Wall clock time and date at job start Mon Mar 30 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47212 * 2 1 4 4 C 1.42903 * 113.99806 * 185.43319 * 3 2 1 5 5 C 1.52992 * 109.54545 * 65.08989 * 4 3 2 6 6 N 1.46508 * 109.47225 * 59.35208 * 5 4 3 7 7 C 1.36935 * 119.99565 * 273.97171 * 6 5 4 8 8 H 1.07996 * 119.99954 * 132.36888 * 7 6 5 9 9 C 1.38821 * 120.00232 * 312.36723 * 7 6 5 10 10 N 1.31612 * 119.99679 * 3.13113 * 9 7 6 11 11 Si 1.86797 * 119.99933 * 183.13326 * 9 7 6 12 12 H 1.48504 * 109.47195 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47178 * 119.99937 * 11 9 7 14 14 H 1.48504 * 109.46899 * 240.00066 * 11 9 7 15 15 C 1.46490 * 119.99929 * 93.97240 * 6 5 4 16 16 C 1.53000 * 109.46931 * 186.70544 * 15 6 5 17 17 C 1.52997 * 109.47620 * 66.70792 * 15 6 5 18 18 C 1.53178 * 109.61372 * 185.31267 * 4 3 2 19 19 C 1.53096 * 109.16355 * 62.92857 * 18 4 3 20 20 O 1.42896 * 109.41574 * 57.60847 * 19 18 4 21 21 C 1.42905 * 114.09698 * 298.84254 * 20 19 18 22 22 C 1.53093 * 109.41502 * 61.15698 * 21 20 19 23 23 H 1.09004 * 109.47129 * 300.00257 * 1 2 3 24 24 H 1.09005 * 109.47045 * 60.00025 * 1 2 3 25 25 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47027 * 239.99264 * 2 1 3 27 27 H 1.09003 * 109.46864 * 119.99459 * 2 1 3 28 28 H 1.09008 * 109.47462 * 299.35213 * 5 4 3 29 29 H 1.09000 * 109.47454 * 179.34597 * 5 4 3 30 30 H 0.97009 * 119.99774 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.47251 * 306.70335 * 15 6 5 32 32 H 1.09000 * 109.47169 * 64.55621 * 16 15 6 33 33 H 1.09000 * 109.47360 * 184.55412 * 16 15 6 34 34 H 1.09002 * 109.47196 * 304.55278 * 16 15 6 35 35 H 1.09001 * 109.47352 * 64.59361 * 17 15 6 36 36 H 1.08993 * 109.47650 * 184.59767 * 17 15 6 37 37 H 1.08999 * 109.47004 * 304.59811 * 17 15 6 38 38 H 1.09003 * 109.52403 * 182.83421 * 18 4 3 39 39 H 1.09001 * 109.52451 * 303.02508 * 18 4 3 40 40 H 1.09007 * 109.47963 * 297.62389 * 19 18 4 41 41 H 1.08996 * 109.49010 * 177.59977 * 19 18 4 42 42 H 1.08995 * 109.48037 * 301.17450 * 21 20 19 43 43 H 1.09004 * 109.48849 * 181.14634 * 21 20 19 44 44 H 1.09004 * 109.52221 * 182.48414 * 22 21 20 45 45 H 1.09000 * 109.57556 * 62.33056 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4254 1.4620 -0.1236 5 6 3.8638 0.9394 -1.4930 6 7 3.2055 1.7167 -2.5461 7 6 1.9559 1.3620 -2.9792 8 1 1.1857 2.1125 -3.0788 9 6 1.6789 0.0378 -3.2903 10 7 2.5985 -0.8865 -3.1105 11 14 0.0013 -0.4322 -3.9642 12 1 -0.8469 0.7821 -4.0715 13 1 0.1614 -1.0450 -5.3073 14 1 -0.6443 -1.4072 -3.0489 15 6 3.8843 2.8734 -3.1355 16 6 2.9252 3.6006 -4.0801 17 6 5.1106 2.4006 -3.9187 18 6 3.8370 2.9304 0.0202 19 6 3.4650 3.4217 1.4217 20 8 4.1041 2.5981 2.3990 21 6 3.7212 1.2224 2.3431 22 6 4.1036 0.6428 0.9787 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.5847 -0.1101 -1.5878 29 1 4.9449 1.0382 -1.5906 30 1 2.4051 -1.8119 -3.3282 31 1 4.1988 3.5528 -2.3433 32 1 2.0911 4.0076 -3.5085 33 1 3.4535 4.4125 -4.5800 34 1 2.5478 2.8999 -4.8249 35 1 4.7898 1.7869 -4.7605 36 1 5.6611 3.2655 -4.2887 37 1 5.7547 1.8125 -3.2650 38 1 4.9135 3.0229 -0.1243 39 1 3.3156 3.5297 -0.7261 40 1 2.3840 3.3670 1.5510 41 1 3.7939 4.4535 1.5446 42 1 2.6437 1.1389 2.4844 43 1 4.2350 0.6697 3.1297 44 1 3.7729 -0.3941 0.9177 45 1 5.1854 0.6880 0.8528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702657979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:20 Heat of formation + Delta-G solvation = -76.133690 kcal Electronic energy + Delta-G solvation = -24200.255916 eV Core-core repulsion = 21025.627875 eV Total energy + Delta-G solvation = -3174.628041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.55062 -36.95691 -35.80702 -32.57309 -32.27349 -30.69947 -29.64096 -29.38182 -27.06617 -25.59094 -23.80343 -23.36279 -21.89655 -21.45100 -19.25674 -18.99984 -16.37960 -16.10667 -15.56725 -15.20915 -14.76073 -14.60506 -14.54875 -14.09890 -13.86368 -13.54474 -12.91621 -12.74639 -12.46559 -12.08530 -11.85379 -11.67024 -11.46780 -11.29161 -11.11573 -11.05073 -10.89352 -10.82340 -10.71963 -10.59728 -10.38313 -10.25580 -10.12361 -10.07492 -9.79364 -9.56268 -9.28420 -9.03977 -8.49748 -8.16554 -6.32545 -5.65013 -3.41175 3.32919 3.42909 3.44878 4.26807 4.47057 4.65535 5.24755 5.38619 5.43032 5.47643 5.58884 5.63759 5.76428 5.88158 5.89305 5.99878 6.00927 6.11168 6.13621 6.16809 6.24465 6.32819 6.37334 6.42118 6.44902 6.51803 6.59884 6.66344 6.74376 6.79424 6.80540 6.85580 6.91794 7.02559 7.10236 7.24381 7.32987 7.59153 7.75815 7.98402 8.36794 8.69879 9.31377 9.86183 10.50874 11.26525 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.009640 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.539368 B = 2903.782320 C = 3873.228788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.358 6.358 4 C 0.102 3.898 5 C 0.118 3.882 6 N -0.572 5.572 7 C -0.217 4.217 8 H 0.056 0.944 9 C 0.018 3.982 10 N -0.900 5.900 11 Si 0.880 3.120 12 H -0.276 1.276 13 H -0.291 1.291 14 H -0.288 1.288 15 C 0.162 3.838 16 C -0.134 4.134 17 C -0.159 4.159 18 C -0.130 4.130 19 C 0.063 3.937 20 O -0.392 6.392 21 C 0.069 3.931 22 C -0.182 4.182 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.018 0.982 28 H 0.116 0.884 29 H 0.025 0.975 30 H 0.252 0.748 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 3.723 6.183 7.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 O -0.278 6.278 4 C 0.060 3.940 5 C -0.009 4.009 6 N -0.293 5.293 7 C -0.348 4.348 8 H 0.073 0.927 9 C -0.179 4.179 10 N -0.545 5.545 11 Si 0.709 3.291 12 H -0.201 1.201 13 H -0.218 1.218 14 H -0.215 1.215 15 C 0.055 3.945 16 C -0.191 4.191 17 C -0.218 4.218 18 C -0.168 4.168 19 C -0.013 4.013 20 O -0.312 6.312 21 C -0.008 4.008 22 C -0.220 4.220 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.037 0.963 28 H 0.133 0.867 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.820 3.799 6.264 7.548 hybrid contribution -0.878 -0.818 -0.602 1.342 sum 0.942 2.981 5.662 6.468 Atomic orbital electron populations 1.21636 0.95777 1.00635 1.01811 1.22536 0.93929 0.85483 1.00843 1.87808 1.20259 1.25606 1.94094 1.22191 0.81864 0.93896 0.96035 1.21726 0.93479 1.01051 0.84607 1.43593 1.16187 1.30881 1.38654 1.18882 0.87610 0.92149 1.36158 0.92668 1.25412 0.96571 0.97257 0.98652 1.69621 1.32922 1.00702 1.51302 0.86582 0.85054 0.78421 0.78997 1.20130 1.21839 1.21473 1.20546 0.91385 0.89679 0.92847 1.21788 0.98888 0.98689 0.99751 1.22312 0.99115 0.99505 1.00902 1.22124 1.00796 0.96745 0.97135 1.22559 0.97120 0.93449 0.88205 1.87810 1.68616 1.19041 1.55693 1.22421 0.99371 0.82229 0.96780 1.22781 1.01667 1.01054 0.96545 0.93683 0.91806 0.92728 0.88750 0.96345 0.86706 0.95677 0.93743 0.95278 0.93432 0.94817 0.91747 0.92926 0.94974 0.93848 0.91421 0.89512 0.92796 0.90076 0.93145 0.90080 0.90830 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.28 37.16 0.38 -2.26 16 2 C 0.05 0.99 5.35 37.16 0.20 1.18 16 3 O -0.36 -7.51 8.07 -35.23 -0.28 -7.80 16 4 C 0.10 1.98 0.48 -90.44 -0.04 1.94 16 5 C 0.12 2.60 4.04 -4.04 -0.02 2.58 16 6 N -0.57 -13.08 2.15 -165.67 -0.36 -13.44 16 7 C -0.22 -5.43 6.52 -15.06 -0.10 -5.53 16 8 H 0.06 1.45 6.90 -52.49 -0.36 1.09 16 9 C 0.02 0.47 4.07 -17.43 -0.07 0.40 16 10 N -0.90 -23.72 10.06 55.49 0.56 -23.16 16 11 Si 0.88 20.70 29.25 -169.99 -4.97 15.73 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.16 3.27 3.08 -67.94 -0.21 3.06 16 16 C -0.13 -2.55 8.09 37.16 0.30 -2.25 16 17 C -0.16 -3.06 9.33 37.16 0.35 -2.71 16 18 C -0.13 -2.32 4.05 -26.59 -0.11 -2.43 16 19 C 0.06 1.03 6.70 37.21 0.25 1.28 16 20 O -0.39 -6.67 10.77 -35.23 -0.38 -7.05 16 21 C 0.07 1.09 6.70 37.21 0.25 1.34 16 22 C -0.18 -3.12 4.49 -26.59 -0.12 -3.24 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.31 7.84 -51.93 -0.41 0.90 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 2.18 3.89 -51.93 -0.20 1.98 16 27 H 0.02 0.34 6.60 -51.93 -0.34 0.00 16 28 H 0.12 2.86 3.98 -51.92 -0.21 2.65 16 29 H 0.02 0.55 6.75 -51.93 -0.35 0.20 16 30 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.03 0.57 5.84 -51.93 -0.30 0.27 16 32 H 0.05 0.91 7.66 -51.93 -0.40 0.52 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.34 7.42 -51.93 -0.39 0.96 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.04 0.85 6.85 -51.93 -0.36 0.49 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.66 6.14 -51.93 -0.32 1.34 16 40 H 0.05 0.92 7.82 -51.92 -0.41 0.51 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.27 6.45 -51.93 -0.33 0.93 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -26.25 328.35 -7.15 -33.39 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.72 Total: 4.03 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 1.06 Total: -6.65 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.20 Total: -36.60 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.66 Total: -14.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.97 Total: 15.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.25 -7.15 -33.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702657979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.743 kcal (2) G-P(sol) polarization free energy of solvation -26.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds