Wall clock time and date at job start Mon Mar 30 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99880 * 2 1 4 4 C 1.52995 * 109.47171 * 184.55441 * 3 2 1 5 5 N 1.46498 * 109.46823 * 65.21696 * 4 3 2 6 6 C 1.36940 * 120.00061 * 88.25600 * 5 4 3 7 7 H 1.08000 * 120.00171 * 34.92591 * 6 5 4 8 8 C 1.38812 * 119.99966 * 214.92485 * 6 5 4 9 9 N 1.31618 * 120.00344 * 215.70028 * 8 6 5 10 10 Si 1.86800 * 120.00018 * 35.69652 * 8 6 5 11 11 H 1.48504 * 109.46778 * 95.09879 * 10 8 6 12 12 H 1.48495 * 109.47503 * 215.09655 * 10 8 6 13 13 H 1.48503 * 109.47350 * 335.10252 * 10 8 6 14 14 C 1.46504 * 119.99975 * 268.25304 * 5 4 3 15 15 C 1.53002 * 109.47184 * 275.72870 * 14 5 4 16 16 O 1.42898 * 109.47019 * 65.52195 * 15 14 5 17 17 C 1.42898 * 114.00207 * 184.58670 * 16 15 14 18 18 C 1.52994 * 109.47603 * 87.73928 * 17 16 15 19 19 C 1.53001 * 109.47740 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47037 * 300.00443 * 19 18 17 21 21 C 1.53007 * 109.47312 * 59.99430 * 20 19 18 22 22 C 1.52994 * 109.46994 * 300.00010 * 21 20 19 23 23 H 1.08999 * 109.47033 * 304.76292 * 1 2 3 24 24 H 1.09000 * 109.47375 * 64.76960 * 1 2 3 25 25 H 1.09003 * 109.47079 * 184.76916 * 1 2 3 26 26 H 1.08998 * 109.46962 * 64.55364 * 3 2 1 27 27 H 1.09002 * 109.46911 * 304.55579 * 3 2 1 28 28 H 1.08999 * 109.47178 * 305.21378 * 4 3 2 29 29 H 1.09002 * 109.46878 * 185.21142 * 4 3 2 30 30 H 0.96996 * 120.00450 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47016 * 155.73049 * 14 5 4 32 32 H 1.08998 * 109.46990 * 35.72681 * 14 5 4 33 33 H 1.09004 * 109.47275 * 305.52566 * 15 14 5 34 34 H 1.08989 * 109.47491 * 185.52181 * 15 14 5 35 35 H 1.09000 * 109.47204 * 327.74012 * 17 16 15 36 36 H 1.08997 * 109.47239 * 300.00478 * 18 17 16 37 37 H 1.09002 * 109.46889 * 60.00344 * 18 17 16 38 38 H 1.08998 * 109.47233 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.46521 * 59.99657 * 19 18 17 40 40 H 1.09002 * 109.47151 * 299.99446 * 20 19 18 41 41 H 1.08997 * 109.47337 * 179.97438 * 20 19 18 42 42 H 1.08997 * 109.47072 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46999 * 59.99923 * 21 20 19 44 44 H 1.09000 * 109.47663 * 299.99959 * 22 21 20 45 45 H 1.09001 * 109.47075 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5312 1.1866 -0.1145 5 7 3.8794 0.6122 -1.4165 6 6 4.0571 1.4302 -2.5003 7 1 4.4942 2.4094 -2.3720 8 6 3.6753 1.0007 -3.7639 9 7 4.3856 1.3430 -4.8178 10 14 2.1535 -0.0631 -3.9687 11 1 0.9891 0.7972 -4.2995 12 1 2.3755 -1.0389 -5.0658 13 1 1.8859 -0.7931 -2.7034 14 6 4.0376 -0.8373 -1.5589 15 6 5.4562 -1.2382 -1.1493 16 8 5.6393 -0.9837 0.2449 17 6 6.9680 -1.2274 0.7107 18 6 7.8120 0.0356 0.5288 19 6 9.2349 -0.2255 1.0269 20 6 9.1951 -0.6032 2.5090 21 6 8.3511 -1.8664 2.6909 22 6 6.9283 -1.6052 2.1928 23 1 -0.3633 0.5860 0.8442 24 1 -0.3634 0.4380 -0.9296 25 1 -0.3633 -1.0241 0.0854 26 1 1.7546 1.8170 0.9280 27 1 1.6254 1.8745 -0.8464 28 1 3.9060 0.5408 0.6795 29 1 3.9809 2.1752 -0.0216 30 1 4.1190 1.0426 -5.7007 31 1 3.8653 -1.1212 -2.5971 32 1 3.3171 -1.3460 -0.9186 33 1 6.1781 -0.6564 -1.7226 34 1 5.6054 -2.2994 -1.3476 35 1 7.4091 -2.0444 0.1396 36 1 7.8407 0.3045 -0.5271 37 1 7.3710 0.8526 1.0999 38 1 9.8362 0.6743 0.8968 39 1 9.6756 -1.0424 0.4555 40 1 8.7543 0.2137 3.0804 41 1 10.2087 -0.7897 2.8638 42 1 8.3224 -2.1352 3.7468 43 1 8.7919 -2.6833 2.1195 44 1 6.4875 -0.7883 2.7642 45 1 6.3271 -2.5052 2.3220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701401003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:42 Heat of formation + Delta-G solvation = -89.058758 kcal Electronic energy + Delta-G solvation = -22562.302576 eV Core-core repulsion = 19387.114062 eV Total energy + Delta-G solvation = -3175.188514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 5.40 seconds Orbital eigenvalues (eV) -38.85829 -37.44840 -36.34175 -34.93785 -31.68163 -30.69448 -30.29443 -29.01603 -27.34577 -25.71300 -23.64110 -22.62744 -22.20046 -21.67307 -20.03332 -19.61433 -16.81953 -16.27823 -15.69493 -15.54316 -15.16721 -14.86761 -14.62369 -14.31353 -14.15748 -13.93152 -13.40959 -13.18440 -12.87701 -12.67655 -12.37174 -12.11877 -11.95914 -11.70978 -11.40525 -11.29011 -11.01778 -10.97090 -10.78516 -10.60198 -10.47579 -10.45813 -10.18721 -10.15093 -9.91681 -9.87147 -9.40931 -8.96667 -8.76873 -8.35007 -6.71760 -6.02453 -3.22948 3.43219 3.56316 3.70142 4.20648 4.49107 4.64799 4.80844 4.85777 5.05770 5.07815 5.33835 5.35874 5.39065 5.50310 5.59491 5.61960 5.62912 5.69393 5.75324 5.84871 5.97883 6.01323 6.05146 6.07787 6.12414 6.18272 6.26295 6.27511 6.27823 6.32867 6.35406 6.43133 6.53586 6.60952 6.66372 6.78660 6.99701 7.09267 7.85209 7.95541 8.09551 8.44220 9.10300 9.81893 10.30113 11.13506 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.005817 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.216373 B = 4812.241217 C = 5649.039611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.038 3.962 4 C 0.153 3.847 5 N -0.586 5.586 6 C -0.274 4.274 7 H 0.074 0.926 8 C 0.044 3.956 9 N -0.882 5.882 10 Si 0.831 3.169 11 H -0.295 1.295 12 H -0.297 1.297 13 H -0.246 1.246 14 C 0.159 3.841 15 C 0.044 3.956 16 O -0.371 6.371 17 C 0.091 3.909 18 C -0.140 4.140 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.114 4.114 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 -5.273 13.581 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.041 4.041 4 C 0.026 3.974 5 N -0.307 5.307 6 C -0.402 4.402 7 H 0.092 0.908 8 C -0.157 4.157 9 N -0.521 5.521 10 Si 0.657 3.343 11 H -0.223 1.223 12 H -0.224 1.224 13 H -0.169 1.169 14 C 0.032 3.968 15 C -0.035 4.035 16 O -0.290 6.290 17 C 0.032 3.968 18 C -0.178 4.178 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.124 -5.361 13.513 15.112 hybrid contribution -1.049 -0.302 -0.704 1.299 sum 3.075 -5.663 12.809 14.339 Atomic orbital electron populations 1.22611 0.83274 1.01435 0.99092 1.87940 1.17762 1.28843 1.95124 1.23507 0.98659 0.83924 0.98016 1.21002 0.89021 0.98165 0.89217 1.43907 1.79531 1.01536 1.05752 1.18713 1.35647 1.01120 0.84677 0.90838 1.25406 0.97757 0.97284 0.95266 1.70101 1.35867 1.46881 0.99289 0.87496 0.87596 0.80811 0.78362 1.22256 1.22444 1.16943 1.21169 0.91549 0.85348 0.98687 1.23474 1.01960 0.96829 0.81233 1.87939 1.27127 1.88864 1.25067 1.21945 0.84698 0.95676 0.94446 1.22009 0.94616 0.98983 1.02158 1.21500 0.97076 1.01152 0.95721 1.21562 0.99420 0.97933 0.96864 1.21496 0.95292 0.97839 1.00675 1.21548 0.96439 1.01924 0.95220 0.95060 0.94875 0.90723 0.95349 0.93502 0.91812 0.92275 0.92921 0.91915 0.92885 0.92904 0.95462 0.93354 0.91381 0.91317 0.92030 0.92307 0.91916 0.92368 0.91924 0.92163 0.91298 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.38 -7.63 9.62 -35.23 -0.34 -7.97 16 3 C 0.04 0.74 6.28 37.16 0.23 0.97 16 4 C 0.15 3.19 5.87 -4.05 -0.02 3.16 16 5 N -0.59 -14.08 2.05 -173.24 -0.35 -14.44 16 6 C -0.27 -7.56 9.79 -15.06 -0.15 -7.71 16 7 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 8 C 0.04 1.27 4.96 -17.43 -0.09 1.19 16 9 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 10 Si 0.83 21.54 26.28 -169.99 -4.47 17.07 16 11 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 13 H -0.25 -6.21 6.00 56.52 0.34 -5.87 16 14 C 0.16 3.62 4.28 -4.04 -0.02 3.60 16 15 C 0.04 0.88 6.06 37.16 0.23 1.10 16 16 O -0.37 -6.92 8.36 -35.23 -0.29 -7.22 16 17 C 0.09 1.37 2.60 -26.73 -0.07 1.30 16 18 C -0.14 -2.05 5.49 -26.73 -0.15 -2.20 16 19 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 20 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.34 16 22 C -0.11 -1.44 5.57 -26.73 -0.15 -1.59 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.30 6.65 -51.93 -0.35 0.96 16 29 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.06 1.53 4.53 -51.93 -0.24 1.29 16 32 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 33 H 0.05 1.15 7.61 -51.93 -0.39 0.76 16 34 H 0.03 0.49 8.14 -51.94 -0.42 0.07 16 35 H 0.05 0.72 7.86 -51.93 -0.41 0.31 16 36 H 0.07 1.13 7.64 -51.93 -0.40 0.74 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -30.40 348.21 -7.51 -37.91 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.53 Total: -1.99 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 0.46 Total: -2.77 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.42 Total: -40.28 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.63 Total: -15.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.47 Total: 17.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.40 -7.51 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701401003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.151 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.40 seconds