Wall clock time and date at job start Mon Mar 30 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47468 * 2 1 4 4 C 1.53002 * 109.47057 * 240.00360 * 2 1 3 5 5 H 1.09000 * 109.48213 * 65.87183 * 4 2 1 6 6 C 1.53096 * 109.48041 * 185.89964 * 4 2 1 7 7 C 1.53183 * 109.15811 * 177.59072 * 6 4 2 8 8 C 1.53169 * 109.03573 * 303.01441 * 7 6 4 9 9 C 1.53087 * 109.16474 * 56.98849 * 8 7 6 10 10 O 1.42902 * 109.47738 * 305.84041 * 4 2 1 11 11 N 1.46898 * 109.47412 * 120.00212 * 2 1 3 12 12 C 1.46900 * 111.00007 * 51.66738 * 11 2 1 13 13 C 1.46897 * 111.00147 * 287.71391 * 11 2 1 14 14 C 1.53002 * 109.47210 * 190.00116 * 13 11 2 15 15 O 1.42895 * 109.47377 * 64.99682 * 14 13 11 16 16 C 1.42904 * 114.00311 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47239 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99747 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00068 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 60.00253 * 21 19 17 23 23 H 1.48498 * 109.46919 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47264 * 300.00454 * 21 19 17 25 25 H 1.09003 * 109.47468 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47530 * 59.99789 * 1 2 3 27 27 H 1.09001 * 109.46878 * 299.99642 * 1 2 3 28 28 H 1.08995 * 109.51908 * 297.49255 * 6 4 2 29 29 H 1.08996 * 109.52287 * 57.62315 * 6 4 2 30 30 H 1.08992 * 109.54672 * 62.89118 * 7 6 4 31 31 H 1.09002 * 109.53681 * 183.14879 * 7 6 4 32 32 H 1.09004 * 109.51963 * 176.88846 * 8 7 6 33 33 H 1.08997 * 109.53088 * 297.07655 * 8 7 6 34 34 H 1.09003 * 109.48438 * 62.36643 * 9 8 7 35 35 H 1.09004 * 109.48354 * 182.39485 * 9 8 7 36 36 H 1.09000 * 109.47169 * 66.64441 * 12 11 2 37 37 H 1.08997 * 109.47434 * 186.64568 * 12 11 2 38 38 H 1.09001 * 109.47046 * 306.64840 * 12 11 2 39 39 H 1.08999 * 109.46889 * 309.99858 * 13 11 2 40 40 H 1.09000 * 109.47475 * 69.99789 * 13 11 2 41 41 H 1.09000 * 109.47193 * 184.99703 * 14 13 11 42 42 H 1.08996 * 109.46871 * 304.99878 * 14 13 11 43 43 H 1.09000 * 109.47047 * 300.00235 * 16 15 14 44 44 H 1.09005 * 109.46410 * 60.00039 * 16 15 14 45 45 H 0.96994 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.7650 -0.1503 -2.1363 6 6 3.5637 -0.8511 -1.1776 7 6 4.0603 -1.6266 -2.4017 8 6 3.3622 -2.9892 -2.4467 9 6 1.8463 -2.7768 -2.4695 10 8 1.4550 -2.0231 -1.3201 11 7 2.0196 -0.6925 1.1994 12 6 1.3932 -2.0141 1.3368 13 6 1.8018 0.1211 2.4029 14 6 2.5393 -0.5101 3.5856 15 8 3.9476 -0.4642 3.3481 16 6 4.7331 -1.0310 4.3988 17 6 6.1943 -0.9300 4.0442 18 1 6.4933 -0.4778 3.1102 19 6 7.1494 -1.4149 4.9123 20 7 6.7852 -1.9660 6.0495 21 14 8.9607 -1.2890 4.4732 22 1 9.3289 0.1386 4.2957 23 1 9.7768 -1.8781 5.5650 24 1 9.2162 -2.0267 3.2100 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 4.0137 0.1416 -1.1680 29 1 3.8413 -1.3857 -0.2692 30 1 3.8266 -1.0670 -3.3073 31 1 5.1382 -1.7713 -2.3289 32 1 3.6683 -3.5257 -3.3449 33 1 3.6357 -3.5681 -1.5646 34 1 1.5689 -2.2330 -3.3725 35 1 1.3435 -3.7439 -2.4586 36 1 1.7238 -2.6594 0.5229 37 1 1.6819 -2.4556 2.2907 38 1 0.3090 -1.9080 1.2989 39 1 2.1814 1.1287 2.2339 40 1 0.7351 0.1668 2.6224 41 1 2.3062 0.0424 4.4958 42 1 2.2236 -1.5471 3.6990 43 1 4.5454 -0.4890 5.3256 44 1 4.4629 -2.0789 4.5295 45 1 7.4572 -2.3068 6.6604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706035019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:12 Heat of formation + Delta-G solvation = -95.136469 kcal Electronic energy + Delta-G solvation = -22390.917273 eV Core-core repulsion = 19215.465209 eV Total energy + Delta-G solvation = -3175.452064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88366 -37.69263 -36.09886 -33.53465 -32.78201 -32.04343 -29.66130 -28.57789 -26.81658 -25.98650 -24.76373 -23.50365 -22.21988 -21.26388 -20.18933 -19.55799 -16.71956 -16.35095 -16.04059 -15.56307 -15.27858 -14.81407 -14.67326 -14.44567 -14.24822 -13.92187 -13.78790 -13.21589 -13.00609 -12.91294 -12.57776 -11.98230 -11.87144 -11.75948 -11.64128 -11.45344 -11.16421 -11.01406 -10.98566 -10.83960 -10.75854 -10.65750 -10.48361 -10.31613 -10.04089 -9.79485 -9.26146 -9.00970 -8.70004 -8.04114 -7.82881 -6.03369 -4.03980 3.36793 3.39010 3.43310 3.80260 4.17509 4.41676 4.69456 4.87285 4.95106 4.97104 5.06087 5.13786 5.26242 5.31702 5.32999 5.42122 5.48642 5.58134 5.61274 5.67831 5.72370 5.76846 5.82747 5.88854 5.97039 6.00625 6.06206 6.12962 6.18355 6.22975 6.25040 6.34911 6.41679 6.64961 6.75831 7.20720 7.27094 7.44226 7.47317 7.53759 7.88333 8.25993 8.72430 9.11058 9.60529 11.08382 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.004818 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.288857 B = 5810.050257 C = 6826.256423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.089 0.911 4 C 0.104 3.896 5 H 0.052 0.948 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.155 4.155 9 C 0.061 3.939 10 O -0.370 6.370 11 N -0.512 5.512 12 C 0.016 3.984 13 C 0.059 3.941 14 C 0.067 3.933 15 O -0.379 6.379 16 C 0.195 3.805 17 C -0.509 4.509 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.001 0.999 44 H 0.002 0.998 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 1.148 -16.143 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.107 0.893 4 C 0.047 3.953 5 H 0.070 0.930 6 C -0.181 4.181 7 C -0.160 4.160 8 C -0.193 4.193 9 C -0.016 4.016 10 O -0.289 6.289 11 N -0.235 5.235 12 C -0.132 4.132 13 C -0.069 4.069 14 C -0.011 4.011 15 O -0.298 6.298 16 C 0.120 3.880 17 C -0.547 4.547 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.541 5.541 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.212 1.003 -16.045 20.189 hybrid contribution 0.165 0.085 0.072 0.199 sum -12.047 1.088 -15.973 20.036 Atomic orbital electron populations 1.22401 0.97537 1.02959 1.01343 1.21770 0.92800 0.97373 0.90159 0.89257 1.22093 0.93164 0.83807 0.96277 0.92995 1.22092 0.94839 1.01497 0.99684 1.21600 1.00462 0.95713 0.98219 1.22166 0.96278 0.98224 1.02655 1.22495 0.94511 0.96016 0.88559 1.87992 1.69507 1.27701 1.43739 1.62105 1.57173 1.03069 1.01194 1.22702 0.96110 0.91304 1.03055 1.22144 0.96633 0.97752 0.90351 1.22275 0.85483 0.98383 0.94988 1.87935 1.13466 1.82322 1.46121 1.20148 0.90267 0.92201 0.85352 1.21023 0.89811 1.38812 1.05047 0.91628 1.24938 0.99547 0.95223 0.94829 1.69957 1.34106 1.40187 1.09803 0.86424 0.83820 0.78458 0.77924 1.20087 1.21250 1.20056 0.90973 0.92734 0.92935 0.91377 0.88353 0.92768 0.91561 0.91613 0.90733 0.93915 0.89415 0.89237 0.92080 0.95867 0.90513 0.94532 0.94625 0.94506 0.98158 0.98022 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.21 37.15 0.31 -1.72 16 2 C 0.09 1.11 2.40 -67.72 -0.16 0.95 16 3 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 4 C 0.10 1.26 2.47 -26.68 -0.07 1.19 16 5 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.14 -1.91 5.24 -26.59 -0.14 -2.05 16 7 C -0.12 -1.38 6.03 -26.55 -0.16 -1.54 16 8 C -0.16 -1.63 6.14 -26.60 -0.16 -1.79 16 9 C 0.06 0.61 6.84 37.20 0.25 0.86 16 10 O -0.37 -4.53 6.35 -35.23 -0.22 -4.75 16 11 N -0.51 -7.87 3.59 -234.89 -0.84 -8.71 16 12 C 0.02 0.23 8.36 60.06 0.50 0.74 16 13 C 0.06 0.92 4.97 -3.82 -0.02 0.90 16 14 C 0.07 1.29 6.01 37.16 0.22 1.51 16 15 O -0.38 -9.42 10.27 -35.23 -0.36 -9.78 16 16 C 0.19 5.50 5.69 36.00 0.20 5.71 16 17 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16 18 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 21 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H 0.07 0.85 5.59 -51.93 -0.29 0.56 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 7.00 -51.93 -0.36 0.20 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.65 7.37 -51.93 -0.38 1.27 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.36 5.67 -51.93 -0.29 1.06 16 37 H 0.06 0.99 5.99 -51.93 -0.31 0.67 16 38 H 0.02 0.31 5.79 -51.93 -0.30 0.01 16 39 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 40 H 0.04 0.50 7.13 -51.93 -0.37 0.13 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.71 6.16 -51.93 -0.32 0.39 16 43 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -31.52 341.90 -8.27 -39.79 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -8.07 Total: -2.85 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 0.36 Total: -9.34 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.11 Total: -35.47 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.59 Total: -14.53 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.52 -8.27 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706035019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.344 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds