9952 1.3158 4.6715 33 1 2.0380 -0.1047 5.7430 34 1 -0.0064 2.1247 5.8224 35 1 0.0365 0.7046 6.8946 36 1 -2.4823 2.8935 8.4431 37 1 0.5495 0.1590 -2.5325 38 1 2.0815 1.0627 -2.4570 39 1 1.8065 -0.1299 -4.6354 40 1 3.2186 -0.7217 -3.7265 41 1 0.4582 -2.0257 -3.8149 42 1 1.9274 -2.6248 -4.6223 43 1 1.5260 -3.8128 -2.4754 44 1 3.0395 -2.8776 -2.4253 45 1 1.6286 -2.5756 -0.4559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700253349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:17 Heat of formation + Delta-G solvation = -138.964807 kcal Electronic energy + Delta-G solvation = -21169.456477 eV Core-core repulsion = 17992.103874 eV Total energy + Delta-G solvation = -3177.352603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35112 -39.14636 -38.04467 -35.32344 -34.86427 -32.87636 -31.38174 -30.06122 -28.88682 -27.28815 -25.00957 -24.55633 -23.82519 -23.34830 -21.28827 -20.09692 -18.66946 -18.09160 -17.65055 -17.11170 -16.79465 -16.40603 -16.06404 -15.98905 -15.63394 -15.21803 -14.92398 -14.77087 -14.21516 -14.09206 -13.85680 -13.66131 -13.27504 -13.23530 -13.06639 -12.80071 -12.71286 -12.57428 -12.29967 -12.18309 -11.90450 -11.83059 -11.69720 -11.41214 -11.28769 -11.19912 -11.07776 -10.89344 -10.50087 -10.25009 -9.30809 -8.33262 -6.45594 1.39262 1.41183 1.56204 2.34702 2.69983 3.00250 3.18298 3.24001 3.76843 3.89470 3.98148 4.05094 4.13021 4.19320 4.25855 4.34406 4.39681 4.43876 4.51394 4.57516 4.59129 4.66571 4.73603 4.78728 4.81961 4.87731 4.91011 4.95346 5.01515 5.11868 5.12966 5.16045 5.23194 5.29973 5.35684 5.50993 5.54089 5.57803 5.94958 6.16662 6.32502 6.47976 6.53450 6.81516 7.26417 8.79489 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.003077 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.091496 B = 9098.413805 C = 9721.976015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 H 0.074 0.926 4 C 0.062 3.938 5 O -0.404 6.404 6 C 0.074 3.926 7 C 0.051 3.949 8 O -0.407 6.407 9 C 0.208 3.792 10 C -0.549 4.549 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.266 1.266 16 H -0.268 1.268 17 H -0.270 1.270 18 C 0.106 3.894 19 H 0.044 0.956 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.117 4.117 23 C 0.057 3.943 24 N -0.693 5.693 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.069 0.931 34 H -0.017 1.017 35 H -0.010 1.010 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -9.378 -21.839 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.015 4.015 5 O -0.324 6.324 6 C -0.002 4.002 7 C -0.026 4.026 8 O -0.327 6.327 9 C 0.133 3.867 10 C -0.586 4.586 11 H 0.077 0.923 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.190 1.190 16 H -0.193 1.193 17 H -0.196 1.196 18 C -0.004 4.004 19 H 0.062 0.938 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.072 4.072 24 N -0.327 5.327 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.001 0.999 35 H 0.008 0.992 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.202 -8.996 -22.148 26.400 hybrid contribution 0.442 0.015 1.034 1.125 sum 11.644 -8.980 -21.114 25.730 Atomic orbital electron populations 1.21571 0.94779 1.01962 1.00138 1.21150 0.96879 0.99640 0.92248 0.90761 1.22695 0.98668 0.95067 0.85024 1.87988 1.79552 1.50545 1.14283 1.22545 0.99046 0.95867 0.82718 1.22659 0.82681 0.99600 0.97690 1.87871 1.19890 1.71469 1.53451 1.19840 0.93944 0.88528 0.84384 1.21413 0.91461 1.31132 1.14617 0.92293 1.25981 1.05264 0.93959 0.94059 1.70074 1.38182 1.31847 1.16891 0.85117 0.77074 0.78502 0.78603 1.18965 1.19330 1.19551 1.21332 0.95823 0.89385 0.93863 0.93811 1.21674 1.01778 0.98357 0.93509 1.21569 1.00360 0.96083 0.97617 1.21593 1.01102 0.95804 0.97002 1.21961 0.97362 0.97264 0.90567 1.60314 1.62789 1.03251 1.06347 0.95428 0.92329 0.92113 0.92092 0.92830 0.88877 0.92552 0.94052 0.91304 0.99922 0.99202 0.91967 0.91726 0.91218 0.91156 0.91884 0.92184 0.90385 0.90213 0.94891 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.63 71.98 0.62 -2.86 16 2 C -0.08 -1.85 2.45 -10.80 -0.03 -1.88 16 3 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.06 1.49 4.97 71.98 0.36 1.85 16 5 O -0.40 -13.65 9.84 -144.34 -1.42 -15.07 16 6 C 0.07 2.27 6.32 71.98 0.45 2.73 16 7 C 0.05 1.98 6.32 71.98 0.45 2.43 16 8 O -0.41 -21.31 10.29 -144.34 -1.49 -22.79 16 9 C 0.21 12.27 5.69 71.24 0.41 12.68 16 10 C -0.55 -34.15 9.43 25.60 0.24 -33.91 16 11 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 14 Si 0.98 45.67 29.54 68.60 2.03 47.70 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 C 0.11 1.88 2.19 44.94 0.10 1.98 16 19 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 20 C -0.12 -1.92 5.15 30.65 0.16 -1.76 16 21 C -0.12 -1.58 6.00 30.67 0.18 -1.40 16 22 C -0.12 -1.54 6.09 30.65 0.19 -1.35 16 23 C 0.06 0.79 6.55 86.33 0.57 1.36 16 24 N -0.69 -12.00 5.52 -491.69 -2.72 -14.71 16 25 H 0.03 0.93 7.82 -2.39 -0.02 0.92 16 26 H 0.06 1.45 6.55 -2.38 -0.02 1.44 16 27 H 0.06 1.67 7.47 -2.39 -0.02 1.65 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.22 6.86 -2.38 -0.02 1.20 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.06 1.24 6.53 -2.39 -0.02 1.22 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.34 5.69 7.11 -89.69 -0.64 5.05 16 Total: -1.00 -70.90 353.80 1.15 -69.75 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.29 Total: 11.41 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.16 Total: -19.34 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -2.43 Total: -71.66 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.91 Total: -37.87 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.90 1.15 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700253349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.211 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds