Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00023 * 2 1 4 4 H 1.48504 * 109.46810 * 269.99879 * 3 2 1 5 5 H 1.48489 * 109.46967 * 30.00060 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00339 * 3 2 1 7 7 C 1.38801 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00110 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99904 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99928 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47114 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.39543 * 119.99558 * 185.26016 * 13 11 10 15 15 C 1.39460 * 120.84990 * 212.52085 * 14 13 11 16 16 C 1.37895 * 119.10575 * 180.02562 * 15 14 13 17 17 N 1.32002 * 120.85393 * 0.02562 * 16 15 14 18 18 C 1.32040 * 121.87856 * 359.72604 * 17 16 15 19 19 Cl 1.73607 * 119.59912 * 180.29094 * 18 17 16 20 20 C 1.38145 * 120.80247 * 0.53471 * 18 17 16 21 21 H 0.97004 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47551 * 60.00238 * 10 9 7 23 23 H 1.09004 * 109.47257 * 299.99770 * 10 9 7 24 24 H 0.96993 * 119.99912 * 5.26200 * 13 11 10 25 25 H 1.08003 * 120.44731 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.56890 * 179.97438 * 16 15 14 27 27 H 1.07998 * 120.46488 * 179.75729 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2964 -0.0003 13 7 6.0456 -4.4948 -0.0001 14 6 7.4173 -4.7261 0.1108 15 6 8.0115 -5.8189 -0.5199 16 6 9.3700 -6.0136 -0.3858 17 7 10.1058 -5.1822 0.3284 18 6 9.5820 -4.1339 0.9366 19 17 10.6064 -3.0747 1.8546 20 6 8.2280 -3.8724 0.8555 21 1 -0.4850 0.8401 0.0004 22 1 3.6433 -3.4318 -0.8895 23 1 3.6440 -3.4314 0.8904 24 1 5.4324 -5.2422 -0.0774 25 1 7.4157 -6.5034 -1.1054 26 1 9.8379 -6.8576 -0.8707 27 1 7.8047 -3.0155 1.3584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702082454.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = -29.263503 kcal Electronic energy + Delta-G solvation = -15348.300002 eV Core-core repulsion = 12450.408151 eV Total energy + Delta-G solvation = -2897.891851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.013 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.98578 -40.35140 -37.73640 -36.44202 -34.67950 -32.77352 -32.10562 -30.38638 -27.86981 -25.05114 -24.40731 -22.07171 -20.09254 -19.29575 -18.39242 -17.36728 -17.14993 -17.06187 -16.51494 -16.36202 -15.74385 -15.49607 -15.11661 -14.89118 -14.84713 -13.91412 -13.36987 -13.29125 -13.04217 -12.86867 -12.71656 -12.39278 -12.10415 -11.88874 -11.43286 -11.18212 -10.68943 -10.56197 -10.08571 -9.85794 -9.01865 -8.52446 -6.23609 -0.17175 -0.03155 0.72443 0.92570 1.30659 1.36766 1.42905 1.50624 1.94224 2.23231 2.60143 2.65584 2.86199 3.39773 3.65125 3.82355 3.87596 4.08305 4.18377 4.38021 4.44939 4.62691 4.88364 5.09652 5.51984 5.69975 6.11633 6.13425 6.67682 6.86834 6.93049 8.59544 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.004067 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.018858 B = 6882.963492 C = 7608.283587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.527 4.527 8 H 0.067 0.933 9 S -0.175 6.175 10 C -0.110 4.110 11 C 0.538 3.462 12 O -0.531 6.531 13 N -0.649 5.649 14 C 0.199 3.801 15 C -0.179 4.179 16 C 0.138 3.862 17 N -0.514 5.514 18 C 0.179 3.821 19 Cl -0.036 7.036 20 C -0.181 4.181 21 H 0.277 0.723 22 H 0.126 0.874 23 H 0.124 0.876 24 H 0.439 0.561 25 H 0.190 0.810 26 H 0.211 0.789 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.360 -15.250 -0.438 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.160 1.160 7 C -0.674 4.674 8 H 0.085 0.915 9 S 0.052 5.948 10 C -0.261 4.261 11 C 0.325 3.675 12 O -0.405 6.405 13 N -0.298 5.298 14 C 0.095 3.905 15 C -0.201 4.201 16 C -0.018 4.018 17 N -0.228 5.228 18 C 0.016 3.984 19 Cl -0.008 7.008 20 C -0.205 4.205 21 H 0.086 0.914 22 H 0.144 0.856 23 H 0.142 0.858 24 H 0.280 0.720 25 H 0.207 0.793 26 H 0.227 0.773 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.343 -13.624 -0.257 22.850 hybrid contribution -2.236 -0.054 0.127 2.241 sum 16.107 -13.677 -0.130 21.131 Atomic orbital electron populations 1.70007 1.07247 1.28991 1.49053 1.25532 0.95239 1.02171 0.93012 0.85911 0.80725 0.79874 0.80144 1.18804 1.18573 1.16020 1.22434 0.90039 0.96770 1.58204 0.91472 1.84818 1.06718 1.05634 1.97638 1.23256 0.94037 1.00219 1.08570 1.20307 0.90288 0.82521 0.74350 1.90756 1.59104 1.43472 1.47210 1.43219 1.05428 1.08912 1.72238 1.18070 0.84188 0.95096 0.93152 1.22433 0.96996 0.99307 1.01366 1.23245 0.90007 0.96493 0.92102 1.67084 1.41577 1.03841 1.10253 1.21398 0.88324 0.92563 0.96163 1.98398 1.68915 1.62414 1.71058 1.21770 0.92940 1.03318 1.02502 0.91393 0.85604 0.85762 0.72002 0.79309 0.77253 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.27 13.97 21.65 0.30 -53.96 15 2 C 0.05 2.62 5.50 84.86 0.47 3.09 15 3 Si 0.91 43.78 27.74 68.60 1.90 45.68 15 4 H -0.26 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.26 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.24 -11.30 6.74 99.48 0.67 -10.63 15 7 C -0.53 -29.19 10.04 67.95 0.68 -28.51 15 8 H 0.07 3.89 8.03 -2.91 -0.02 3.87 15 9 S -0.17 -8.24 18.55 -56.49 -1.05 -9.29 15 10 C -0.11 -3.59 6.16 71.24 0.44 -3.15 15 11 C 0.54 16.03 7.62 87.66 0.67 16.70 15 12 O -0.53 -20.46 13.56 -3.03 -0.04 -20.51 15 13 N -0.65 -12.65 5.35 -303.02 -1.62 -14.27 15 14 C 0.20 4.14 6.33 38.47 0.24 4.38 15 15 C -0.18 -2.32 10.06 22.48 0.23 -2.09 15 16 C 0.14 1.97 11.17 84.59 0.94 2.91 15 17 N -0.51 -11.60 10.34 -186.95 -1.93 -13.53 15 18 C 0.18 4.62 7.27 84.64 0.62 5.23 15 19 Cl -0.04 -0.92 29.10 -2.72 -0.08 -1.00 15 20 C -0.18 -4.85 8.50 22.51 0.19 -4.66 15 21 H 0.28 15.23 8.31 -92.71 -0.77 14.46 15 22 H 0.13 3.58 8.14 -2.40 -0.02 3.56 15 23 H 0.12 3.61 8.14 -2.39 -0.02 3.59 15 24 H 0.44 4.65 8.82 -92.71 -0.82 3.83 15 25 H 0.19 0.81 8.06 -2.91 -0.02 0.79 15 26 H 0.21 1.13 8.06 -2.91 -0.02 1.10 15 27 H 0.13 4.23 6.47 -2.91 -0.02 4.21 15 Total: -1.00 -73.38 276.23 2.33 -71.05 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 0.37 Total: 1.92 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 4.48 Total: -6.09 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -3.25 Total: -81.76 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.05 Total: -9.29 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -73.38 2.33 -71.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702082454.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.788 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds