Wall clock time and date at job start Mon Mar 30 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.53000 * 109.47144 * 240.00401 * 2 1 3 5 5 H 1.09006 * 109.47941 * 183.93743 * 4 2 1 6 6 C 1.53087 * 109.48376 * 63.91272 * 4 2 1 7 7 C 1.53181 * 109.16300 * 182.42199 * 6 4 2 8 8 C 1.53169 * 109.04692 * 56.96321 * 7 6 4 9 9 C 1.53094 * 109.16475 * 303.02403 * 8 7 6 10 10 O 1.42904 * 109.47811 * 303.95727 * 4 2 1 11 11 N 1.46900 * 109.47642 * 120.00017 * 2 1 3 12 12 C 1.46903 * 110.99539 * 311.58732 * 11 2 1 13 13 C 1.46901 * 111.00524 * 187.63502 * 11 2 1 14 14 C 1.52991 * 109.47086 * 199.82177 * 13 11 2 15 15 O 1.42902 * 109.47382 * 64.99721 * 14 13 11 16 16 C 1.42901 * 113.99918 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.46936 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00142 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00281 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99916 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46900 * 89.99797 * 21 19 17 23 23 H 1.48498 * 109.47353 * 210.00072 * 21 19 17 24 24 H 1.48506 * 109.47053 * 330.00164 * 21 19 17 25 25 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46809 * 299.99777 * 1 2 3 27 27 H 1.08997 * 109.47108 * 60.00443 * 1 2 3 28 28 H 1.08994 * 109.52098 * 302.31639 * 6 4 2 29 29 H 1.09000 * 109.52049 * 62.50623 * 6 4 2 30 30 H 1.09000 * 109.53174 * 297.09825 * 7 6 4 31 31 H 1.08997 * 109.61481 * 176.88310 * 7 6 4 32 32 H 1.09007 * 109.52587 * 183.12269 * 8 7 6 33 33 H 1.08996 * 109.52487 * 62.93316 * 8 7 6 34 34 H 1.08997 * 109.48275 * 297.62963 * 9 8 7 35 35 H 1.08997 * 109.48493 * 177.58615 * 9 8 7 36 36 H 1.09002 * 109.47455 * 303.47403 * 12 11 2 37 37 H 1.08996 * 109.47396 * 63.47664 * 12 11 2 38 38 H 1.09009 * 109.46838 * 183.47471 * 12 11 2 39 39 H 1.09000 * 109.46649 * 319.82180 * 13 11 2 40 40 H 1.08994 * 109.47231 * 79.81538 * 13 11 2 41 41 H 1.08999 * 109.47220 * 184.99937 * 14 13 11 42 42 H 1.09001 * 109.47067 * 304.99570 * 14 13 11 43 43 H 1.08996 * 109.47135 * 299.99673 * 16 15 14 44 44 H 1.09000 * 109.47223 * 60.00296 * 16 15 14 45 45 H 0.96993 * 120.00426 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1278 -0.7828 -1.2148 6 6 1.6119 0.0550 -2.4974 7 6 2.0737 -0.7046 -3.7449 8 6 1.4907 -2.1207 -3.7123 9 6 1.9238 -2.8127 -2.4172 10 8 1.4893 -2.0390 -1.2969 11 7 2.0198 -0.6925 1.1994 12 6 1.3370 -0.2040 2.4049 13 6 3.4768 -0.5563 1.3279 14 6 4.0118 -1.6515 2.2526 15 8 3.8034 -2.9294 1.6478 16 6 4.2706 -4.0275 2.4338 17 6 4.0006 -5.3183 1.7042 18 1 3.5206 -5.3016 0.7369 19 6 4.3673 -6.5204 2.2712 20 7 4.1321 -7.6467 1.6343 21 14 5.1981 -6.5492 3.9440 22 1 4.1662 -6.6462 5.0075 23 1 6.1052 -7.7220 4.0261 24 1 5.9832 -5.3022 4.1284 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.5264 0.1521 -2.5114 29 1 2.0671 1.0453 -2.4845 30 1 3.1623 -0.7587 -3.7565 31 1 1.7247 -0.1871 -4.6385 32 1 1.8592 -2.6862 -4.5682 33 1 0.4027 -2.0677 -3.7507 34 1 3.0100 -2.9017 -2.3982 35 1 1.4767 -3.8056 -2.3684 36 1 1.4691 0.8750 2.4853 37 1 0.2741 -0.4361 2.3397 38 1 1.7614 -0.6885 3.2843 39 1 3.9388 -0.6526 0.3454 40 1 3.7148 0.4213 1.7470 41 1 5.0780 -1.4978 2.4190 42 1 3.4856 -1.6108 3.2064 43 1 5.3422 -3.9230 2.6035 44 1 3.7502 -4.0363 3.3916 45 1 4.3897 -8.4924 2.0333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706035020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:14 Heat of formation + Delta-G solvation = -114.581471 kcal Electronic energy + Delta-G solvation = -22484.379022 eV Core-core repulsion = 19308.083760 eV Total energy + Delta-G solvation = -3176.295262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74410 -39.04048 -37.82303 -34.87600 -34.44229 -33.59065 -31.40120 -29.98292 -28.83100 -27.47813 -25.55991 -24.30285 -23.92429 -22.69004 -21.40793 -20.58571 -19.01757 -17.50931 -17.43190 -17.19157 -16.76299 -16.32299 -16.07785 -15.92315 -15.52648 -15.26036 -14.91056 -14.65161 -14.41946 -13.96225 -13.84685 -13.62034 -13.46739 -13.18767 -13.02461 -12.85386 -12.70541 -12.52486 -12.38549 -12.20437 -12.01150 -11.82272 -11.77394 -11.70737 -11.42220 -11.26581 -10.97415 -10.89060 -10.24716 -10.16875 -9.00723 -8.34999 -6.41732 1.31998 1.35721 1.46486 2.30314 2.88271 2.97130 3.02887 3.19127 3.76404 3.94080 3.96958 4.02468 4.12884 4.16359 4.27531 4.34324 4.39957 4.43815 4.50253 4.54944 4.55162 4.67586 4.68488 4.70903 4.74690 4.82662 4.91445 4.97740 5.00695 5.00964 5.06549 5.10612 5.11998 5.15679 5.21441 5.39324 5.47344 5.50210 5.98485 6.24191 6.29601 6.55879 6.62323 6.86733 7.22858 8.82544 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005277 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.302359 B = 5304.415325 C = 6330.105924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.092 3.908 3 H 0.070 0.930 4 C 0.093 3.907 5 H 0.038 0.962 6 C -0.144 4.144 7 C -0.120 4.120 8 C -0.146 4.146 9 C 0.056 3.944 10 O -0.379 6.379 11 N -0.551 5.551 12 C 0.026 3.974 13 C 0.063 3.937 14 C 0.056 3.944 15 O -0.388 6.388 16 C 0.180 3.820 17 C -0.538 4.538 18 H 0.026 0.974 19 C 0.012 3.988 20 N -0.944 5.944 21 Si 0.956 3.044 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.247 1.247 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.008 0.992 44 H 0.003 0.997 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 21.432 -4.918 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 H 0.088 0.912 4 C 0.035 3.965 5 H 0.055 0.945 6 C -0.182 4.182 7 C -0.157 4.157 8 C -0.184 4.184 9 C -0.021 4.021 10 O -0.298 6.298 11 N -0.276 5.276 12 C -0.121 4.121 13 C -0.064 4.064 14 C -0.022 4.022 15 O -0.307 6.307 16 C 0.104 3.896 17 C -0.575 4.575 18 H 0.044 0.956 19 C -0.185 4.185 20 N -0.583 5.583 21 Si 0.777 3.223 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.170 1.170 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.021 0.979 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.818 20.657 -5.004 21.794 hybrid contribution 0.860 -0.059 0.613 1.057 sum -3.959 20.598 -4.392 21.430 Atomic orbital electron populations 1.21834 0.93163 1.01988 1.02552 1.21699 0.96886 0.94551 0.88413 0.91220 1.22248 0.95955 0.83293 0.94998 0.94456 1.22236 1.02748 0.99502 0.93704 1.21590 1.00457 0.95069 0.98588 1.22134 1.01826 0.97302 0.97139 1.22530 0.97918 0.94923 0.86758 1.88045 1.69827 1.25847 1.46079 1.61721 1.04248 1.58466 1.03139 1.22447 0.99854 0.97935 0.91884 1.22119 0.88393 0.95926 1.00000 1.22662 0.98611 0.84584 0.96300 1.88014 1.82833 1.14010 1.45861 1.20250 0.93034 0.85254 0.91027 1.21131 1.40150 0.90835 1.05425 0.95583 1.25838 0.95897 0.94196 1.02617 1.70038 1.48765 0.98556 1.40972 0.85601 0.79223 0.79146 0.78281 1.18547 1.19640 1.17034 0.93675 0.91387 0.90489 0.90180 0.89173 0.92350 0.89315 0.89998 0.90868 0.95244 0.90634 0.93835 0.91021 0.92420 0.91252 0.90671 0.92922 0.93758 0.97449 0.97934 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.10 71.98 0.58 -2.53 16 2 C 0.09 2.30 1.97 44.92 0.09 2.39 16 3 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 4 C 0.09 2.60 2.31 30.62 0.07 2.67 16 5 H 0.04 1.16 6.19 -2.38 -0.01 1.15 16 6 C -0.14 -2.83 5.21 30.68 0.16 -2.68 16 7 C -0.12 -2.31 6.03 30.71 0.19 -2.13 16 8 C -0.15 -3.40 6.14 30.68 0.19 -3.21 16 9 C 0.06 1.84 6.84 72.01 0.49 2.34 16 10 O -0.38 -13.78 9.50 -148.98 -1.42 -15.20 16 11 N -0.55 -16.77 4.44 -897.05 -3.98 -20.75 16 12 C 0.03 0.65 8.57 127.69 1.09 1.75 16 13 C 0.06 1.86 5.23 86.30 0.45 2.32 16 14 C 0.06 2.01 6.13 71.98 0.44 2.46 16 15 O -0.39 -19.48 10.27 -148.98 -1.53 -21.01 16 16 C 0.18 9.64 4.76 71.24 0.34 9.98 16 17 C -0.54 -34.48 9.99 25.60 0.26 -34.22 16 18 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 19 C 0.01 0.74 5.47 84.65 0.46 1.20 16 20 N -0.94 -61.34 13.96 21.45 0.30 -61.04 16 21 Si 0.96 45.12 27.47 68.60 1.88 47.00 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 25 H 0.04 1.31 7.58 -2.39 -0.02 1.29 16 26 H 0.07 1.30 6.39 -2.39 -0.02 1.29 16 27 H 0.08 1.39 6.48 -2.39 -0.02 1.37 16 28 H 0.08 1.49 6.43 -2.39 -0.02 1.48 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.74 6.43 -2.39 -0.02 1.72 16 38 H 0.06 1.52 6.62 -2.38 -0.02 1.50 16 39 H 0.07 2.16 5.92 -2.39 -0.01 2.14 16 40 H 0.08 1.66 8.00 -2.39 -0.02 1.64 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.52 6.69 -2.39 -0.02 1.51 16 43 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 44 H 0.00 0.15 7.57 -2.39 -0.02 0.13 16 45 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -76.77 342.40 0.95 -75.82 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.88 Total: 14.85 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.81 Total: -19.67 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.68 Total: -81.79 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -2.95 Total: -36.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -76.77 0.95 -75.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706035020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.765 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds