Wall clock time and date at job start Mon Mar 30 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46999 * 2 1 4 4 C 1.52998 * 109.46976 * 239.99851 * 2 1 3 5 5 C 1.50703 * 109.46987 * 65.54312 * 4 2 1 6 6 H 1.07996 * 119.99917 * 4.43544 * 5 4 2 7 7 C 1.37877 * 119.99732 * 184.43486 * 5 4 2 8 8 N 1.31513 * 119.99885 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00184 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47199 * 89.99799 * 9 7 5 11 11 H 1.48501 * 109.47147 * 210.00156 * 9 7 5 12 12 H 1.48503 * 109.47204 * 330.00134 * 9 7 5 13 13 N 1.46896 * 109.46977 * 119.99857 * 2 1 3 14 14 C 1.48565 * 110.99995 * 181.43884 * 13 2 1 15 15 C 1.54384 * 104.59226 * 159.04253 * 14 13 2 16 16 C 1.52998 * 110.41204 * 95.09166 * 15 14 13 17 17 C 1.53005 * 110.32076 * 217.25283 * 15 14 13 18 18 O 1.42903 * 109.47145 * 295.63901 * 17 15 14 19 19 C 1.54262 * 105.06101 * 336.14752 * 15 14 13 20 20 C 1.53003 * 110.40646 * 241.05993 * 19 15 14 21 21 C 1.52997 * 110.32067 * 118.90020 * 19 15 14 22 22 O 1.42907 * 109.46653 * 182.90854 * 21 19 15 23 23 C 1.48556 * 111.00243 * 296.85847 * 13 2 1 24 24 H 1.09006 * 109.46962 * 59.99730 * 1 2 3 25 25 H 1.08994 * 109.47497 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46996 * 300.00313 * 1 2 3 27 27 H 1.09005 * 109.46941 * 185.53728 * 4 2 1 28 28 H 1.08995 * 109.47433 * 305.54073 * 4 2 1 29 29 H 0.97002 * 120.00069 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.41193 * 277.82163 * 14 13 2 31 31 H 1.08997 * 110.40897 * 40.26241 * 14 13 2 32 32 H 1.09004 * 109.46645 * 304.30921 * 16 15 14 33 33 H 1.09004 * 109.47342 * 64.30654 * 16 15 14 34 34 H 1.08996 * 109.47392 * 184.31271 * 16 15 14 35 35 H 1.09001 * 109.47309 * 55.63273 * 17 15 14 36 36 H 1.08994 * 109.46969 * 175.63885 * 17 15 14 37 37 H 0.96694 * 114.00010 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.46626 * 177.14084 * 20 19 15 39 39 H 1.08993 * 109.47493 * 297.14341 * 20 19 15 40 40 H 1.09006 * 109.47066 * 57.14757 * 20 19 15 41 41 H 1.08998 * 109.47213 * 302.90342 * 21 19 15 42 42 H 1.09004 * 109.47366 * 62.90713 * 21 19 15 43 43 H 0.96703 * 113.99201 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.41261 * 319.73792 * 23 13 2 45 45 H 1.08998 * 110.41141 * 82.06106 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6528 0.0639 -2.4759 6 1 1.1618 1.0202 -2.3721 7 6 1.9254 -0.4386 -3.7305 8 7 1.5880 0.2469 -4.8010 9 14 2.7754 -2.0923 -3.9099 10 1 1.7548 -3.1692 -3.9723 11 1 3.5819 -2.1017 -5.1568 12 1 3.6652 -2.3207 -2.7431 13 7 2.0196 -0.6925 1.1994 14 6 3.5043 -0.6822 1.2513 15 6 3.8433 -0.9273 2.7374 16 6 4.1026 -2.4143 2.9874 17 6 5.0631 -0.0998 3.1477 18 8 6.2080 -0.5445 2.4171 19 6 2.5946 -0.4629 3.5152 20 6 2.9523 0.6838 4.4629 21 6 1.9922 -1.6306 4.2991 22 8 0.8001 -1.1975 4.9576 23 6 1.6064 0.0237 2.4336 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.1255 -0.8080 -1.2010 28 1 1.5979 -1.7163 -1.3002 29 1 1.7802 -0.1065 -5.6837 30 1 3.9119 -1.4809 0.6317 31 1 3.8893 0.2849 0.9280 32 1 3.2410 -2.9940 2.6559 33 1 4.9867 -2.7274 2.4320 34 1 4.2646 -2.5809 4.0523 35 1 4.8789 0.9521 2.9291 36 1 5.2432 -0.2229 4.2155 37 1 7.0197 -0.0627 2.6267 38 1 2.0511 1.0334 4.9665 39 1 3.6697 0.3322 5.2043 40 1 3.3909 1.5029 3.8928 41 1 1.7537 -2.4437 3.6136 42 1 2.7108 -1.9795 5.0407 43 1 0.3635 -1.8883 5.4746 44 1 1.6943 1.1013 2.2954 45 1 0.5842 -0.2420 2.7031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704403496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:24 Heat of formation + Delta-G solvation = -129.031568 kcal Electronic energy + Delta-G solvation = -22993.043025 eV Core-core repulsion = 19816.121159 eV Total energy + Delta-G solvation = -3176.921865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61994 -38.08850 -37.64775 -36.12985 -34.68230 -32.34188 -32.32801 -29.56692 -28.94854 -26.75945 -25.93798 -25.52130 -24.19458 -21.96896 -20.80902 -19.13472 -18.79769 -18.57685 -17.88821 -16.74856 -16.69616 -16.25649 -16.00653 -15.43679 -15.35381 -14.88931 -14.78595 -14.46923 -14.22598 -14.04981 -13.58202 -13.47150 -13.32817 -13.11982 -13.00608 -12.88338 -12.81774 -12.62286 -12.48395 -12.17307 -11.87143 -11.68764 -11.55419 -11.38538 -11.37065 -11.20588 -11.13504 -10.77205 -10.71210 -10.60845 -9.39145 -8.30757 -6.33204 1.32517 1.33785 1.46885 2.34082 2.97225 3.04501 3.16074 3.37698 3.62074 3.82632 3.98026 4.18056 4.18448 4.24829 4.26964 4.32162 4.42982 4.52689 4.55581 4.59975 4.61011 4.74252 4.77509 4.81500 4.86076 4.94023 4.96641 5.04395 5.10709 5.15140 5.18206 5.21620 5.27580 5.30916 5.43090 5.49237 5.51406 5.61647 5.98448 6.15587 6.30585 6.72643 6.96447 7.01930 7.30550 8.85729 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005710 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.795151 B = 4902.623895 C = 5541.838331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.092 3.908 3 H 0.016 0.984 4 C 0.007 3.993 5 C -0.521 4.521 6 H 0.036 0.964 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.256 1.256 13 N -0.512 5.512 14 C 0.052 3.948 15 C -0.052 4.052 16 C -0.129 4.129 17 C 0.090 3.910 18 O -0.589 6.589 19 C -0.049 4.049 20 C -0.136 4.136 21 C 0.097 3.903 22 O -0.586 6.586 23 C 0.047 3.953 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.009 0.991 28 H 0.018 0.982 29 H 0.266 0.734 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.395 0.605 44 H 0.031 0.969 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 -4.234 24.356 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.016 4.016 3 H 0.034 0.966 4 C -0.030 4.030 5 C -0.560 4.560 6 H 0.054 0.946 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.180 1.180 13 N -0.236 5.236 14 C -0.076 4.076 15 C -0.053 4.053 16 C -0.186 4.186 17 C 0.013 3.987 18 O -0.397 6.397 19 C -0.050 4.050 20 C -0.193 4.193 21 C 0.020 3.980 22 O -0.395 6.395 23 C -0.081 4.081 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.244 0.756 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.244 0.756 44 H 0.049 0.951 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.470 -4.624 23.599 24.662 hybrid contribution 0.695 0.473 -0.687 1.085 sum 6.165 -4.151 22.912 24.087 Atomic orbital electron populations 1.21590 0.93897 1.01680 1.00598 1.21542 0.96172 0.94020 0.89912 0.96640 1.19442 0.95478 0.95727 0.92378 1.21335 1.38341 1.05362 0.90935 0.94555 1.25869 0.96059 1.01314 0.95437 1.70048 1.49590 1.40664 0.98588 0.85737 0.79462 0.79967 0.77968 1.19075 1.20691 1.18011 1.65427 1.07896 1.48596 1.01668 1.23019 0.88442 0.99312 0.96797 1.21307 0.93427 0.97583 0.92970 1.21787 1.01483 0.93162 1.02212 1.22386 0.84796 0.96030 0.95508 1.86472 1.20407 1.64408 1.68435 1.21260 0.92892 0.96521 0.94342 1.21880 1.02172 0.96625 0.98630 1.22208 0.86505 0.94615 0.94700 1.86402 1.41048 1.42872 1.69133 1.23158 1.00129 0.95506 0.89311 0.93620 0.92574 0.92239 0.97299 0.96406 0.92479 0.92062 0.95701 0.92511 0.92975 0.90390 0.93679 0.90641 0.75567 0.91966 0.90335 0.92705 0.93416 0.91495 0.75566 0.95063 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.94 71.98 0.64 -4.18 16 2 C 0.09 3.96 1.85 44.92 0.08 4.05 16 3 H 0.02 0.72 7.98 -2.39 -0.02 0.70 16 4 C 0.01 0.38 3.52 29.85 0.10 0.48 16 5 C -0.52 -31.13 8.88 25.60 0.23 -30.90 16 6 H 0.04 2.36 7.51 -2.91 -0.02 2.34 16 7 C 0.01 0.61 5.47 84.65 0.46 1.08 16 8 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 9 Si 0.94 46.62 27.38 68.60 1.88 48.50 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.26 -12.17 6.67 99.48 0.66 -11.50 16 13 N -0.51 -18.42 5.20 -856.36 -4.45 -22.87 16 14 C 0.05 1.80 4.29 86.45 0.37 2.17 16 15 C -0.05 -1.28 0.83 -51.28 -0.04 -1.32 16 16 C -0.13 -2.87 7.11 71.98 0.51 -2.36 16 17 C 0.09 1.80 4.65 71.98 0.33 2.14 16 18 O -0.59 -12.74 12.71 -148.98 -1.89 -14.63 16 19 C -0.05 -1.12 0.83 -51.29 -0.04 -1.16 16 20 C -0.14 -2.50 7.11 71.98 0.51 -1.99 16 21 C 0.10 1.84 4.74 71.98 0.34 2.18 16 22 O -0.59 -10.81 12.35 -148.98 -1.84 -12.65 16 23 C 0.05 1.39 4.48 86.45 0.39 1.78 16 24 H 0.04 2.03 7.08 -2.38 -0.02 2.02 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.05 7.02 -2.38 -0.02 2.03 16 27 H 0.01 0.45 6.07 -2.38 -0.01 0.44 16 28 H 0.02 0.90 7.33 -2.39 -0.02 0.88 16 29 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.06 2.35 7.26 -2.39 -0.02 2.33 16 31 H 0.02 0.93 7.64 -2.39 -0.02 0.91 16 32 H 0.06 1.36 6.72 -2.39 -0.02 1.34 16 33 H 0.05 1.29 7.62 -2.39 -0.02 1.27 16 34 H 0.08 1.28 6.88 -2.39 -0.02 1.26 16 35 H 0.05 0.92 6.68 -2.39 -0.02 0.91 16 36 H 0.08 1.08 6.88 -2.39 -0.02 1.07 16 37 H 0.39 4.70 9.12 -74.06 -0.68 4.03 16 38 H 0.06 1.21 7.78 -2.39 -0.02 1.20 16 39 H 0.08 1.09 6.98 -2.39 -0.02 1.07 16 40 H 0.05 1.03 6.63 -2.38 -0.02 1.02 16 41 H 0.05 1.02 6.62 -2.39 -0.02 1.00 16 42 H 0.07 0.95 6.97 -2.39 -0.02 0.94 16 43 H 0.39 3.73 9.12 -74.06 -0.68 3.05 16 44 H 0.03 0.98 7.65 -2.39 -0.02 0.96 16 45 H 0.08 2.56 6.86 -2.39 -0.02 2.54 16 Total: -1.00 -73.14 332.01 -2.52 -75.66 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.41 Total: 14.49 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.89 Total: -28.04 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -4.15 Total: -83.32 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -3.73 Total: -27.28 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.50 kcal Total: -73.14 -2.52 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704403496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.374 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds