Wall clock time and date at job start Mon Mar 30 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99347 * 2 1 4 4 O 1.43743 * 109.88116 * 121.08634 * 2 1 3 5 5 C 1.44384 * 106.97754 * 145.93770 * 4 2 1 6 6 H 1.09000 * 110.61847 * 78.44211 * 5 4 2 7 7 C 1.53002 * 110.61885 * 201.27913 * 5 4 2 8 8 C 1.54996 * 103.49094 * 319.93784 * 5 4 2 9 9 H 1.08993 * 110.90794 * 278.82581 * 8 5 4 10 10 C 1.53001 * 110.90385 * 155.21759 * 8 5 4 11 11 C 1.54104 * 109.88289 * 238.91809 * 2 1 3 12 12 H 1.09000 * 110.48442 * 357.35134 * 11 2 1 13 13 C 1.52997 * 110.48833 * 119.86811 * 11 2 1 14 14 N 1.46904 * 109.47068 * 293.54684 * 13 11 2 15 15 C 1.46902 * 110.99557 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46748 * 180.02562 * 15 14 13 17 17 O 1.42906 * 109.47212 * 65.00172 * 16 15 14 18 18 C 1.42894 * 114.00137 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47263 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.09004 * 109.46437 * 181.08121 * 1 2 3 28 28 H 1.09000 * 109.46898 * 301.08200 * 1 2 3 29 29 H 1.08997 * 109.47266 * 61.08528 * 1 2 3 30 30 H 1.09005 * 109.46956 * 58.54979 * 7 5 4 31 31 H 1.08995 * 109.47091 * 178.54773 * 7 5 4 32 32 H 1.09004 * 109.47261 * 298.54862 * 7 5 4 33 33 H 1.08994 * 109.47423 * 307.30029 * 10 8 5 34 34 H 1.09002 * 109.46903 * 67.29978 * 10 8 5 35 35 H 1.09005 * 109.46567 * 187.29552 * 10 8 5 36 36 H 1.09004 * 109.46782 * 173.54851 * 13 11 2 37 37 H 1.08998 * 109.47455 * 53.54874 * 13 11 2 38 38 H 1.00898 * 110.99554 * 56.05009 * 14 13 11 39 39 H 1.08996 * 109.47044 * 60.00376 * 15 14 13 40 40 H 1.08994 * 109.47663 * 300.00026 * 15 14 13 41 41 H 1.09001 * 109.47860 * 305.00477 * 16 15 14 42 42 H 1.09006 * 109.47541 * 184.99917 * 16 15 14 43 43 H 1.09001 * 109.47678 * 60.00187 * 18 17 16 44 44 H 1.09006 * 109.47375 * 299.99854 * 18 17 16 45 45 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0188 -0.6980 1.1576 5 6 3.2380 -1.3642 0.7646 6 1 4.0685 -0.6589 0.7356 7 6 3.5497 -2.5220 1.7150 8 6 2.9196 -1.8915 -0.6577 9 1 2.3541 -2.8220 -0.6099 10 6 4.2021 -2.0752 -1.4715 11 6 2.0541 -0.7482 -1.2411 12 1 1.2246 -1.1528 -1.8211 13 6 2.9074 0.1816 -2.1061 14 7 2.0595 1.2397 -2.6713 15 6 2.8468 2.1532 -3.5102 16 6 1.9317 3.2394 -4.0792 17 8 1.4283 4.0454 -3.0119 18 6 0.5585 5.0962 -3.4374 19 6 0.0894 5.8773 -2.2369 20 1 0.4227 5.5992 -1.2479 21 6 -0.7642 6.9474 -2.4013 22 7 -1.1696 7.2863 -3.6056 23 14 -1.3461 7.9150 -0.9132 24 1 -2.2490 9.0079 -1.3555 25 1 -2.0779 7.0109 0.0100 26 1 -0.1736 8.4960 -0.2111 27 1 -0.3632 -1.0276 0.0194 28 1 -0.3633 0.5306 0.8801 29 1 -0.3633 0.4969 -0.8995 30 1 2.7196 -3.2286 1.7113 31 1 4.4580 -3.0271 1.3866 32 1 3.6933 -2.1354 2.7240 33 1 4.7810 -1.1519 -1.4508 34 1 4.7926 -2.8841 -1.0413 35 1 3.9461 -2.3206 -2.5023 36 1 3.3621 -0.3905 -2.9150 37 1 3.6897 0.6308 -1.4944 38 1 1.5761 1.7433 -1.9428 39 1 3.3007 1.5946 -4.3287 40 1 3.6289 2.6161 -2.9086 41 1 1.0991 2.7737 -4.6065 42 1 2.4961 3.8643 -4.7713 43 1 -0.3026 4.6694 -3.9517 44 1 1.0949 5.7596 -4.1160 45 1 -0.8677 6.7835 -4.3783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701082026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:08 Heat of formation + Delta-G solvation = -118.709208 kcal Electronic energy + Delta-G solvation = -21648.519296 eV Core-core repulsion = 18472.045041 eV Total energy + Delta-G solvation = -3176.474254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36707 -37.35812 -35.77734 -34.04489 -33.13842 -32.53555 -29.57792 -29.22101 -27.07582 -26.13965 -24.38856 -22.65622 -22.53749 -21.54894 -21.32590 -19.62647 -17.06277 -16.38586 -16.20683 -15.93660 -15.56553 -15.40346 -14.83362 -14.14552 -13.94572 -13.81240 -13.70953 -13.26653 -13.15731 -12.79275 -12.65450 -12.43475 -12.37103 -12.29511 -11.94421 -11.76715 -11.58134 -11.43611 -11.22878 -11.13842 -10.74887 -10.67785 -10.53336 -10.47612 -10.21838 -10.08750 -9.68651 -8.87965 -8.64350 -8.31103 -8.25769 -6.47271 -4.16128 3.42975 3.45549 3.64329 3.67858 4.07160 4.39610 4.43289 4.46272 4.65901 4.79062 4.85965 4.99135 5.12552 5.16238 5.20918 5.25281 5.30825 5.33380 5.38421 5.43852 5.44404 5.54434 5.59741 5.67875 5.70020 5.76516 5.85839 5.92407 5.95102 5.96416 6.06838 6.08183 6.14703 6.21448 6.28510 6.75458 6.88476 7.10719 7.14451 7.54070 7.86913 8.16425 8.61673 8.79474 9.54561 10.93015 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.003772 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.967982 B = 7421.004486 C = 8325.513347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 H 0.067 0.933 4 O -0.372 6.372 5 C 0.074 3.926 6 H 0.067 0.933 7 C -0.144 4.144 8 C -0.115 4.115 9 H 0.086 0.914 10 C -0.144 4.144 11 C -0.114 4.114 12 H 0.095 0.905 13 C 0.066 3.934 14 N -0.689 5.689 15 C 0.067 3.933 16 C 0.059 3.941 17 O -0.391 6.391 18 C 0.189 3.811 19 C -0.597 4.597 20 H 0.060 0.940 21 C 0.017 3.983 22 N -0.911 5.911 23 Si 1.078 2.922 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.286 1.286 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.354 0.646 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.041 0.959 43 H -0.004 1.004 44 H -0.006 1.006 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.244 -20.244 4.726 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.085 0.915 4 O -0.292 6.292 5 C 0.017 3.983 6 H 0.085 0.915 7 C -0.202 4.202 8 C -0.134 4.134 9 H 0.104 0.896 10 C -0.202 4.202 11 C -0.133 4.133 12 H 0.113 0.887 13 C -0.064 4.064 14 N -0.322 5.322 15 C -0.063 4.063 16 C -0.019 4.019 17 O -0.310 6.310 18 C 0.114 3.886 19 C -0.635 4.635 20 H 0.078 0.922 21 C -0.186 4.186 22 N -0.547 5.547 23 Si 0.905 3.095 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.212 1.212 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.174 0.826 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.030 -19.358 5.056 21.951 hybrid contribution 1.523 -0.718 -0.447 1.742 sum 10.553 -20.076 4.609 23.144 Atomic orbital electron populations 1.21926 0.93207 1.02365 1.03201 1.22797 0.95566 0.95475 0.84203 0.91499 1.88890 1.39374 1.67531 1.33433 1.23159 0.88221 0.93802 0.93158 0.91544 1.21764 1.01781 0.97151 0.99466 1.22742 0.96982 0.98706 0.95018 0.89603 1.21809 0.96422 1.01928 0.99999 1.22649 0.98936 0.95306 0.96384 0.88702 1.22079 0.94056 0.93236 0.97003 1.60506 1.29395 1.15214 1.27110 1.21926 0.94803 0.92505 0.97027 1.22351 0.96626 0.91872 0.91043 1.87816 1.66072 1.45593 1.31561 1.20260 0.87323 0.84277 0.96724 1.21893 1.31796 1.15992 0.93815 0.92214 1.25931 0.93991 0.95975 1.02707 1.70803 1.43730 1.41442 0.98687 0.83415 0.76421 0.75980 0.73663 1.20612 1.21142 1.21247 0.92305 0.91948 0.90338 0.91890 0.91290 0.91903 0.92100 0.92505 0.91942 0.90552 0.95408 0.82561 0.90567 0.94780 0.93496 0.94127 0.98610 0.98854 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.36 37.16 0.35 -1.54 16 2 C 0.08 0.99 3.21 -26.16 -0.08 0.91 16 3 H 0.07 0.96 6.97 -51.93 -0.36 0.60 16 4 O -0.37 -4.98 10.89 -35.23 -0.38 -5.36 16 5 C 0.07 0.76 3.42 -25.68 -0.09 0.68 16 6 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 7 C -0.14 -1.19 9.67 37.16 0.36 -0.83 16 8 C -0.12 -1.06 3.10 -88.61 -0.27 -1.33 16 9 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 10 C -0.14 -1.08 8.01 37.16 0.30 -0.79 16 11 C -0.11 -1.26 2.88 -89.09 -0.26 -1.51 16 12 H 0.09 1.08 7.70 -51.93 -0.40 0.68 16 13 C 0.07 0.76 3.73 -3.82 -0.01 0.75 16 14 N -0.69 -10.08 6.50 -113.78 -0.74 -10.82 16 15 C 0.07 1.00 6.11 -3.82 -0.02 0.98 16 16 C 0.06 1.10 6.28 37.16 0.23 1.33 16 17 O -0.39 -9.40 9.85 -35.23 -0.35 -9.74 16 18 C 0.19 5.18 5.00 36.01 0.18 5.36 16 19 C -0.60 -17.84 9.43 -34.44 -0.32 -18.17 16 20 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 21 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 22 N -0.91 -28.11 13.65 55.43 0.76 -27.35 16 23 Si 1.08 25.62 29.90 -169.99 -5.08 20.54 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.47 6.73 -51.93 -0.35 0.13 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16 36 H 0.08 0.80 6.67 -51.93 -0.35 0.45 16 37 H 0.03 0.33 7.66 -51.93 -0.40 -0.06 16 38 H 0.35 5.88 7.02 -39.29 -0.28 5.60 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.00 -0.11 8.01 -51.93 -0.42 -0.52 16 44 H -0.01 -0.17 8.01 -51.93 -0.42 -0.59 16 45 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -31.98 354.77 -8.54 -40.52 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.34 Total: 0.65 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 0.26 Total: -13.77 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.02 Total: -38.18 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.73 Total: -15.11 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.98 -8.54 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701082026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.190 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds