Wall clock time and date at job start Mon Mar 30 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.41949 * 2 1 4 4 O 1.44433 * 110.37247 * 122.30809 * 2 1 3 5 5 C 1.44422 * 105.27452 * 159.34493 * 4 2 1 6 6 H 1.09001 * 110.37394 * 78.31441 * 5 4 2 7 7 C 1.52991 * 110.37314 * 200.65864 * 5 4 2 8 8 C 1.54481 * 104.80535 * 319.49061 * 5 4 2 9 9 H 1.08995 * 110.63589 * 142.67963 * 8 5 4 10 10 C 1.52999 * 110.51111 * 265.33581 * 8 5 4 11 11 C 1.54479 * 110.37378 * 237.69217 * 2 1 3 12 12 H 1.08995 * 110.50884 * 335.83266 * 11 2 1 13 13 C 1.52998 * 110.51204 * 98.54605 * 11 2 1 14 14 N 1.46904 * 109.46868 * 289.64136 * 13 11 2 15 15 C 1.46902 * 110.99756 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47017 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.47009 * 64.99655 * 16 15 14 18 18 C 1.42897 * 113.99921 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47248 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00064 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00195 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00477 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47271 * 90.00333 * 23 21 19 25 25 H 1.48503 * 109.46899 * 210.00371 * 23 21 19 26 26 H 1.48496 * 109.47222 * 329.99996 * 23 21 19 27 27 H 1.09001 * 109.47320 * 182.30787 * 1 2 3 28 28 H 1.09005 * 109.47541 * 302.30989 * 1 2 3 29 29 H 1.09005 * 109.47229 * 62.31049 * 1 2 3 30 30 H 1.09002 * 109.47265 * 175.37975 * 7 5 4 31 31 H 1.09002 * 109.47134 * 295.37907 * 7 5 4 32 32 H 1.09004 * 109.47274 * 55.38002 * 7 5 4 33 33 H 1.09002 * 109.47228 * 174.64215 * 10 8 5 34 34 H 1.09002 * 109.47150 * 294.64118 * 10 8 5 35 35 H 1.09005 * 109.47227 * 54.63809 * 10 8 5 36 36 H 1.08993 * 109.47171 * 49.64121 * 13 11 2 37 37 H 1.09003 * 109.47190 * 169.64483 * 13 11 2 38 38 H 1.00896 * 110.99920 * 56.04863 * 14 13 11 39 39 H 1.08997 * 109.46593 * 299.99835 * 15 14 13 40 40 H 1.08999 * 109.47291 * 59.99864 * 15 14 13 41 41 H 1.08994 * 109.47148 * 184.99889 * 16 15 14 42 42 H 1.09002 * 109.46883 * 304.99945 * 16 15 14 43 43 H 1.09008 * 109.46625 * 299.99838 * 18 17 16 44 44 H 1.09000 * 109.47222 * 59.99764 * 18 17 16 45 45 H 0.96997 * 120.00774 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0327 -0.7237 1.1444 5 6 3.3873 -1.0871 0.7996 6 1 4.0524 -0.2323 0.9221 7 6 3.8601 -2.2593 1.6616 8 6 3.3178 -1.5056 -0.6858 9 1 4.2105 -1.1790 -1.2191 10 6 3.1462 -3.0210 -0.8083 11 6 2.0677 -0.7740 -1.2240 12 1 1.3276 -1.4919 -1.5772 13 6 2.4540 0.1947 -2.3434 14 7 1.2393 0.7879 -2.9185 15 6 1.5721 1.7252 -3.9995 16 6 0.2845 2.3207 -4.5726 17 8 -0.3612 3.1110 -3.5723 18 6 -1.5808 3.7156 -4.0070 19 6 -2.1721 4.5212 -2.8790 20 1 -1.6672 4.5665 -1.9253 21 6 -3.3581 5.1995 -3.0640 22 7 -3.8739 5.9029 -2.0798 23 14 -4.2317 5.1205 -4.7133 24 1 -5.1746 3.9733 -4.7196 25 1 -4.9844 6.3812 -4.9356 26 1 -3.2306 4.9444 -5.7958 27 1 -0.3634 -1.0268 0.0414 28 1 -0.3634 0.5493 0.8686 29 1 -0.3634 0.4776 -0.9100 30 1 4.8510 -2.5744 1.3346 31 1 3.9038 -1.9483 2.7054 32 1 3.1623 -3.0904 1.5591 33 1 3.0039 -3.2871 -1.8558 34 1 4.0362 -3.5197 -0.4245 35 1 2.2762 -3.3360 -0.2320 36 1 3.0871 0.9841 -1.9385 37 1 2.9973 -0.3447 -3.1194 38 1 0.6851 1.2390 -2.2062 39 1 2.1993 2.5252 -3.6063 40 1 2.1091 1.1960 -4.7868 41 1 0.5248 2.9472 -5.4315 42 1 -0.3806 1.5155 -4.8849 43 1 -1.3795 4.3711 -4.8544 44 1 -2.2844 2.9392 -4.3073 45 1 -4.7085 6.3798 -2.2098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701082028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:15 Heat of formation + Delta-G solvation = -109.312740 kcal Electronic energy + Delta-G solvation = -21595.388780 eV Core-core repulsion = 18419.321987 eV Total energy + Delta-G solvation = -3176.066793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28651 -37.41407 -35.77219 -34.04149 -32.92194 -32.38580 -29.59979 -29.12006 -27.87913 -26.73530 -24.29070 -22.71106 -21.93634 -21.51285 -20.77440 -19.91293 -16.93750 -16.71202 -16.28186 -15.70348 -15.59898 -15.00799 -14.95977 -14.48351 -14.01500 -13.99799 -13.76663 -13.32606 -12.83846 -12.76109 -12.55721 -12.49414 -12.37084 -12.09322 -11.93766 -11.78223 -11.66274 -11.55553 -11.11941 -10.95013 -10.78937 -10.70481 -10.66451 -10.45372 -10.37790 -9.87750 -9.69158 -9.20395 -8.87215 -8.48954 -8.31441 -6.12757 -4.12050 3.24403 3.31374 3.32652 3.73048 4.11715 4.34623 4.47088 4.50435 4.66154 4.71421 4.86278 5.01776 5.14173 5.18845 5.19207 5.24613 5.33895 5.36782 5.41481 5.44866 5.53926 5.59224 5.61794 5.64246 5.79580 5.82168 5.89451 5.90561 5.98777 6.01071 6.05981 6.11892 6.17080 6.23734 6.39104 6.59886 6.87743 6.98538 7.12746 7.55082 7.59688 7.98948 8.64319 8.97632 9.46453 11.00176 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.003541 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.223533 B = 7906.114789 C = 8556.130275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.066 0.934 4 O -0.368 6.368 5 C 0.073 3.927 6 H 0.064 0.936 7 C -0.147 4.147 8 C -0.118 4.118 9 H 0.081 0.919 10 C -0.140 4.140 11 C -0.113 4.113 12 H 0.096 0.904 13 C 0.068 3.932 14 N -0.689 5.689 15 C 0.065 3.935 16 C 0.057 3.943 17 O -0.385 6.385 18 C 0.171 3.829 19 C -0.519 4.519 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.267 1.267 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.356 0.644 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.002 0.998 44 H 0.000 1.000 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.982 -16.633 0.901 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 H 0.084 0.916 4 O -0.288 6.288 5 C 0.015 3.985 6 H 0.082 0.918 7 C -0.204 4.204 8 C -0.137 4.137 9 H 0.100 0.900 10 C -0.197 4.197 11 C -0.132 4.132 12 H 0.114 0.886 13 C -0.062 4.062 14 N -0.324 5.324 15 C -0.064 4.064 16 C -0.021 4.021 17 O -0.304 6.304 18 C 0.096 3.904 19 C -0.557 4.557 20 H 0.100 0.900 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.191 1.191 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.177 0.823 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.654 -17.041 0.911 23.157 hybrid contribution -0.183 0.921 -0.846 1.264 sum 15.470 -16.120 0.065 22.343 Atomic orbital electron populations 1.21884 0.92368 1.02802 1.03510 1.23083 0.95952 0.94913 0.84329 0.91640 1.89149 1.26552 1.74580 1.38536 1.22949 0.85237 0.96917 0.93412 0.91763 1.21869 1.01071 0.97759 0.99697 1.22537 0.98394 0.96694 0.96072 0.90029 1.21857 1.01933 0.94192 1.01759 1.22725 0.97424 0.97859 0.95156 0.88608 1.21972 0.92141 0.96241 0.95822 1.60574 1.18994 1.37535 1.15270 1.21938 0.96271 0.93580 0.94631 1.22389 0.93812 0.94131 0.91750 1.87840 1.39286 1.66006 1.37276 1.20578 0.81590 0.91789 0.96447 1.20879 1.06901 1.28741 0.99217 0.90020 1.24764 0.96636 0.94754 0.96786 1.69870 1.20126 1.31663 1.31670 0.86849 0.80241 0.78009 0.84630 1.19880 1.20816 1.19134 0.91996 0.91824 0.89804 0.91368 0.92218 0.91344 0.92550 0.92390 0.92070 0.95324 0.91023 0.82274 0.94623 0.90545 0.93955 0.93349 0.98058 0.98274 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.41 37.15 0.35 -1.65 16 2 C 0.07 0.95 3.04 -25.96 -0.08 0.88 16 3 H 0.07 0.88 7.74 -51.93 -0.40 0.48 16 4 O -0.37 -4.90 11.04 -35.23 -0.39 -5.29 16 5 C 0.07 0.74 3.84 -25.96 -0.10 0.64 16 6 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 7 C -0.15 -1.21 8.42 37.15 0.31 -0.89 16 8 C -0.12 -1.08 3.28 -89.05 -0.29 -1.38 16 9 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 10 C -0.14 -1.13 7.74 37.16 0.29 -0.84 16 11 C -0.11 -1.24 2.54 -89.05 -0.23 -1.47 16 12 H 0.10 1.13 7.46 -51.93 -0.39 0.74 16 13 C 0.07 0.78 4.89 -3.82 -0.02 0.76 16 14 N -0.69 -9.74 6.50 -113.78 -0.74 -10.48 16 15 C 0.07 0.93 6.11 -3.82 -0.02 0.90 16 16 C 0.06 0.99 6.28 37.16 0.23 1.22 16 17 O -0.38 -8.73 9.85 -35.23 -0.35 -9.07 16 18 C 0.17 4.32 4.76 36.00 0.17 4.49 16 19 C -0.52 -15.34 9.99 -34.44 -0.34 -15.68 16 20 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 21 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -27.55 13.96 55.43 0.77 -26.78 16 23 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.21 6.19 -51.93 -0.32 0.89 16 30 H 0.07 0.43 7.78 -51.93 -0.40 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.39 7.05 -51.93 -0.37 0.02 16 35 H 0.06 0.54 7.45 -51.93 -0.39 0.16 16 36 H 0.03 0.33 7.96 -51.93 -0.41 -0.08 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.36 5.68 5.69 -39.29 -0.22 5.45 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.00 0.04 7.20 -51.92 -0.37 -0.33 16 44 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -31.22 349.51 -8.16 -39.38 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.23 Total: 1.25 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 0.17 Total: -11.00 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.03 Total: -37.26 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.74 Total: -14.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.22 -8.16 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701082028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.930 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds