Wall clock time and date at job start Mon Mar 30 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47212 * 2 1 4 4 C 1.42903 * 113.99806 * 185.43319 * 3 2 1 5 5 C 1.52992 * 109.54545 * 65.08989 * 4 3 2 6 6 N 1.46508 * 109.47225 * 59.35208 * 5 4 3 7 7 C 1.36935 * 119.99565 * 273.97171 * 6 5 4 8 8 H 1.07996 * 119.99954 * 132.36888 * 7 6 5 9 9 C 1.38821 * 120.00232 * 312.36723 * 7 6 5 10 10 N 1.31612 * 119.99679 * 3.13113 * 9 7 6 11 11 Si 1.86797 * 119.99933 * 183.13326 * 9 7 6 12 12 H 1.48504 * 109.47195 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47178 * 119.99937 * 11 9 7 14 14 H 1.48504 * 109.46899 * 240.00066 * 11 9 7 15 15 C 1.46490 * 119.99929 * 93.97240 * 6 5 4 16 16 C 1.53000 * 109.46931 * 186.70544 * 15 6 5 17 17 C 1.52997 * 109.47620 * 66.70792 * 15 6 5 18 18 C 1.53178 * 109.61372 * 185.31267 * 4 3 2 19 19 C 1.53096 * 109.16355 * 62.92857 * 18 4 3 20 20 O 1.42896 * 109.41574 * 57.60847 * 19 18 4 21 21 C 1.42905 * 114.09698 * 298.84254 * 20 19 18 22 22 C 1.53093 * 109.41502 * 61.15698 * 21 20 19 23 23 H 1.09004 * 109.47129 * 300.00257 * 1 2 3 24 24 H 1.09005 * 109.47045 * 60.00025 * 1 2 3 25 25 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47027 * 239.99264 * 2 1 3 27 27 H 1.09003 * 109.46864 * 119.99459 * 2 1 3 28 28 H 1.09008 * 109.47462 * 299.35213 * 5 4 3 29 29 H 1.09000 * 109.47454 * 179.34597 * 5 4 3 30 30 H 0.97009 * 119.99774 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.47251 * 306.70335 * 15 6 5 32 32 H 1.09000 * 109.47169 * 64.55621 * 16 15 6 33 33 H 1.09000 * 109.47360 * 184.55412 * 16 15 6 34 34 H 1.09002 * 109.47196 * 304.55278 * 16 15 6 35 35 H 1.09001 * 109.47352 * 64.59361 * 17 15 6 36 36 H 1.08993 * 109.47650 * 184.59767 * 17 15 6 37 37 H 1.08999 * 109.47004 * 304.59811 * 17 15 6 38 38 H 1.09003 * 109.52403 * 182.83421 * 18 4 3 39 39 H 1.09001 * 109.52451 * 303.02508 * 18 4 3 40 40 H 1.09007 * 109.47963 * 297.62389 * 19 18 4 41 41 H 1.08996 * 109.49010 * 177.59977 * 19 18 4 42 42 H 1.08995 * 109.48037 * 301.17450 * 21 20 19 43 43 H 1.09004 * 109.48849 * 181.14634 * 21 20 19 44 44 H 1.09004 * 109.52221 * 182.48414 * 22 21 20 45 45 H 1.09000 * 109.57556 * 62.33056 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4254 1.4620 -0.1236 5 6 3.8638 0.9394 -1.4930 6 7 3.2055 1.7167 -2.5461 7 6 1.9559 1.3620 -2.9792 8 1 1.1857 2.1125 -3.0788 9 6 1.6789 0.0378 -3.2903 10 7 2.5985 -0.8865 -3.1105 11 14 0.0013 -0.4322 -3.9642 12 1 -0.8469 0.7821 -4.0715 13 1 0.1614 -1.0450 -5.3073 14 1 -0.6443 -1.4072 -3.0489 15 6 3.8843 2.8734 -3.1355 16 6 2.9252 3.6006 -4.0801 17 6 5.1106 2.4006 -3.9187 18 6 3.8370 2.9304 0.0202 19 6 3.4650 3.4217 1.4217 20 8 4.1041 2.5981 2.3990 21 6 3.7212 1.2224 2.3431 22 6 4.1036 0.6428 0.9787 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.5847 -0.1101 -1.5878 29 1 4.9449 1.0382 -1.5906 30 1 2.4051 -1.8119 -3.3282 31 1 4.1988 3.5528 -2.3433 32 1 2.0911 4.0076 -3.5085 33 1 3.4535 4.4125 -4.5800 34 1 2.5478 2.8999 -4.8249 35 1 4.7898 1.7869 -4.7605 36 1 5.6611 3.2655 -4.2887 37 1 5.7547 1.8125 -3.2650 38 1 4.9135 3.0229 -0.1243 39 1 3.3156 3.5297 -0.7261 40 1 2.3840 3.3670 1.5510 41 1 3.7939 4.4535 1.5446 42 1 2.6437 1.1389 2.4844 43 1 4.2350 0.6697 3.1297 44 1 3.7729 -0.3941 0.9177 45 1 5.1854 0.6880 0.8528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702657979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:19 Heat of formation + Delta-G solvation = -90.388157 kcal Electronic energy + Delta-G solvation = -24200.874036 eV Core-core repulsion = 21025.627875 eV Total energy + Delta-G solvation = -3175.246161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01861 -38.47352 -37.43589 -34.24122 -33.97276 -32.04064 -31.21160 -31.07115 -28.74286 -27.17624 -25.52698 -24.79924 -23.42191 -22.94714 -20.99279 -20.49625 -18.17749 -17.60474 -16.95008 -16.83900 -16.31409 -16.28278 -16.04418 -15.74812 -15.32794 -15.23011 -14.64729 -14.26831 -13.93827 -13.60618 -13.28644 -13.16555 -13.05690 -12.89703 -12.79160 -12.75470 -12.59809 -12.37375 -12.23761 -12.21726 -12.04515 -11.98970 -11.82248 -11.72516 -11.27810 -11.17945 -10.84968 -10.48749 -10.31012 -9.85997 -8.20904 -7.55949 -5.36324 1.41442 1.48642 1.53210 2.55817 3.00259 3.12354 3.43754 3.71902 4.01746 4.08871 4.18429 4.21970 4.35481 4.39083 4.41481 4.55328 4.58820 4.59796 4.70579 4.76548 4.78706 4.82613 4.91223 4.93133 4.97029 5.02802 5.15170 5.15630 5.17898 5.19921 5.23885 5.30033 5.37238 5.43611 5.49533 5.64332 5.70119 5.83047 6.09827 6.30334 6.72768 6.80068 7.40773 8.02847 8.60779 9.29289 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.009640 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.539368 B = 2903.782320 C = 3873.228788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 O -0.371 6.371 4 C 0.102 3.898 5 C 0.121 3.879 6 N -0.583 5.583 7 C -0.208 4.208 8 H 0.041 0.959 9 C -0.011 4.011 10 N -0.917 5.917 11 Si 0.916 3.084 12 H -0.276 1.276 13 H -0.301 1.301 14 H -0.286 1.286 15 C 0.153 3.847 16 C -0.125 4.125 17 C -0.148 4.148 18 C -0.125 4.125 19 C 0.068 3.932 20 O -0.397 6.397 21 C 0.072 3.928 22 C -0.177 4.177 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.021 0.979 30 H 0.246 0.754 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 4.875 7.424 9.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 O -0.290 6.290 4 C 0.060 3.940 5 C -0.005 4.005 6 N -0.305 5.305 7 C -0.339 4.339 8 H 0.058 0.942 9 C -0.207 4.207 10 N -0.563 5.563 11 Si 0.746 3.254 12 H -0.201 1.201 13 H -0.228 1.228 14 H -0.212 1.212 15 C 0.048 3.952 16 C -0.183 4.183 17 C -0.208 4.208 18 C -0.162 4.162 19 C -0.008 4.008 20 O -0.316 6.316 21 C -0.005 4.005 22 C -0.216 4.216 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.321 4.964 7.511 9.298 hybrid contribution -0.998 -1.140 -0.998 1.814 sum 1.324 3.824 6.513 7.668 Atomic orbital electron populations 1.21609 0.94766 1.01467 1.01567 1.22498 0.94813 0.85186 1.00276 1.87792 1.21190 1.25979 1.94059 1.22133 0.81384 0.95311 0.95178 1.21589 0.93044 0.99768 0.86134 1.43742 1.15784 1.31572 1.39372 1.18772 0.88265 0.91669 1.35198 0.94176 1.25701 0.98151 0.97393 0.99413 1.69760 1.33807 1.00423 1.52357 0.86002 0.83321 0.78020 0.78009 1.20100 1.22838 1.21229 1.20745 0.91831 0.89081 0.93563 1.21694 0.98756 0.98906 0.98902 1.22181 0.98750 1.00217 0.99616 1.22057 1.00886 0.95304 0.97978 1.22563 0.96646 0.94644 0.86957 1.87816 1.68686 1.19447 1.55665 1.22488 0.99455 0.82010 0.96524 1.22719 1.01671 1.00496 0.96670 0.91728 0.94109 0.91409 0.91621 0.94607 0.89366 0.96034 0.94413 0.93766 0.94071 0.91575 0.94158 0.95381 0.91708 0.94619 0.90774 0.90892 0.93719 0.87472 0.93648 0.87354 0.91225 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 10.28 71.98 0.74 -4.27 16 2 C 0.05 1.96 5.35 71.98 0.38 2.34 16 3 O -0.37 -15.31 8.07 -148.98 -1.20 -16.51 16 4 C 0.10 3.85 0.48 -10.68 -0.01 3.85 16 5 C 0.12 5.35 4.04 86.37 0.35 5.69 16 6 N -0.58 -26.72 2.15 -678.05 -1.46 -28.18 16 7 C -0.21 -10.51 6.52 84.04 0.55 -9.96 16 8 H 0.04 2.15 6.90 -2.91 -0.02 2.13 16 9 C -0.01 -0.57 4.07 84.87 0.35 -0.23 16 10 N -0.92 -49.37 10.06 21.65 0.22 -49.15 16 11 Si 0.92 43.08 29.25 68.60 2.01 45.09 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 14 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 15 C 0.15 6.04 3.08 44.99 0.14 6.18 16 16 C -0.13 -4.64 8.09 71.98 0.58 -4.06 16 17 C -0.15 -5.53 9.33 71.98 0.67 -4.86 16 18 C -0.12 -4.22 4.05 30.69 0.12 -4.10 16 19 C 0.07 2.05 6.70 72.01 0.48 2.53 16 20 O -0.40 -12.32 10.77 -148.98 -1.60 -13.93 16 21 C 0.07 2.09 6.70 72.01 0.48 2.57 16 22 C -0.18 -5.80 4.49 30.68 0.14 -5.66 16 23 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.04 1.65 7.84 -2.38 -0.02 1.63 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.07 3.07 3.89 -2.39 -0.01 3.06 16 27 H 0.04 1.29 6.60 -2.39 -0.02 1.28 16 28 H 0.09 4.47 3.98 -2.38 -0.01 4.46 16 29 H 0.02 0.94 6.75 -2.39 -0.02 0.92 16 30 H 0.25 13.11 8.31 -92.70 -0.77 12.34 16 31 H 0.04 1.64 5.84 -2.39 -0.01 1.62 16 32 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.67 7.42 -2.39 -0.02 1.65 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.36 6.85 -2.39 -0.02 1.34 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.07 2.68 6.14 -2.39 -0.01 2.66 16 40 H 0.04 1.43 7.82 -2.38 -0.02 1.41 16 41 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.05 1.38 7.82 -2.39 -0.02 1.36 16 43 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.07 2.33 6.45 -2.38 -0.02 2.31 16 45 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -55.97 328.35 3.89 -52.08 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.95 Total: 20.57 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.98 Total: -9.97 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.24 Total: -77.34 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -2.81 Total: -30.44 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.01 Total: 45.09 kcal Total: -55.97 3.89 -52.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702657979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.308 kcal (2) G-P(sol) polarization free energy of solvation -55.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds