Wall clock time and date at job start Mon Mar 30 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99347 * 2 1 4 4 O 1.43743 * 109.88116 * 121.08634 * 2 1 3 5 5 C 1.44384 * 106.97754 * 145.93770 * 4 2 1 6 6 H 1.09000 * 110.61847 * 78.44211 * 5 4 2 7 7 C 1.53002 * 110.61885 * 201.27913 * 5 4 2 8 8 C 1.54996 * 103.49094 * 319.93784 * 5 4 2 9 9 H 1.08993 * 110.90794 * 278.82581 * 8 5 4 10 10 C 1.53001 * 110.90385 * 155.21759 * 8 5 4 11 11 C 1.54104 * 109.88289 * 238.91809 * 2 1 3 12 12 H 1.09000 * 110.48442 * 357.35134 * 11 2 1 13 13 C 1.52997 * 110.48833 * 119.86811 * 11 2 1 14 14 N 1.46904 * 109.47068 * 293.54684 * 13 11 2 15 15 C 1.46902 * 110.99557 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46748 * 180.02562 * 15 14 13 17 17 O 1.42906 * 109.47212 * 65.00172 * 16 15 14 18 18 C 1.42894 * 114.00137 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47263 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.09004 * 109.46437 * 181.08121 * 1 2 3 28 28 H 1.09000 * 109.46898 * 301.08200 * 1 2 3 29 29 H 1.08997 * 109.47266 * 61.08528 * 1 2 3 30 30 H 1.09005 * 109.46956 * 58.54979 * 7 5 4 31 31 H 1.08995 * 109.47091 * 178.54773 * 7 5 4 32 32 H 1.09004 * 109.47261 * 298.54862 * 7 5 4 33 33 H 1.08994 * 109.47423 * 307.30029 * 10 8 5 34 34 H 1.09002 * 109.46903 * 67.29978 * 10 8 5 35 35 H 1.09005 * 109.46567 * 187.29552 * 10 8 5 36 36 H 1.09004 * 109.46782 * 173.54851 * 13 11 2 37 37 H 1.08998 * 109.47455 * 53.54874 * 13 11 2 38 38 H 1.00898 * 110.99554 * 56.05009 * 14 13 11 39 39 H 1.08996 * 109.47044 * 60.00376 * 15 14 13 40 40 H 1.08994 * 109.47663 * 300.00026 * 15 14 13 41 41 H 1.09001 * 109.47860 * 305.00477 * 16 15 14 42 42 H 1.09006 * 109.47541 * 184.99917 * 16 15 14 43 43 H 1.09001 * 109.47678 * 60.00187 * 18 17 16 44 44 H 1.09006 * 109.47375 * 299.99854 * 18 17 16 45 45 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0188 -0.6980 1.1576 5 6 3.2380 -1.3642 0.7646 6 1 4.0685 -0.6589 0.7356 7 6 3.5497 -2.5220 1.7150 8 6 2.9196 -1.8915 -0.6577 9 1 2.3541 -2.8220 -0.6099 10 6 4.2021 -2.0752 -1.4715 11 6 2.0541 -0.7482 -1.2411 12 1 1.2246 -1.1528 -1.8211 13 6 2.9074 0.1816 -2.1061 14 7 2.0595 1.2397 -2.6713 15 6 2.8468 2.1532 -3.5102 16 6 1.9317 3.2394 -4.0792 17 8 1.4283 4.0454 -3.0119 18 6 0.5585 5.0962 -3.4374 19 6 0.0894 5.8773 -2.2369 20 1 0.4227 5.5992 -1.2479 21 6 -0.7642 6.9474 -2.4013 22 7 -1.1696 7.2863 -3.6056 23 14 -1.3461 7.9150 -0.9132 24 1 -2.2490 9.0079 -1.3555 25 1 -2.0779 7.0109 0.0100 26 1 -0.1736 8.4960 -0.2111 27 1 -0.3632 -1.0276 0.0194 28 1 -0.3633 0.5306 0.8801 29 1 -0.3633 0.4969 -0.8995 30 1 2.7196 -3.2286 1.7113 31 1 4.4580 -3.0271 1.3866 32 1 3.6933 -2.1354 2.7240 33 1 4.7810 -1.1519 -1.4508 34 1 4.7926 -2.8841 -1.0413 35 1 3.9461 -2.3206 -2.5023 36 1 3.3621 -0.3905 -2.9150 37 1 3.6897 0.6308 -1.4944 38 1 1.5761 1.7433 -1.9428 39 1 3.3007 1.5946 -4.3287 40 1 3.6289 2.6161 -2.9086 41 1 1.0991 2.7737 -4.6065 42 1 2.4961 3.8643 -4.7713 43 1 -0.3026 4.6694 -3.9517 44 1 1.0949 5.7596 -4.1160 45 1 -0.8677 6.7835 -4.3783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701082026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:08 Heat of formation + Delta-G solvation = -140.450195 kcal Electronic energy + Delta-G solvation = -21649.462056 eV Core-core repulsion = 18472.045041 eV Total energy + Delta-G solvation = -3177.417014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26626 -39.04067 -37.07402 -35.30447 -34.81147 -33.70833 -30.70639 -30.23868 -28.65278 -27.57512 -25.33937 -24.76689 -23.57825 -22.84689 -22.24869 -20.49691 -19.23210 -17.65506 -17.33644 -17.23643 -16.81086 -16.62414 -16.04252 -15.72243 -15.36724 -15.17741 -14.86745 -14.52479 -14.27304 -14.13924 -13.70946 -13.60981 -13.22641 -13.21086 -13.15876 -13.00226 -12.83100 -12.79250 -12.56677 -12.47999 -12.09431 -11.98636 -11.91163 -11.43982 -11.41927 -11.35010 -10.88426 -10.86026 -10.63454 -10.37959 -9.45393 -8.84975 -6.56158 1.51702 1.60341 1.81511 2.47988 2.81406 3.01115 3.02076 3.06698 3.53346 3.63166 3.81185 3.92141 4.06678 4.17851 4.26213 4.30449 4.34850 4.40637 4.43669 4.45296 4.48989 4.52246 4.59005 4.67861 4.72799 4.76745 4.79316 4.85623 4.89712 4.99152 5.02133 5.06226 5.11825 5.17365 5.26763 5.31450 5.38924 5.64826 5.89873 5.94077 6.06269 6.27438 6.31465 6.62550 7.24655 8.56262 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.003772 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.967982 B = 7421.004486 C = 8325.513347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 H 0.045 0.955 4 O -0.394 6.394 5 C 0.065 3.935 6 H 0.063 0.937 7 C -0.141 4.141 8 C -0.106 4.106 9 H 0.094 0.906 10 C -0.142 4.142 11 C -0.109 4.109 12 H 0.093 0.907 13 C 0.070 3.930 14 N -0.697 5.697 15 C 0.075 3.925 16 C 0.050 3.950 17 O -0.404 6.404 18 C 0.199 3.801 19 C -0.624 4.624 20 H 0.053 0.947 21 C -0.028 4.028 22 N -0.928 5.928 23 Si 1.127 2.873 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.267 1.267 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.025 0.975 38 H 0.339 0.661 39 H 0.111 0.889 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.051 0.949 43 H -0.018 1.018 44 H -0.018 1.018 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.295 -21.681 5.168 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.063 0.937 4 O -0.314 6.314 5 C 0.008 3.992 6 H 0.081 0.919 7 C -0.198 4.198 8 C -0.125 4.125 9 H 0.112 0.888 10 C -0.199 4.199 11 C -0.128 4.128 12 H 0.111 0.889 13 C -0.058 4.058 14 N -0.329 5.329 15 C -0.054 4.054 16 C -0.027 4.027 17 O -0.323 6.323 18 C 0.124 3.876 19 C -0.661 4.661 20 H 0.071 0.929 21 C -0.226 4.226 22 N -0.564 5.564 23 Si 0.945 3.055 24 H -0.200 1.200 25 H -0.192 1.192 26 H -0.192 1.192 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.044 0.956 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.069 0.931 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.116 -20.838 5.476 23.802 hybrid contribution 1.252 -0.348 -0.623 1.441 sum 11.368 -21.186 4.852 24.528 Atomic orbital electron populations 1.21880 0.93409 1.02803 1.02305 1.22735 0.95486 0.94734 0.85272 0.93745 1.88869 1.40724 1.67850 1.33998 1.23410 0.87021 0.94293 0.94517 0.91874 1.21775 1.02860 0.96360 0.98769 1.22719 0.97587 0.97964 0.94218 0.88815 1.21806 0.95473 1.02465 1.00160 1.22592 0.99184 0.95643 0.95355 0.88857 1.22138 0.93602 0.92484 0.97597 1.60573 1.30059 1.15370 1.26906 1.21922 0.93630 0.91804 0.98042 1.22691 0.97268 0.92323 0.90370 1.87778 1.65498 1.45239 1.33832 1.19921 0.87243 0.84854 0.95576 1.22259 1.32568 1.17007 0.94273 0.92853 1.27583 0.93472 0.96789 1.04727 1.70927 1.44571 1.41800 0.99137 0.82838 0.76916 0.75109 0.70599 1.20039 1.19229 1.19249 0.91133 0.92859 0.91197 0.91839 0.88953 0.92378 0.92414 0.90804 0.91227 0.88531 0.95632 0.84264 0.87132 0.95106 0.93597 0.93131 1.00057 1.00060 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.36 71.98 0.67 -3.11 16 2 C 0.08 1.96 3.21 30.97 0.10 2.06 16 3 H 0.04 1.33 6.97 -2.38 -0.02 1.32 16 4 O -0.39 -10.47 10.89 -148.98 -1.62 -12.09 16 5 C 0.06 1.25 3.42 31.28 0.11 1.35 16 6 H 0.06 1.24 8.01 -2.39 -0.02 1.22 16 7 C -0.14 -2.05 9.67 71.98 0.70 -1.35 16 8 C -0.11 -1.72 3.10 -9.49 -0.03 -1.75 16 9 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 10 C -0.14 -1.70 8.01 71.98 0.58 -1.12 16 11 C -0.11 -2.28 2.88 -9.80 -0.03 -2.31 16 12 H 0.09 2.00 7.70 -2.39 -0.02 1.99 16 13 C 0.07 1.53 3.73 86.30 0.32 1.85 16 14 N -0.70 -19.89 6.50 -513.89 -3.34 -23.23 16 15 C 0.08 2.14 6.11 86.30 0.53 2.67 16 16 C 0.05 1.86 6.28 71.98 0.45 2.32 16 17 O -0.40 -19.76 9.85 -148.98 -1.47 -21.23 16 18 C 0.20 11.24 5.00 71.24 0.36 11.60 16 19 C -0.62 -37.89 9.43 25.60 0.24 -37.65 16 20 H 0.05 3.24 7.81 -2.91 -0.02 3.21 16 21 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 22 N -0.93 -57.88 13.65 21.45 0.29 -57.59 16 23 Si 1.13 50.90 29.90 68.60 2.05 52.95 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.74 6.73 -2.39 -0.02 0.73 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.76 7.59 -2.38 -0.02 0.74 16 36 H 0.10 1.73 6.67 -2.38 -0.02 1.72 16 37 H 0.03 0.58 7.66 -2.39 -0.02 0.56 16 38 H 0.34 11.44 7.02 -89.70 -0.63 10.81 16 39 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 43 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 44 H -0.02 -1.05 8.01 -2.38 -0.02 -1.07 16 45 H 0.26 16.09 7.22 -92.71 -0.67 15.42 16 Total: -1.00 -69.25 354.77 0.77 -68.47 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.41 Total: 19.35 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.46 Total: -26.63 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -3.05 Total: -80.81 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -3.09 Total: -33.32 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Total: -69.25 0.77 -68.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701082026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.979 kcal (2) G-P(sol) polarization free energy of solvation -69.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds