Wall clock time and date at job start Mon Mar 30 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46948 * 2 1 4 4 C 1.42897 * 113.99887 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46748 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.51048 * 54.91587 * 5 4 3 7 7 C 1.53098 * 109.50466 * 174.99602 * 5 4 3 8 8 N 1.47011 * 109.25995 * 176.78297 * 7 5 4 9 9 C 1.46906 * 111.00222 * 177.61070 * 8 7 5 10 10 C 1.52999 * 109.46897 * 170.00216 * 9 8 7 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46692 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99570 * 17 15 13 20 20 H 1.48492 * 109.46854 * 239.99727 * 17 15 13 21 21 C 1.47012 * 110.75337 * 301.38603 * 8 7 5 22 22 C 1.53101 * 109.25759 * 58.61484 * 21 8 7 23 23 O 1.43010 * 109.25677 * 303.15062 * 22 21 8 24 24 H 1.08998 * 109.47218 * 59.99616 * 1 2 3 25 25 H 1.09001 * 109.46854 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46857 * 299.99489 * 1 2 3 27 27 H 1.08997 * 109.46857 * 240.00511 * 2 1 3 28 28 H 1.08991 * 109.47299 * 120.00001 * 2 1 3 29 29 H 1.08996 * 109.47090 * 59.99885 * 4 3 2 30 30 H 1.09007 * 109.47076 * 299.99526 * 4 3 2 31 31 H 1.09005 * 109.50460 * 56.85061 * 7 5 4 32 32 H 1.09000 * 109.54364 * 296.74658 * 7 5 4 33 33 H 1.09000 * 109.47033 * 49.99963 * 9 8 7 34 34 H 1.09001 * 109.46544 * 290.00019 * 9 8 7 35 35 H 1.09000 * 109.47486 * 60.00024 * 10 9 8 36 36 H 1.09001 * 109.47362 * 299.99301 * 10 9 8 37 37 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 38 38 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 39 39 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 40 40 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 41 41 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.50857 * 178.55022 * 21 8 7 43 43 H 1.09001 * 109.51006 * 298.68024 * 21 8 7 44 44 H 1.09003 * 109.50790 * 183.21588 * 22 21 8 45 45 H 1.08996 * 109.54147 * 63.10847 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 1 3.3488 3.4427 0.8396 7 6 5.3461 3.0618 0.1241 8 7 5.7257 4.4799 0.0454 9 6 7.1749 4.6474 0.2184 10 6 7.5650 6.0889 -0.1145 11 6 9.0743 6.2634 0.0663 12 6 9.4644 7.7047 -0.2673 13 6 10.9511 7.8765 -0.0898 14 1 11.5570 7.0412 0.2285 15 6 11.5377 9.1002 -0.3339 16 7 10.7999 10.1173 -0.7221 17 14 13.3806 9.3130 -0.1147 18 1 13.9784 8.0267 0.3251 19 1 13.9881 9.7261 -1.4051 20 1 13.6399 10.3552 0.9108 21 6 5.2749 5.0703 -1.2232 22 6 3.7547 4.9268 -1.3349 23 8 3.4020 3.5453 -1.2251 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8332 0.9768 -0.8908 30 1 3.8340 0.9765 0.8893 31 1 5.8239 2.5117 -0.6866 32 1 5.6676 2.6514 1.0813 33 1 7.7017 3.9650 -0.4487 34 1 7.4453 4.4270 1.2511 35 1 7.0382 6.7712 0.5526 36 1 7.2946 6.3092 -1.1472 37 1 9.3443 6.0432 1.0990 38 1 9.6014 5.5810 -0.6005 39 1 9.1944 7.9246 -1.3001 40 1 8.9373 8.3873 0.3993 41 1 11.2126 10.9781 -0.8943 42 1 5.5437 6.1263 -1.2491 43 1 5.7515 4.5523 -2.0555 44 1 3.4227 5.3117 -2.2991 45 1 3.2756 5.4896 -0.5338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705804615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:14 Heat of formation + Delta-G solvation = -108.979970 kcal Electronic energy + Delta-G solvation = -20803.646780 eV Core-core repulsion = 17627.594417 eV Total energy + Delta-G solvation = -3176.052363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92102 -38.12229 -36.45512 -34.15346 -32.85167 -32.13755 -30.99822 -29.21797 -27.64041 -25.44383 -24.02881 -23.11799 -23.05914 -21.12661 -20.36659 -19.91587 -17.04771 -16.92327 -16.39817 -16.21412 -15.81297 -15.38796 -15.23314 -14.83505 -14.48713 -14.07387 -14.04605 -13.62464 -13.48946 -12.84683 -12.56848 -12.38690 -12.18367 -11.96028 -11.78028 -11.61420 -11.55140 -11.30599 -11.14211 -11.00251 -10.70971 -10.53495 -10.46801 -10.32005 -9.90395 -9.72719 -9.62160 -9.26426 -9.00998 -8.38437 -8.33581 -5.98727 -4.00923 3.21535 3.31238 3.38574 3.42773 3.56383 3.88898 4.46856 4.68004 4.70654 4.74811 4.86256 4.93705 4.94925 5.03313 5.07473 5.12042 5.22800 5.31032 5.36321 5.36845 5.40825 5.46511 5.54777 5.57827 5.70684 5.78780 5.79008 5.83623 5.89709 6.11207 6.22176 6.44826 6.76884 6.87704 6.91935 6.94255 6.98444 7.10050 7.19298 7.69908 7.85033 8.02035 8.44963 9.06687 9.63058 11.12636 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.062669 B = 0.002414 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.685716 B =11597.049365 C =11921.802481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.072 3.928 5 C 0.097 3.903 6 H 0.075 0.925 7 C 0.026 3.974 8 N -0.536 5.536 9 C 0.057 3.943 10 C -0.121 4.121 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.010 3.990 22 C 0.064 3.936 23 O -0.376 6.376 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 -19.086 1.040 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.005 4.005 5 C 0.039 3.961 6 H 0.093 0.907 7 C -0.103 4.103 8 N -0.261 5.261 9 C -0.070 4.070 10 C -0.159 4.159 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.118 4.118 22 C -0.013 4.013 23 O -0.295 6.295 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.640 -18.601 1.232 26.362 hybrid contribution 1.878 -0.276 -0.381 1.936 sum -16.761 -18.876 0.851 25.259 Atomic orbital electron populations 1.21734 0.93700 1.02122 1.03270 1.22462 0.95725 0.83896 0.99951 1.87950 1.20456 1.26153 1.95388 1.22437 0.82032 0.95151 1.00874 1.22059 0.92994 0.92495 0.88584 0.90714 1.22653 0.95284 0.90208 1.02121 1.62276 1.16007 1.13929 1.33892 1.22281 0.85102 0.98399 1.01262 1.21815 0.98559 0.94133 1.01343 1.21597 0.92004 1.00882 1.00216 1.19094 0.96015 0.89763 0.96744 1.21322 0.93373 0.95914 1.45201 0.92711 1.25040 0.98060 0.96112 0.95375 1.69975 1.35236 1.01519 1.46794 0.86548 0.85732 0.78084 0.77717 1.19779 1.21039 1.21012 1.22941 0.96145 1.02100 0.90637 1.22705 0.93676 0.82509 1.02406 1.88013 1.79255 1.24245 1.37971 0.91740 0.91186 0.91847 0.93437 0.93506 0.92539 0.91736 0.93919 0.89594 0.94930 0.90601 0.91532 0.92273 0.93346 0.93650 0.96756 0.96583 0.93091 0.88289 0.93976 0.88384 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.20 10.31 -39.72 -0.41 -4.61 16 4 C 0.07 0.69 5.60 37.16 0.21 0.90 16 5 C 0.10 1.10 3.09 -26.68 -0.08 1.02 16 6 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 7 C 0.03 0.29 4.91 -3.71 -0.02 0.27 16 8 N -0.54 -7.09 4.88 -234.30 -1.14 -8.23 16 9 C 0.06 0.80 5.28 -3.82 -0.02 0.78 16 10 C -0.12 -2.04 4.48 -26.73 -0.12 -2.16 16 11 C -0.11 -2.24 5.15 -26.73 -0.14 -2.37 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.01 0.12 4.94 -3.71 -0.02 0.11 16 22 C 0.06 0.74 7.01 37.21 0.26 1.01 16 23 O -0.38 -4.94 10.44 -39.72 -0.41 -5.35 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.99 6.28 -51.93 -0.33 0.67 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 1.29 6.05 -51.93 -0.31 0.98 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -31.89 357.87 -9.34 -41.23 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -8.63 Total: -5.05 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 0.15 Total: -13.72 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.41 Total: -34.72 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.82 Total: -9.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.89 -9.34 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705804615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.752 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds