Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00023 * 2 1 4 4 H 1.48504 * 109.46810 * 269.99879 * 3 2 1 5 5 H 1.48489 * 109.46967 * 30.00060 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00339 * 3 2 1 7 7 C 1.38801 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00110 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99904 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99928 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47114 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.39543 * 119.99558 * 185.26016 * 13 11 10 15 15 C 1.39460 * 120.84990 * 212.52085 * 14 13 11 16 16 C 1.37895 * 119.10575 * 180.02562 * 15 14 13 17 17 N 1.32002 * 120.85393 * 0.02562 * 16 15 14 18 18 C 1.32040 * 121.87856 * 359.72604 * 17 16 15 19 19 Cl 1.73607 * 119.59912 * 180.29094 * 18 17 16 20 20 C 1.38145 * 120.80247 * 0.53471 * 18 17 16 21 21 H 0.97004 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47551 * 60.00238 * 10 9 7 23 23 H 1.09004 * 109.47257 * 299.99770 * 10 9 7 24 24 H 0.96993 * 119.99912 * 5.26200 * 13 11 10 25 25 H 1.08003 * 120.44731 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.56890 * 179.97438 * 16 15 14 27 27 H 1.07998 * 120.46488 * 179.75729 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2964 -0.0003 13 7 6.0456 -4.4948 -0.0001 14 6 7.4173 -4.7261 0.1108 15 6 8.0115 -5.8189 -0.5199 16 6 9.3700 -6.0136 -0.3858 17 7 10.1058 -5.1822 0.3284 18 6 9.5820 -4.1339 0.9366 19 17 10.6064 -3.0747 1.8546 20 6 8.2280 -3.8724 0.8555 21 1 -0.4850 0.8401 0.0004 22 1 3.6433 -3.4318 -0.8895 23 1 3.6440 -3.4314 0.8904 24 1 5.4324 -5.2422 -0.0774 25 1 7.4157 -6.5034 -1.1054 26 1 9.8379 -6.8576 -0.8707 27 1 7.8047 -3.0155 1.3584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702082454.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = -5.794440 kcal Electronic energy + Delta-G solvation = -15347.282307 eV Core-core repulsion = 12450.408151 eV Total energy + Delta-G solvation = -2896.874156 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.013 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99771 -39.27359 -36.79348 -35.36479 -32.53579 -31.68666 -31.27114 -29.15219 -25.73012 -24.14560 -23.48333 -20.94127 -18.67061 -17.90078 -17.12604 -16.31389 -16.17016 -15.45009 -15.25501 -15.03979 -14.55754 -14.23354 -13.93743 -13.75038 -12.88897 -12.68505 -12.34022 -11.92878 -11.44499 -11.37734 -11.11927 -11.07470 -10.76474 -10.29049 -9.93256 -9.68901 -9.21010 -9.09914 -8.90707 -8.65673 -7.05860 -6.38046 -4.12127 0.68233 0.86676 1.64099 2.44589 2.55671 3.01951 3.26361 3.42678 3.44449 3.46438 4.21893 4.24646 4.47312 4.62420 4.75224 4.77407 4.96875 5.00948 5.25983 5.45628 5.52043 5.74163 5.78498 5.94119 6.39925 7.06412 7.50381 7.84545 7.98220 8.31919 9.07421 10.70921 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.004067 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.018858 B = 6882.963492 C = 7608.283587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.090 0.910 9 S -0.136 6.136 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.488 6.488 13 N -0.674 5.674 14 C 0.216 3.784 15 C -0.204 4.204 16 C 0.136 3.864 17 N -0.497 5.497 18 C 0.194 3.806 19 Cl -0.028 7.028 20 C -0.163 4.163 21 H 0.272 0.728 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.418 0.582 25 H 0.146 0.854 26 H 0.168 0.832 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -13.136 0.470 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.672 4.672 8 H 0.108 0.892 9 S 0.090 5.910 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.359 6.359 13 N -0.321 5.321 14 C 0.112 3.888 15 C -0.227 4.227 16 C -0.021 4.021 17 N -0.211 5.211 18 C 0.031 3.969 19 Cl 0.001 6.999 20 C -0.186 4.186 21 H 0.082 0.918 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.255 0.745 25 H 0.164 0.836 26 H 0.185 0.815 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 17.287 -11.456 0.646 20.749 hybrid contribution -1.971 -0.469 -0.123 2.030 sum 15.316 -11.925 0.524 19.418 Atomic orbital electron populations 1.69928 1.05901 1.27913 1.47571 1.24710 0.94470 0.98994 0.93058 0.86748 0.81872 0.83301 0.80009 1.19136 1.19791 1.15923 1.22268 0.87920 0.97641 1.59368 0.89218 1.84867 1.09772 0.98851 1.97476 1.23300 0.92305 1.05482 1.06494 1.20677 0.91416 0.81498 0.74584 1.90752 1.58535 1.41770 1.44885 1.43648 1.04935 1.09914 1.73645 1.17881 0.84518 0.94119 0.92324 1.22007 0.96901 1.00632 1.03209 1.22437 0.89702 0.96460 0.93480 1.67032 1.40651 1.03693 1.09675 1.21393 0.88479 0.91831 0.95218 1.98412 1.68804 1.61963 1.70753 1.21876 0.92316 1.03196 1.01231 0.91805 0.87834 0.87667 0.74513 0.83649 0.81455 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.97 55.49 0.78 -24.93 15 2 C 0.10 2.74 5.50 -17.43 -0.10 2.65 15 3 Si 0.86 21.09 27.74 -169.99 -4.72 16.38 15 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.24 -5.76 6.74 56.52 0.38 -5.38 15 7 C -0.52 -14.43 10.04 30.94 0.31 -14.12 15 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 15 9 S -0.14 -3.23 18.55 -107.50 -1.99 -5.22 15 10 C -0.13 -2.15 6.16 36.01 0.22 -1.93 15 11 C 0.53 8.34 7.62 -10.98 -0.08 8.25 15 12 O -0.49 -9.47 13.56 5.56 0.08 -9.40 15 13 N -0.67 -7.55 5.35 -9.71 -0.05 -7.60 15 14 C 0.22 2.53 6.33 -83.50 -0.53 2.00 15 15 C -0.20 -1.79 10.06 -39.25 -0.39 -2.19 15 16 C 0.14 1.25 11.17 -17.60 -0.20 1.05 15 17 N -0.50 -6.13 10.34 -10.44 -0.11 -6.24 15 18 C 0.19 2.57 7.27 -17.50 -0.13 2.45 15 19 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 15 20 C -0.16 -2.21 8.50 -39.22 -0.33 -2.55 15 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 22 H 0.10 1.61 8.14 -51.92 -0.42 1.18 15 23 H 0.11 1.64 8.14 -51.91 -0.42 1.22 15 24 H 0.42 3.08 8.82 -40.82 -0.36 2.72 15 25 H 0.15 0.80 8.06 -52.48 -0.42 0.38 15 26 H 0.17 0.92 8.06 -52.49 -0.42 0.50 15 27 H 0.16 2.41 6.47 -52.49 -0.34 2.07 15 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -32.83 276.23 -6.56 -39.39 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -1.97 Total: -0.30 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.23 Total: -4.38 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.62 Total: -38.77 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.72 Total: 16.38 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.99 Total: -5.22 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.83 -6.56 -39.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702082454.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.595 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds