Wall clock time and date at job start Mon Mar 30 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.53000 * 109.47144 * 240.00401 * 2 1 3 5 5 H 1.09006 * 109.47941 * 183.93743 * 4 2 1 6 6 C 1.53087 * 109.48376 * 63.91272 * 4 2 1 7 7 C 1.53181 * 109.16300 * 182.42199 * 6 4 2 8 8 C 1.53169 * 109.04692 * 56.96321 * 7 6 4 9 9 C 1.53094 * 109.16475 * 303.02403 * 8 7 6 10 10 O 1.42904 * 109.47811 * 303.95727 * 4 2 1 11 11 N 1.46900 * 109.47642 * 120.00017 * 2 1 3 12 12 C 1.46903 * 110.99539 * 311.58732 * 11 2 1 13 13 C 1.46901 * 111.00524 * 187.63502 * 11 2 1 14 14 C 1.52991 * 109.47086 * 199.82177 * 13 11 2 15 15 O 1.42902 * 109.47382 * 64.99721 * 14 13 11 16 16 C 1.42901 * 113.99918 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.46936 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00142 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00281 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99916 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46900 * 89.99797 * 21 19 17 23 23 H 1.48498 * 109.47353 * 210.00072 * 21 19 17 24 24 H 1.48506 * 109.47053 * 330.00164 * 21 19 17 25 25 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46809 * 299.99777 * 1 2 3 27 27 H 1.08997 * 109.47108 * 60.00443 * 1 2 3 28 28 H 1.08994 * 109.52098 * 302.31639 * 6 4 2 29 29 H 1.09000 * 109.52049 * 62.50623 * 6 4 2 30 30 H 1.09000 * 109.53174 * 297.09825 * 7 6 4 31 31 H 1.08997 * 109.61481 * 176.88310 * 7 6 4 32 32 H 1.09007 * 109.52587 * 183.12269 * 8 7 6 33 33 H 1.08996 * 109.52487 * 62.93316 * 8 7 6 34 34 H 1.08997 * 109.48275 * 297.62963 * 9 8 7 35 35 H 1.08997 * 109.48493 * 177.58615 * 9 8 7 36 36 H 1.09002 * 109.47455 * 303.47403 * 12 11 2 37 37 H 1.08996 * 109.47396 * 63.47664 * 12 11 2 38 38 H 1.09009 * 109.46838 * 183.47471 * 12 11 2 39 39 H 1.09000 * 109.46649 * 319.82180 * 13 11 2 40 40 H 1.08994 * 109.47231 * 79.81538 * 13 11 2 41 41 H 1.08999 * 109.47220 * 184.99937 * 14 13 11 42 42 H 1.09001 * 109.47067 * 304.99570 * 14 13 11 43 43 H 1.08996 * 109.47135 * 299.99673 * 16 15 14 44 44 H 1.09000 * 109.47223 * 60.00296 * 16 15 14 45 45 H 0.96993 * 120.00426 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1278 -0.7828 -1.2148 6 6 1.6119 0.0550 -2.4974 7 6 2.0737 -0.7046 -3.7449 8 6 1.4907 -2.1207 -3.7123 9 6 1.9238 -2.8127 -2.4172 10 8 1.4893 -2.0390 -1.2969 11 7 2.0198 -0.6925 1.1994 12 6 1.3370 -0.2040 2.4049 13 6 3.4768 -0.5563 1.3279 14 6 4.0118 -1.6515 2.2526 15 8 3.8034 -2.9294 1.6478 16 6 4.2706 -4.0275 2.4338 17 6 4.0006 -5.3183 1.7042 18 1 3.5206 -5.3016 0.7369 19 6 4.3673 -6.5204 2.2712 20 7 4.1321 -7.6467 1.6343 21 14 5.1981 -6.5492 3.9440 22 1 4.1662 -6.6462 5.0075 23 1 6.1052 -7.7220 4.0261 24 1 5.9832 -5.3022 4.1284 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.5264 0.1521 -2.5114 29 1 2.0671 1.0453 -2.4845 30 1 3.1623 -0.7587 -3.7565 31 1 1.7247 -0.1871 -4.6385 32 1 1.8592 -2.6862 -4.5682 33 1 0.4027 -2.0677 -3.7507 34 1 3.0100 -2.9017 -2.3982 35 1 1.4767 -3.8056 -2.3684 36 1 1.4691 0.8750 2.4853 37 1 0.2741 -0.4361 2.3397 38 1 1.7614 -0.6885 3.2843 39 1 3.9388 -0.6526 0.3454 40 1 3.7148 0.4213 1.7470 41 1 5.0780 -1.4978 2.4190 42 1 3.4856 -1.6108 3.2064 43 1 5.3422 -3.9230 2.6035 44 1 3.7502 -4.0363 3.3916 45 1 4.3897 -8.4924 2.0333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706035020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:15 Heat of formation + Delta-G solvation = -90.478659 kcal Electronic energy + Delta-G solvation = -22483.333846 eV Core-core repulsion = 19308.083760 eV Total energy + Delta-G solvation = -3175.250086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.64898 -37.68197 -36.23631 -33.40350 -32.76924 -32.25917 -30.08271 -28.33707 -27.39478 -26.23868 -24.49125 -23.22150 -21.74256 -21.39890 -20.39208 -19.51931 -16.75316 -16.28103 -16.07156 -15.86712 -15.35011 -14.83487 -14.73445 -14.36403 -14.33084 -13.90208 -13.76131 -13.22809 -12.82687 -12.63909 -12.48069 -12.43053 -12.29121 -11.94851 -11.66457 -11.50760 -11.33999 -11.22814 -10.92377 -10.89101 -10.79249 -10.64664 -10.38535 -10.30171 -9.88426 -9.75623 -9.05472 -9.02805 -8.70043 -8.30978 -7.93836 -6.01688 -3.98793 3.30873 3.37229 3.39255 3.96440 4.11521 4.43956 4.74695 4.76828 4.87651 4.90626 5.05994 5.16242 5.22527 5.29819 5.32227 5.44537 5.47373 5.49217 5.64033 5.68595 5.69576 5.75090 5.82358 5.87098 5.90899 5.94887 5.97104 5.98512 6.03423 6.12706 6.16056 6.27901 6.29476 6.36063 6.49489 6.72840 7.12575 7.32995 7.34047 7.69763 7.72163 8.19681 8.82066 9.13296 9.59010 11.11651 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005277 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.302359 B = 5304.415325 C = 6330.105924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 H 0.044 0.956 4 C 0.101 3.899 5 H 0.057 0.943 6 C -0.152 4.152 7 C -0.120 4.120 8 C -0.156 4.156 9 C 0.061 3.939 10 O -0.346 6.346 11 N -0.514 5.514 12 C 0.024 3.976 13 C 0.057 3.943 14 C 0.066 3.934 15 O -0.358 6.358 16 C 0.168 3.832 17 C -0.509 4.509 18 H 0.083 0.917 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.874 3.126 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.268 1.268 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.016 0.984 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.036 0.964 43 H -0.003 1.003 44 H -0.005 1.005 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 18.668 -6.086 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 H 0.061 0.939 4 C 0.042 3.958 5 H 0.075 0.925 6 C -0.190 4.190 7 C -0.158 4.158 8 C -0.194 4.194 9 C -0.016 4.016 10 O -0.264 6.264 11 N -0.238 5.238 12 C -0.124 4.124 13 C -0.071 4.071 14 C -0.012 4.012 15 O -0.277 6.277 16 C 0.092 3.908 17 C -0.547 4.547 18 H 0.101 0.899 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.701 3.299 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.192 1.192 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.015 0.985 44 H 0.012 0.988 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.254 17.864 -6.158 19.612 hybrid contribution 1.047 0.812 1.051 1.692 sum -4.207 18.676 -5.106 19.814 Atomic orbital electron populations 1.21895 0.93967 1.03624 1.00797 1.21596 0.96297 0.93823 0.89876 0.93871 1.22024 0.97016 0.84155 0.92620 0.92546 1.22285 1.02245 0.99012 0.95477 1.21558 1.00679 0.96000 0.97556 1.22226 1.01485 0.96437 0.99256 1.22531 0.99369 0.94946 0.84777 1.88100 1.69328 1.23900 1.45039 1.61806 1.03991 1.56487 1.01501 1.22466 1.00234 0.96479 0.93211 1.22192 0.88273 0.95667 1.00967 1.22273 0.97116 0.86572 0.95255 1.88048 1.82568 1.12143 1.44923 1.20560 0.92542 0.86224 0.91466 1.20905 1.39339 0.87679 1.06755 0.89867 1.24758 0.95628 0.95254 0.97412 1.69876 1.47882 0.97527 1.38465 0.86878 0.80041 0.77919 0.85047 1.20030 1.20941 1.19238 0.90410 0.92884 0.92533 0.90842 0.91575 0.91969 0.91958 0.91265 0.91404 0.93147 0.88754 0.96537 0.90993 0.91386 0.90292 0.94337 0.94578 0.94590 0.98514 0.98753 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.10 37.16 0.30 -1.44 16 2 C 0.09 1.22 1.97 -67.71 -0.13 1.09 16 3 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 4 C 0.10 1.41 2.31 -26.69 -0.06 1.34 16 5 H 0.06 0.85 6.19 -51.93 -0.32 0.53 16 6 C -0.15 -1.65 5.21 -26.59 -0.14 -1.79 16 7 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 8 C -0.16 -1.82 6.14 -26.60 -0.16 -1.98 16 9 C 0.06 0.93 6.84 37.21 0.25 1.18 16 10 O -0.35 -5.94 9.50 -35.23 -0.33 -6.28 16 11 N -0.51 -8.04 4.44 -234.89 -1.04 -9.08 16 12 C 0.02 0.32 8.57 60.07 0.52 0.84 16 13 C 0.06 0.87 5.23 -3.83 -0.02 0.85 16 14 C 0.07 1.23 6.13 37.15 0.23 1.45 16 15 O -0.36 -8.78 10.27 -35.23 -0.36 -9.14 16 16 C 0.17 4.45 4.76 36.01 0.17 4.62 16 17 C -0.51 -15.61 9.99 -34.44 -0.34 -15.95 16 18 H 0.08 2.80 8.06 -52.48 -0.42 2.38 16 19 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 20 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 21 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 25 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 26 H 0.05 0.57 6.39 -51.93 -0.33 0.23 16 27 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 28 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 38 H 0.07 0.94 6.62 -51.92 -0.34 0.60 16 39 H 0.08 1.24 5.92 -51.93 -0.31 0.93 16 40 H 0.04 0.49 8.00 -51.93 -0.42 0.07 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.64 6.69 -51.93 -0.35 0.30 16 43 H 0.00 -0.07 7.20 -51.93 -0.37 -0.45 16 44 H -0.01 -0.14 7.57 -51.93 -0.39 -0.53 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -33.46 342.40 -8.17 -41.63 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -8.05 Total: -2.92 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 0.35 Total: -9.18 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.27 Total: -36.63 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.70 Total: -15.41 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.46 -8.17 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706035020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.845 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds