Wall clock time and date at job start Mon Mar 30 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47293 * 2 1 4 4 C 1.42898 * 114.00326 * 185.00437 * 3 2 1 5 5 C 1.53006 * 109.54048 * 66.05984 * 4 3 2 6 6 N 1.46905 * 109.46913 * 66.30186 * 5 4 3 7 7 C 1.46895 * 111.00254 * 93.19665 * 6 5 4 8 8 C 1.46897 * 110.99699 * 217.15535 * 6 5 4 9 9 H 1.08992 * 109.47245 * 299.99841 * 8 6 5 10 10 C 1.53007 * 109.47125 * 59.99753 * 8 6 5 11 11 C 1.50706 * 109.47019 * 179.97438 * 8 6 5 12 12 H 1.07992 * 119.99898 * 0.02562 * 11 8 6 13 13 C 1.37876 * 119.99665 * 179.97438 * 11 8 6 14 14 N 1.31504 * 120.00436 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99446 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47188 * 90.00322 * 15 13 11 17 17 H 1.48505 * 109.47071 * 210.00314 * 15 13 11 18 18 H 1.48500 * 109.47470 * 330.00250 * 15 13 11 19 19 C 1.53180 * 109.54787 * 186.23854 * 4 3 2 20 20 C 1.53099 * 109.15424 * 63.06562 * 19 4 3 21 21 O 1.42906 * 109.48964 * 57.47546 * 20 19 4 22 22 C 1.42898 * 114.09881 * 298.89119 * 21 20 19 23 23 C 1.53091 * 109.41976 * 61.15064 * 22 21 20 24 24 H 1.08996 * 109.46974 * 299.99922 * 1 2 3 25 25 H 1.09001 * 109.46748 * 59.99533 * 1 2 3 26 26 H 1.08997 * 109.47464 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46990 * 240.00234 * 2 1 3 28 28 H 1.08994 * 109.47364 * 120.00403 * 2 1 3 29 29 H 1.08996 * 109.47348 * 306.29810 * 5 4 3 30 30 H 1.09007 * 109.47018 * 186.29601 * 5 4 3 31 31 H 1.08997 * 109.47461 * 193.28342 * 7 6 5 32 32 H 1.08995 * 109.47334 * 313.29603 * 7 6 5 33 33 H 1.09007 * 109.46599 * 73.28952 * 7 6 5 34 34 H 1.09005 * 109.46868 * 179.97438 * 10 8 6 35 35 H 1.08998 * 109.47133 * 299.99689 * 10 8 6 36 36 H 1.08999 * 109.46952 * 60.00324 * 10 8 6 37 37 H 0.97007 * 120.00456 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.51865 * 182.88356 * 19 4 3 39 39 H 1.08991 * 109.51989 * 303.07341 * 19 4 3 40 40 H 1.09000 * 109.40845 * 297.49242 * 20 19 4 41 41 H 1.08998 * 109.49331 * 177.50831 * 20 19 4 42 42 H 1.09000 * 109.47795 * 301.17228 * 22 21 20 43 43 H 1.09003 * 109.49449 * 181.14829 * 22 21 20 44 44 H 1.08996 * 109.52640 * 182.48841 * 23 22 21 45 45 H 1.09004 * 109.57188 * 62.33006 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4262 1.4618 -0.1139 5 6 3.8716 0.9581 -1.4883 6 7 3.3526 1.8545 -2.5300 7 6 4.3347 2.8932 -2.8680 8 6 2.9541 1.0981 -3.7246 9 1 3.8175 0.5641 -4.1213 10 6 1.8611 0.0944 -3.3516 11 6 2.4275 2.0488 -4.7686 12 1 2.3927 3.1088 -4.5653 13 6 1.9910 1.5652 -5.9838 14 7 2.0338 0.2744 -6.2316 15 14 1.3389 2.7437 -7.2782 16 1 2.4579 3.1987 -8.1420 17 1 0.3213 2.0520 -8.1097 18 1 0.7192 3.9173 -6.6119 19 6 3.8371 2.9280 0.0525 20 6 3.4598 3.3989 1.4595 21 8 4.0923 2.5604 2.4286 22 6 3.7080 1.1862 2.3507 23 6 4.0971 0.6257 0.9803 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.4852 -0.0483 -1.6493 30 1 4.9606 0.9408 -1.5335 31 1 3.8511 3.6728 -3.4566 32 1 4.7359 3.3259 -1.9516 33 1 5.1460 2.4516 -3.4468 34 1 1.5650 -0.4665 -4.2381 35 1 2.2416 -0.5932 -2.5963 36 1 0.9976 0.6284 -2.9549 37 1 1.7263 -0.0659 -7.0865 38 1 4.9142 3.0222 -0.0853 39 1 3.3195 3.5375 -0.6881 40 1 2.3781 3.3440 1.5820 41 1 3.7896 4.4284 1.5992 42 1 2.6295 1.1023 2.4848 43 1 4.2164 0.6215 3.1322 44 1 3.7653 -0.4097 0.9026 45 1 5.1797 0.6712 0.8612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702656585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:17 Heat of formation + Delta-G solvation = -81.024303 kcal Electronic energy + Delta-G solvation = -23437.017838 eV Core-core repulsion = 20262.177724 eV Total energy + Delta-G solvation = -3174.840114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10591 -37.40149 -36.27364 -33.40837 -32.14450 -31.13090 -30.15007 -29.06944 -27.72255 -24.95521 -24.02933 -23.68440 -22.54297 -21.56873 -19.64205 -19.25492 -16.57560 -16.40488 -15.99537 -15.55673 -15.31350 -15.08884 -14.63475 -14.45381 -13.87727 -13.69330 -13.29931 -12.97037 -12.68525 -12.42770 -12.20233 -12.01316 -11.89557 -11.79986 -11.33311 -11.25037 -11.11173 -10.99708 -10.82391 -10.69278 -10.56378 -10.18148 -10.07944 -10.06617 -9.90135 -9.82343 -9.42340 -9.11037 -8.65121 -8.40419 -7.07769 -6.00061 -4.03828 3.30630 3.37357 3.41814 3.96912 4.05144 4.41582 4.74077 4.97157 5.00833 5.17524 5.25853 5.32228 5.37173 5.41951 5.54485 5.59054 5.64803 5.69271 5.72096 5.81528 5.90663 6.00469 6.02907 6.06668 6.14231 6.20486 6.30812 6.39248 6.43726 6.47739 6.54320 6.78403 6.84495 7.08699 7.15611 7.30862 7.53225 7.65561 7.81400 7.85224 8.23743 8.34790 8.62916 9.02954 9.61139 11.06795 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.005666 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.649117 B = 4940.352893 C = 5432.569571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.356 6.356 4 C 0.132 3.868 5 C 0.024 3.976 6 N -0.523 5.523 7 C 0.032 3.968 8 C 0.213 3.787 9 H -0.007 1.007 10 C -0.129 4.129 11 C -0.499 4.499 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.135 4.135 20 C 0.062 3.938 21 O -0.389 6.389 22 C 0.069 3.931 23 C -0.186 4.186 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.012 0.988 34 H 0.082 0.918 35 H 0.007 0.993 36 H 0.038 0.962 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 0.095 14.349 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.275 6.275 4 C 0.091 3.909 5 C -0.105 4.105 6 N -0.247 5.247 7 C -0.116 4.116 8 C 0.107 3.893 9 H 0.011 0.989 10 C -0.187 4.187 11 C -0.537 4.537 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.173 4.173 20 C -0.015 4.015 21 O -0.308 6.308 22 C -0.008 4.008 23 C -0.224 4.224 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.101 0.899 35 H 0.025 0.975 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.813 0.431 14.511 14.630 hybrid contribution 0.392 -0.342 -1.467 1.556 sum 2.205 0.089 13.044 13.229 Atomic orbital electron populations 1.21686 0.94264 1.01565 1.02897 1.22559 0.95222 0.85258 0.99829 1.87953 1.20154 1.25364 1.94059 1.21391 0.81507 0.95157 0.92801 1.22712 0.96945 0.97985 0.92849 1.62012 1.37701 1.13721 1.11257 1.22442 0.93934 0.96420 0.98843 1.19273 0.93161 0.91597 0.85247 0.98921 1.21937 0.99165 0.97935 0.99658 1.21144 1.41198 0.93712 0.97675 0.91942 1.24922 0.95934 0.95119 0.98310 1.69888 1.48112 1.11947 1.23526 0.86543 0.78628 0.81053 0.81453 1.20879 1.21319 1.19847 1.22248 1.01294 0.95687 0.98022 1.22608 0.97479 0.93672 0.87717 1.87855 1.68829 1.18406 1.55720 1.22411 0.99620 0.82614 0.96135 1.22835 1.02098 1.00684 0.96775 0.92713 0.91302 0.91844 0.92126 0.94643 0.90756 0.94832 0.91208 0.93234 0.96960 0.89928 0.97469 0.94326 0.93080 0.90735 0.88201 0.92428 0.89390 0.92857 0.89553 0.90698 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 37.16 0.38 -1.63 16 2 C 0.05 0.71 5.76 37.16 0.21 0.92 16 3 O -0.36 -5.97 8.92 -35.23 -0.31 -6.28 16 4 C 0.13 2.04 0.49 -90.43 -0.04 2.00 16 5 C 0.02 0.44 4.02 -3.82 -0.02 0.42 16 6 N -0.52 -11.03 4.02 -236.28 -0.95 -11.98 16 7 C 0.03 0.62 8.10 60.06 0.49 1.11 16 8 C 0.21 5.33 1.99 -68.86 -0.14 5.20 16 9 H -0.01 -0.19 8.14 -51.93 -0.42 -0.61 16 10 C -0.13 -3.10 8.43 37.16 0.31 -2.78 16 11 C -0.50 -13.60 8.01 -34.44 -0.28 -13.88 16 12 H 0.06 1.71 6.44 -52.49 -0.34 1.37 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 14 N -0.90 -25.47 11.32 55.43 0.63 -24.85 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.14 -1.98 3.56 -26.59 -0.09 -2.08 16 20 C 0.06 0.82 6.69 37.21 0.25 1.07 16 21 O -0.39 -5.44 10.77 -35.23 -0.38 -5.82 16 22 C 0.07 0.85 6.69 37.20 0.25 1.10 16 23 C -0.19 -2.40 4.47 -26.59 -0.12 -2.52 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.00 4.06 -51.93 -0.21 0.79 16 28 H 0.04 0.46 6.52 -51.93 -0.34 0.12 16 29 H 0.07 1.40 4.17 -51.93 -0.22 1.18 16 30 H 0.03 0.58 7.74 -51.93 -0.40 0.18 16 31 H 0.07 1.43 6.61 -51.93 -0.34 1.09 16 32 H 0.05 0.81 4.96 -51.93 -0.26 0.55 16 33 H 0.01 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 35 H 0.01 0.14 4.30 -51.93 -0.22 -0.08 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.07 1.04 7.31 -51.93 -0.38 0.66 16 39 H 0.10 1.63 6.53 -51.93 -0.34 1.29 16 40 H 0.06 0.80 7.82 -51.93 -0.41 0.40 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.67 7.77 -51.93 -0.40 0.26 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -29.05 327.96 -7.43 -36.48 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.44 Total: 0.70 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 1.11 Total: -9.57 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.32 Total: -36.83 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.69 Total: -12.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.05 -7.43 -36.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702656585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.548 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds