Wall clock time and date at job start Mon Mar 30 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46948 * 2 1 4 4 C 1.42897 * 113.99887 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46748 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.51048 * 54.91587 * 5 4 3 7 7 C 1.53098 * 109.50466 * 174.99602 * 5 4 3 8 8 N 1.47011 * 109.25995 * 176.78297 * 7 5 4 9 9 C 1.46906 * 111.00222 * 177.61070 * 8 7 5 10 10 C 1.52999 * 109.46897 * 170.00216 * 9 8 7 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46692 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99570 * 17 15 13 20 20 H 1.48492 * 109.46854 * 239.99727 * 17 15 13 21 21 C 1.47012 * 110.75337 * 301.38603 * 8 7 5 22 22 C 1.53101 * 109.25759 * 58.61484 * 21 8 7 23 23 O 1.43010 * 109.25677 * 303.15062 * 22 21 8 24 24 H 1.08998 * 109.47218 * 59.99616 * 1 2 3 25 25 H 1.09001 * 109.46854 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46857 * 299.99489 * 1 2 3 27 27 H 1.08997 * 109.46857 * 240.00511 * 2 1 3 28 28 H 1.08991 * 109.47299 * 120.00001 * 2 1 3 29 29 H 1.08996 * 109.47090 * 59.99885 * 4 3 2 30 30 H 1.09007 * 109.47076 * 299.99526 * 4 3 2 31 31 H 1.09005 * 109.50460 * 56.85061 * 7 5 4 32 32 H 1.09000 * 109.54364 * 296.74658 * 7 5 4 33 33 H 1.09000 * 109.47033 * 49.99963 * 9 8 7 34 34 H 1.09001 * 109.46544 * 290.00019 * 9 8 7 35 35 H 1.09000 * 109.47486 * 60.00024 * 10 9 8 36 36 H 1.09001 * 109.47362 * 299.99301 * 10 9 8 37 37 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 38 38 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 39 39 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 40 40 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 41 41 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.50857 * 178.55022 * 21 8 7 43 43 H 1.09001 * 109.51006 * 298.68024 * 21 8 7 44 44 H 1.09003 * 109.50790 * 183.21588 * 22 21 8 45 45 H 1.08996 * 109.54147 * 63.10847 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 1 3.3488 3.4427 0.8396 7 6 5.3461 3.0618 0.1241 8 7 5.7257 4.4799 0.0454 9 6 7.1749 4.6474 0.2184 10 6 7.5650 6.0889 -0.1145 11 6 9.0743 6.2634 0.0663 12 6 9.4644 7.7047 -0.2673 13 6 10.9511 7.8765 -0.0898 14 1 11.5570 7.0412 0.2285 15 6 11.5377 9.1002 -0.3339 16 7 10.7999 10.1173 -0.7221 17 14 13.3806 9.3130 -0.1147 18 1 13.9784 8.0267 0.3251 19 1 13.9881 9.7261 -1.4051 20 1 13.6399 10.3552 0.9108 21 6 5.2749 5.0703 -1.2232 22 6 3.7547 4.9268 -1.3349 23 8 3.4020 3.5453 -1.2251 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8332 0.9768 -0.8908 30 1 3.8340 0.9765 0.8893 31 1 5.8239 2.5117 -0.6866 32 1 5.6676 2.6514 1.0813 33 1 7.7017 3.9650 -0.4487 34 1 7.4453 4.4270 1.2511 35 1 7.0382 6.7712 0.5526 36 1 7.2946 6.3092 -1.1472 37 1 9.3443 6.0432 1.0990 38 1 9.6014 5.5810 -0.6005 39 1 9.1944 7.9246 -1.3001 40 1 8.9373 8.3873 0.3993 41 1 11.2126 10.9781 -0.8943 42 1 5.5437 6.1263 -1.2491 43 1 5.7515 4.5523 -2.0555 44 1 3.4227 5.3117 -2.2991 45 1 3.2756 5.4896 -0.5338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705804615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:14 Heat of formation + Delta-G solvation = -129.930951 kcal Electronic energy + Delta-G solvation = -20804.555283 eV Core-core repulsion = 17627.594417 eV Total energy + Delta-G solvation = -3176.960866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86542 -38.88310 -37.62256 -35.89767 -34.12259 -33.53080 -31.70043 -30.72723 -28.84822 -26.84616 -25.29574 -24.32117 -23.65375 -22.49937 -21.67816 -21.20111 -18.44355 -17.82451 -17.67279 -17.38467 -16.67307 -16.50977 -16.48470 -16.06339 -15.88312 -15.36014 -15.08327 -14.59651 -14.39840 -14.15501 -13.91060 -13.59117 -13.38741 -13.20439 -13.01536 -12.88340 -12.54561 -12.44832 -12.26602 -12.25583 -12.23696 -11.99487 -11.84660 -11.57009 -11.35897 -11.25123 -11.03858 -10.62934 -10.56660 -10.56069 -9.41142 -8.20646 -6.31955 1.39252 1.39555 1.53030 2.39774 2.46370 2.70002 2.97731 3.12199 3.84212 3.88565 3.96153 4.03056 4.07522 4.13736 4.18848 4.23318 4.37244 4.41692 4.46047 4.48634 4.50424 4.51752 4.60357 4.62844 4.76125 4.79672 4.85012 4.88942 4.96857 4.99344 5.05152 5.20172 5.26244 5.28051 5.31647 5.53751 5.76422 5.85778 5.91581 5.96191 6.14203 6.25260 6.29392 6.85826 7.37425 8.91345 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.062669 B = 0.002414 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.685716 B =11597.049365 C =11921.802481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.074 3.926 5 C 0.095 3.905 6 H 0.067 0.933 7 C 0.029 3.971 8 N -0.545 5.545 9 C 0.067 3.933 10 C -0.110 4.110 11 C -0.096 4.096 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.011 3.989 22 C 0.066 3.934 23 O -0.393 6.393 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.049 0.951 39 H -0.011 1.011 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.113 0.887 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.696 -20.872 1.623 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.328 6.328 4 C -0.003 4.003 5 C 0.037 3.963 6 H 0.085 0.915 7 C -0.099 4.099 8 N -0.270 5.270 9 C -0.061 4.061 10 C -0.148 4.148 11 C -0.134 4.134 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.117 4.117 22 C -0.011 4.011 23 O -0.312 6.312 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.131 0.869 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.152 -20.408 1.819 27.373 hybrid contribution 1.663 0.287 -0.571 1.781 sum -16.489 -20.121 1.248 26.044 Atomic orbital electron populations 1.21764 0.93137 1.03335 1.02509 1.22675 0.96280 0.82739 1.00999 1.87912 1.21152 1.28147 1.95612 1.22481 0.81747 0.93963 1.02131 1.22163 0.92932 0.93540 0.87643 0.91548 1.22696 0.95193 0.88847 1.03187 1.62264 1.15113 1.15510 1.34113 1.22097 0.85984 0.96118 1.01853 1.21632 0.95803 0.96210 1.01118 1.21397 0.94577 0.97039 1.00437 1.19022 0.94975 0.92871 0.94568 1.21776 0.94731 0.96381 1.45293 0.92164 1.26025 1.03515 0.95752 0.94836 1.70107 1.37588 1.02138 1.47602 0.85379 0.79168 0.78487 0.77894 1.18529 1.20362 1.20334 1.22920 0.96905 1.01528 0.90386 1.22748 0.92842 0.82212 1.03280 1.87998 1.79543 1.24760 1.38939 0.92768 0.89000 0.92316 0.92810 0.91945 0.92325 0.89313 0.93768 0.87718 0.94471 0.89682 0.92339 0.92503 0.92806 0.93198 0.99257 0.99156 0.92790 0.89076 0.94428 0.86880 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.41 -8.53 10.31 -144.69 -1.49 -10.02 16 4 C 0.07 1.29 5.60 71.98 0.40 1.69 16 5 C 0.10 2.04 3.09 30.63 0.09 2.13 16 6 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 7 C 0.03 0.59 4.91 86.31 0.42 1.02 16 8 N -0.54 -13.71 4.88 -895.19 -4.36 -18.07 16 9 C 0.07 1.79 5.28 86.30 0.46 2.25 16 10 C -0.11 -3.68 4.48 30.60 0.14 -3.54 16 11 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16 12 C 0.02 1.22 4.97 29.85 0.15 1.37 16 13 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 16 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 17 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 C 0.01 0.27 4.94 86.32 0.43 0.69 16 22 C 0.07 1.50 7.01 72.02 0.50 2.00 16 23 O -0.39 -10.01 10.44 -144.69 -1.51 -11.52 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.92 6.28 -2.39 -0.01 1.90 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 42 H 0.09 2.38 6.05 -2.39 -0.01 2.37 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.32 357.87 0.52 -67.80 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.91 Total: 9.53 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.67 Total: -27.07 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -4.08 Total: -75.44 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -3.00 Total: -21.54 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.32 0.52 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705804615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.127 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds