Wall clock time and date at job start Mon Mar 30 2020 05:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46999 * 2 1 4 4 C 1.52998 * 109.46976 * 239.99851 * 2 1 3 5 5 C 1.50703 * 109.46987 * 65.54312 * 4 2 1 6 6 H 1.07996 * 119.99917 * 4.43544 * 5 4 2 7 7 C 1.37877 * 119.99732 * 184.43486 * 5 4 2 8 8 N 1.31513 * 119.99885 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00184 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47199 * 89.99799 * 9 7 5 11 11 H 1.48501 * 109.47147 * 210.00156 * 9 7 5 12 12 H 1.48503 * 109.47204 * 330.00134 * 9 7 5 13 13 N 1.46896 * 109.46977 * 119.99857 * 2 1 3 14 14 C 1.48565 * 110.99995 * 181.43884 * 13 2 1 15 15 C 1.54384 * 104.59226 * 159.04253 * 14 13 2 16 16 C 1.52998 * 110.41204 * 95.09166 * 15 14 13 17 17 C 1.53005 * 110.32076 * 217.25283 * 15 14 13 18 18 O 1.42903 * 109.47145 * 295.63901 * 17 15 14 19 19 C 1.54262 * 105.06101 * 336.14752 * 15 14 13 20 20 C 1.53003 * 110.40646 * 241.05993 * 19 15 14 21 21 C 1.52997 * 110.32067 * 118.90020 * 19 15 14 22 22 O 1.42907 * 109.46653 * 182.90854 * 21 19 15 23 23 C 1.48556 * 111.00243 * 296.85847 * 13 2 1 24 24 H 1.09006 * 109.46962 * 59.99730 * 1 2 3 25 25 H 1.08994 * 109.47497 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46996 * 300.00313 * 1 2 3 27 27 H 1.09005 * 109.46941 * 185.53728 * 4 2 1 28 28 H 1.08995 * 109.47433 * 305.54073 * 4 2 1 29 29 H 0.97002 * 120.00069 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.41193 * 277.82163 * 14 13 2 31 31 H 1.08997 * 110.40897 * 40.26241 * 14 13 2 32 32 H 1.09004 * 109.46645 * 304.30921 * 16 15 14 33 33 H 1.09004 * 109.47342 * 64.30654 * 16 15 14 34 34 H 1.08996 * 109.47392 * 184.31271 * 16 15 14 35 35 H 1.09001 * 109.47309 * 55.63273 * 17 15 14 36 36 H 1.08994 * 109.46969 * 175.63885 * 17 15 14 37 37 H 0.96694 * 114.00010 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.46626 * 177.14084 * 20 19 15 39 39 H 1.08993 * 109.47493 * 297.14341 * 20 19 15 40 40 H 1.09006 * 109.47066 * 57.14757 * 20 19 15 41 41 H 1.08998 * 109.47213 * 302.90342 * 21 19 15 42 42 H 1.09004 * 109.47366 * 62.90713 * 21 19 15 43 43 H 0.96703 * 113.99201 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.41261 * 319.73792 * 23 13 2 45 45 H 1.08998 * 110.41141 * 82.06106 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6528 0.0639 -2.4759 6 1 1.1618 1.0202 -2.3721 7 6 1.9254 -0.4386 -3.7305 8 7 1.5880 0.2469 -4.8010 9 14 2.7754 -2.0923 -3.9099 10 1 1.7548 -3.1692 -3.9723 11 1 3.5819 -2.1017 -5.1568 12 1 3.6652 -2.3207 -2.7431 13 7 2.0196 -0.6925 1.1994 14 6 3.5043 -0.6822 1.2513 15 6 3.8433 -0.9273 2.7374 16 6 4.1026 -2.4143 2.9874 17 6 5.0631 -0.0998 3.1477 18 8 6.2080 -0.5445 2.4171 19 6 2.5946 -0.4629 3.5152 20 6 2.9523 0.6838 4.4629 21 6 1.9922 -1.6306 4.2991 22 8 0.8001 -1.1975 4.9576 23 6 1.6064 0.0237 2.4336 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.1255 -0.8080 -1.2010 28 1 1.5979 -1.7163 -1.3002 29 1 1.7802 -0.1065 -5.6837 30 1 3.9119 -1.4809 0.6317 31 1 3.8893 0.2849 0.9280 32 1 3.2410 -2.9940 2.6559 33 1 4.9867 -2.7274 2.4320 34 1 4.2646 -2.5809 4.0523 35 1 4.8789 0.9521 2.9291 36 1 5.2432 -0.2229 4.2155 37 1 7.0197 -0.0627 2.6267 38 1 2.0511 1.0334 4.9665 39 1 3.6697 0.3322 5.2043 40 1 3.3909 1.5029 3.8928 41 1 1.7537 -2.4437 3.6136 42 1 2.7108 -1.9795 5.0407 43 1 0.3635 -1.8883 5.4746 44 1 1.6943 1.1013 2.2954 45 1 0.5842 -0.2420 2.7031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704403496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:25 Heat of formation + Delta-G solvation = -100.823452 kcal Electronic energy + Delta-G solvation = -22991.819829 eV Core-core repulsion = 19816.121159 eV Total energy + Delta-G solvation = -3175.698670 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49409 -36.82650 -36.75059 -34.92583 -32.64026 -31.30843 -30.63699 -28.19887 -27.53823 -25.42476 -24.92160 -24.30495 -22.36018 -20.80310 -19.08158 -17.80081 -17.73919 -17.06900 -16.86472 -15.60301 -15.37242 -14.84944 -14.56291 -14.24068 -13.90016 -13.59057 -13.22080 -13.17356 -13.04665 -12.56201 -12.39900 -12.33734 -12.00653 -11.83888 -11.63605 -11.58093 -11.36742 -11.03847 -10.77516 -10.73590 -10.51390 -10.32368 -10.24620 -9.95787 -9.85282 -9.79045 -9.70153 -9.45077 -9.10150 -8.47672 -7.88796 -5.99621 -3.96606 3.36260 3.43121 3.49645 3.89150 4.35201 4.43220 4.51049 4.66130 4.70169 4.97296 5.09308 5.20008 5.23740 5.34780 5.35053 5.42320 5.47122 5.53321 5.70802 5.74665 5.76604 5.92922 5.95381 6.00491 6.03561 6.13709 6.21575 6.27709 6.32108 6.35212 6.41356 6.54734 6.67314 6.83647 7.08807 7.21954 7.33319 7.53203 7.58915 7.59307 7.69246 7.92811 8.58699 9.04682 9.63545 11.13653 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005710 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.795151 B = 4902.623895 C = 5541.838331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.085 3.915 3 H 0.034 0.966 4 C -0.002 4.002 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.510 5.510 14 C 0.054 3.946 15 C -0.056 4.056 16 C -0.135 4.135 17 C 0.088 3.912 18 O -0.567 6.567 19 C -0.053 4.053 20 C -0.141 4.141 21 C 0.093 3.907 22 O -0.572 6.572 23 C 0.047 3.953 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.014 0.986 28 H 0.020 0.980 29 H 0.262 0.738 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.375 0.625 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.375 0.625 44 H 0.038 0.962 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -2.762 21.480 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.052 0.948 4 C -0.040 4.040 5 C -0.553 4.553 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.234 5.234 14 C -0.074 4.074 15 C -0.056 4.056 16 C -0.192 4.192 17 C 0.010 3.990 18 O -0.372 6.372 19 C -0.054 4.054 20 C -0.198 4.198 21 C 0.015 3.985 22 O -0.377 6.377 23 C -0.081 4.081 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.221 0.779 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.222 0.778 44 H 0.057 0.943 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.455 -3.152 20.689 21.397 hybrid contribution 1.050 -0.069 0.208 1.073 sum 5.505 -3.221 20.897 21.849 Atomic orbital electron populations 1.21708 0.94805 1.01570 1.00576 1.21787 0.95467 0.95287 0.89696 0.94846 1.19596 0.95944 0.96225 0.92208 1.21091 1.38967 1.06234 0.89038 0.91019 1.24977 0.95269 0.97230 0.95859 1.69914 1.48064 1.38550 0.97892 0.86793 0.80253 0.84812 0.77551 1.20312 1.21559 1.18966 1.65503 1.07116 1.48863 1.01951 1.23033 0.89296 1.01202 0.93822 1.21313 0.92012 0.96278 0.96038 1.21833 1.02486 0.94261 1.00600 1.22397 0.85706 0.96766 0.94082 1.86521 1.19275 1.63622 1.67798 1.21262 0.94161 0.95106 0.94850 1.21912 1.01715 0.97460 0.98722 1.22299 0.85758 0.96004 0.94412 1.86452 1.40968 1.41511 1.68793 1.23112 0.99257 0.96118 0.89637 0.91130 0.92836 0.94820 0.96753 0.96215 0.92827 0.89800 0.93853 0.91596 0.91754 0.93252 0.93437 0.93637 0.77864 0.91632 0.92740 0.92511 0.92270 0.94023 0.77844 0.94328 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.94 37.16 0.33 -2.22 16 2 C 0.09 1.79 1.85 -67.72 -0.13 1.67 16 3 H 0.03 0.74 7.98 -51.93 -0.41 0.33 16 4 C 0.00 -0.05 3.52 -27.88 -0.10 -0.15 16 5 C -0.51 -14.83 8.88 -34.44 -0.31 -15.13 16 6 H 0.07 2.21 7.51 -52.49 -0.39 1.81 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 9 Si 0.88 22.43 27.38 -169.99 -4.65 17.78 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.60 6.67 56.52 0.38 -6.22 16 13 N -0.51 -9.21 5.20 -222.03 -1.15 -10.36 16 14 C 0.05 0.94 4.29 -2.18 -0.01 0.93 16 15 C -0.06 -0.74 0.83 -153.12 -0.13 -0.86 16 16 C -0.13 -1.66 7.11 37.16 0.26 -1.40 16 17 C 0.09 1.00 4.65 37.16 0.17 1.17 16 18 O -0.57 -6.72 12.71 -35.23 -0.45 -7.16 16 19 C -0.05 -0.67 0.83 -153.13 -0.13 -0.79 16 20 C -0.14 -1.53 7.11 37.16 0.26 -1.26 16 21 C 0.09 1.03 4.74 37.16 0.18 1.21 16 22 O -0.57 -6.18 12.35 -35.23 -0.44 -6.62 16 23 C 0.05 0.72 4.48 -2.18 -0.01 0.71 16 24 H 0.07 1.52 7.08 -51.93 -0.37 1.15 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.58 7.02 -51.93 -0.36 0.22 16 27 H 0.01 0.36 6.07 -51.93 -0.32 0.05 16 28 H 0.02 0.50 7.33 -51.93 -0.38 0.12 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.08 1.59 7.26 -51.93 -0.38 1.21 16 31 H 0.04 0.79 7.64 -51.93 -0.40 0.39 16 32 H 0.07 0.85 6.72 -51.93 -0.35 0.50 16 33 H 0.06 0.85 7.62 -51.93 -0.40 0.46 16 34 H 0.05 0.51 6.88 -51.93 -0.36 0.15 16 35 H 0.05 0.54 6.68 -51.93 -0.35 0.19 16 36 H 0.05 0.43 6.88 -51.93 -0.36 0.08 16 37 H 0.38 2.67 9.12 45.56 0.42 3.08 16 38 H 0.06 0.74 7.78 -51.93 -0.40 0.34 16 39 H 0.05 0.51 6.98 -51.93 -0.36 0.15 16 40 H 0.06 0.61 6.63 -51.93 -0.34 0.26 16 41 H 0.06 0.71 6.62 -51.93 -0.34 0.37 16 42 H 0.04 0.40 6.97 -51.93 -0.36 0.04 16 43 H 0.38 2.39 9.12 45.56 0.42 2.80 16 44 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 45 H 0.09 1.38 6.86 -51.93 -0.36 1.02 16 LS Contribution 332.01 15.07 5.00 5.00 Total: -1.00 -33.14 332.01 -6.74 -39.89 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.14 Total: 3.20 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 0.31 Total: -14.24 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.38 Total: -37.85 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.88 Total: -13.78 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.65 Total: 17.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.14 -6.74 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704403496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.936 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds