Wall clock time and date at job start Mon Mar 30 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47293 * 2 1 4 4 C 1.42898 * 114.00326 * 185.00437 * 3 2 1 5 5 C 1.53006 * 109.54048 * 66.05984 * 4 3 2 6 6 N 1.46905 * 109.46913 * 66.30186 * 5 4 3 7 7 C 1.46895 * 111.00254 * 93.19665 * 6 5 4 8 8 C 1.46897 * 110.99699 * 217.15535 * 6 5 4 9 9 H 1.08992 * 109.47245 * 299.99841 * 8 6 5 10 10 C 1.53007 * 109.47125 * 59.99753 * 8 6 5 11 11 C 1.50706 * 109.47019 * 179.97438 * 8 6 5 12 12 H 1.07992 * 119.99898 * 0.02562 * 11 8 6 13 13 C 1.37876 * 119.99665 * 179.97438 * 11 8 6 14 14 N 1.31504 * 120.00436 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99446 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47188 * 90.00322 * 15 13 11 17 17 H 1.48505 * 109.47071 * 210.00314 * 15 13 11 18 18 H 1.48500 * 109.47470 * 330.00250 * 15 13 11 19 19 C 1.53180 * 109.54787 * 186.23854 * 4 3 2 20 20 C 1.53099 * 109.15424 * 63.06562 * 19 4 3 21 21 O 1.42906 * 109.48964 * 57.47546 * 20 19 4 22 22 C 1.42898 * 114.09881 * 298.89119 * 21 20 19 23 23 C 1.53091 * 109.41976 * 61.15064 * 22 21 20 24 24 H 1.08996 * 109.46974 * 299.99922 * 1 2 3 25 25 H 1.09001 * 109.46748 * 59.99533 * 1 2 3 26 26 H 1.08997 * 109.47464 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46990 * 240.00234 * 2 1 3 28 28 H 1.08994 * 109.47364 * 120.00403 * 2 1 3 29 29 H 1.08996 * 109.47348 * 306.29810 * 5 4 3 30 30 H 1.09007 * 109.47018 * 186.29601 * 5 4 3 31 31 H 1.08997 * 109.47461 * 193.28342 * 7 6 5 32 32 H 1.08995 * 109.47334 * 313.29603 * 7 6 5 33 33 H 1.09007 * 109.46599 * 73.28952 * 7 6 5 34 34 H 1.09005 * 109.46868 * 179.97438 * 10 8 6 35 35 H 1.08998 * 109.47133 * 299.99689 * 10 8 6 36 36 H 1.08999 * 109.46952 * 60.00324 * 10 8 6 37 37 H 0.97007 * 120.00456 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.51865 * 182.88356 * 19 4 3 39 39 H 1.08991 * 109.51989 * 303.07341 * 19 4 3 40 40 H 1.09000 * 109.40845 * 297.49242 * 20 19 4 41 41 H 1.08998 * 109.49331 * 177.50831 * 20 19 4 42 42 H 1.09000 * 109.47795 * 301.17228 * 22 21 20 43 43 H 1.09003 * 109.49449 * 181.14829 * 22 21 20 44 44 H 1.08996 * 109.52640 * 182.48841 * 23 22 21 45 45 H 1.09004 * 109.57188 * 62.33006 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4262 1.4618 -0.1139 5 6 3.8716 0.9581 -1.4883 6 7 3.3526 1.8545 -2.5300 7 6 4.3347 2.8932 -2.8680 8 6 2.9541 1.0981 -3.7246 9 1 3.8175 0.5641 -4.1213 10 6 1.8611 0.0944 -3.3516 11 6 2.4275 2.0488 -4.7686 12 1 2.3927 3.1088 -4.5653 13 6 1.9910 1.5652 -5.9838 14 7 2.0338 0.2744 -6.2316 15 14 1.3389 2.7437 -7.2782 16 1 2.4579 3.1987 -8.1420 17 1 0.3213 2.0520 -8.1097 18 1 0.7192 3.9173 -6.6119 19 6 3.8371 2.9280 0.0525 20 6 3.4598 3.3989 1.4595 21 8 4.0923 2.5604 2.4286 22 6 3.7080 1.1862 2.3507 23 6 4.0971 0.6257 0.9803 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.4852 -0.0483 -1.6493 30 1 4.9606 0.9408 -1.5335 31 1 3.8511 3.6728 -3.4566 32 1 4.7359 3.3259 -1.9516 33 1 5.1460 2.4516 -3.4468 34 1 1.5650 -0.4665 -4.2381 35 1 2.2416 -0.5932 -2.5963 36 1 0.9976 0.6284 -2.9549 37 1 1.7263 -0.0659 -7.0865 38 1 4.9142 3.0222 -0.0853 39 1 3.3195 3.5375 -0.6881 40 1 2.3781 3.3440 1.5820 41 1 3.7896 4.4284 1.5992 42 1 2.6295 1.1023 2.4848 43 1 4.2164 0.6215 3.1322 44 1 3.7653 -0.4097 0.9026 45 1 5.1797 0.6712 0.8612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702656585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:16 Heat of formation + Delta-G solvation = -100.042448 kcal Electronic energy + Delta-G solvation = -23437.842527 eV Core-core repulsion = 20262.177724 eV Total energy + Delta-G solvation = -3175.664803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30660 -38.74103 -37.75038 -35.10127 -33.71773 -32.20033 -31.32117 -30.92063 -29.22384 -26.88581 -25.52524 -24.83981 -23.82769 -22.88423 -21.18735 -20.70143 -18.40031 -17.73251 -17.28369 -16.89461 -16.70780 -16.41732 -16.03367 -15.68858 -15.40720 -15.26280 -14.96560 -14.25778 -14.10601 -13.83147 -13.72432 -13.36394 -13.19316 -12.97201 -12.91460 -12.73392 -12.60691 -12.46104 -12.31575 -12.23652 -12.18706 -12.02925 -11.82972 -11.68853 -11.23591 -11.13470 -10.96855 -10.55884 -10.46616 -10.07129 -8.81054 -8.11375 -6.22396 1.40049 1.41482 1.52010 2.41411 2.83518 3.01028 3.16840 3.37341 3.78084 3.88735 3.98219 4.09625 4.21212 4.31963 4.37733 4.41965 4.47772 4.51724 4.58519 4.66775 4.70727 4.76834 4.80555 4.84776 4.90090 4.94135 4.97392 5.04901 5.10524 5.12426 5.17983 5.21352 5.26811 5.33052 5.37375 5.51738 5.74014 5.80091 6.27153 6.29923 6.40798 6.54497 6.78156 6.93173 7.46718 8.94465 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.005666 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.649117 B = 4940.352893 C = 5432.569571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.374 6.374 4 C 0.132 3.868 5 C 0.024 3.976 6 N -0.527 5.527 7 C 0.036 3.964 8 C 0.218 3.782 9 H -0.044 1.044 10 C -0.110 4.110 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.957 3.043 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C -0.134 4.134 20 C 0.067 3.933 21 O -0.398 6.398 22 C 0.068 3.932 23 C -0.180 4.180 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.000 1.000 34 H 0.054 0.946 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 0.481 16.044 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.293 6.293 4 C 0.092 3.908 5 C -0.104 4.104 6 N -0.251 5.251 7 C -0.112 4.112 8 C 0.111 3.889 9 H -0.027 1.027 10 C -0.168 4.168 11 C -0.553 4.553 12 H 0.075 0.925 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.783 3.217 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.172 4.172 20 C -0.009 4.009 21 O -0.317 6.317 22 C -0.008 4.008 23 C -0.218 4.218 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.060 0.820 16.223 16.374 hybrid contribution 0.348 -0.491 -1.955 2.046 sum 2.408 0.329 14.268 14.474 Atomic orbital electron populations 1.21686 0.93584 1.02714 1.02107 1.22652 0.95845 0.84591 1.00023 1.87943 1.20851 1.26490 1.94056 1.21409 0.81333 0.96160 0.91896 1.22814 0.97272 0.96983 0.93372 1.61961 1.38973 1.14046 1.10106 1.22440 0.93036 0.95553 1.00153 1.19071 0.91904 0.91450 0.86483 1.02704 1.21673 0.98484 0.97700 0.98920 1.21415 1.41379 0.93818 0.98724 0.92511 1.25683 0.96173 0.96621 1.00268 1.70015 1.48693 1.13412 1.23994 0.85565 0.78106 0.79083 0.78922 1.20245 1.20894 1.19455 1.22220 1.01492 0.94871 0.98602 1.22577 0.97045 0.94618 0.86667 1.87855 1.68946 1.19187 1.55674 1.22549 0.99914 0.82089 0.96263 1.22792 1.02185 1.00695 0.96112 0.91500 0.93990 0.89788 0.94148 0.91994 0.91808 0.94099 0.92711 0.89817 0.98106 0.92682 0.95112 0.95189 0.93032 0.89896 0.90079 0.93237 0.87495 0.93036 0.87010 0.89707 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 10.28 71.98 0.74 -3.03 16 2 C 0.05 1.28 5.76 71.98 0.41 1.69 16 3 O -0.37 -12.08 8.92 -148.98 -1.33 -13.41 16 4 C 0.13 3.89 0.49 -10.67 -0.01 3.88 16 5 C 0.02 0.86 4.02 86.30 0.35 1.21 16 6 N -0.53 -22.43 4.02 -901.45 -3.62 -26.06 16 7 C 0.04 1.41 8.10 127.69 1.03 2.45 16 8 C 0.22 11.21 1.99 44.17 0.09 11.30 16 9 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 10 C -0.11 -5.40 8.43 71.98 0.61 -4.80 16 11 C -0.51 -28.72 8.01 25.60 0.21 -28.51 16 12 H 0.06 3.17 6.44 -2.91 -0.02 3.15 16 13 C 0.01 0.61 5.30 84.66 0.45 1.06 16 14 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 15 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 C -0.13 -3.70 3.56 30.69 0.11 -3.59 16 20 C 0.07 1.64 6.69 72.02 0.48 2.13 16 21 O -0.40 -9.92 10.77 -148.98 -1.60 -11.53 16 22 C 0.07 1.46 6.69 72.01 0.48 1.94 16 23 C -0.18 -4.15 4.47 30.69 0.14 -4.02 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.30 4.06 -2.38 -0.01 1.29 16 28 H 0.06 1.42 6.52 -2.39 -0.02 1.41 16 29 H 0.06 2.38 4.17 -2.39 -0.01 2.37 16 30 H 0.04 1.38 7.74 -2.38 -0.02 1.36 16 31 H 0.05 2.27 6.61 -2.39 -0.02 2.25 16 32 H 0.08 2.64 4.96 -2.39 -0.01 2.63 16 33 H 0.00 0.01 8.09 -2.38 -0.02 0.00 16 34 H 0.05 3.01 6.07 -2.38 -0.01 2.99 16 35 H 0.03 1.33 4.30 -2.39 -0.01 1.32 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 38 H 0.08 2.12 7.31 -2.39 -0.02 2.10 16 39 H 0.08 2.55 6.53 -2.39 -0.02 2.54 16 40 H 0.05 1.29 7.82 -2.39 -0.02 1.27 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.13 7.77 -2.39 -0.02 1.11 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.80 6.43 -2.39 -0.02 1.78 16 45 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -62.94 327.96 1.77 -61.17 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.97 Total: 15.07 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 5.09 Total: -18.30 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -3.38 Total: -79.33 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -2.93 Total: -24.94 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.94 1.77 -61.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702656585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.873 kcal (2) G-P(sol) polarization free energy of solvation -62.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds