Wall clock time and date at job start Mon Mar 30 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48499 * 109.46643 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47031 * 299.99812 * 3 2 1 6 6 H 1.48504 * 109.46887 * 59.99892 * 3 2 1 7 7 C 1.38650 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99572 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00669 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00359 * 185.06219 * 9 7 2 11 11 C 1.38905 * 120.06284 * 354.39668 * 10 9 7 12 12 C 1.38077 * 119.95301 * 180.02562 * 11 10 9 13 13 C 1.38311 * 120.07858 * 0.02581 * 12 11 10 14 14 C 1.38370 * 120.12406 * 359.97438 * 13 12 11 15 15 Br 1.89107 * 119.97206 * 179.97438 * 14 13 12 16 16 C 1.38204 * 120.05403 * 359.97438 * 14 13 12 17 17 C 1.50694 * 120.04568 * 179.70618 * 16 14 13 18 18 O 1.42900 * 109.47494 * 89.99833 * 17 16 14 19 19 H 0.97003 * 119.99722 * 0.02562 * 1 2 3 20 20 H 1.08003 * 120.02461 * 0.02562 * 11 10 9 21 21 H 1.08003 * 119.96710 * 180.02562 * 12 11 10 22 22 H 1.07998 * 119.93900 * 179.97438 * 13 12 11 23 23 H 1.08998 * 109.47756 * 210.00552 * 17 16 14 24 24 H 1.09005 * 109.46581 * 329.99913 * 17 16 14 25 25 H 0.96699 * 114.00149 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 3.4574 -3.4395 0.0940 12 6 4.2029 -4.5965 0.2028 13 6 3.5699 -5.8202 0.3248 14 6 2.1880 -5.8888 0.3389 15 35 1.3269 -7.5642 0.5052 16 6 1.4365 -4.7339 0.2315 17 6 -0.0685 -4.8095 0.2401 18 8 -0.5429 -4.7077 1.5843 19 1 -0.4850 0.8401 -0.0004 20 1 3.9526 -2.4845 -0.0016 21 1 5.2817 -4.5461 0.1925 22 1 4.1553 -6.7238 0.4093 23 1 -0.4770 -3.9908 -0.3523 24 1 -0.3869 -5.7607 -0.1865 25 1 -1.5056 -4.7493 1.6658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706635921.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:06 Heat of formation + Delta-G solvation = -71.358988 kcal Electronic energy + Delta-G solvation = -13423.801011 eV Core-core repulsion = 10834.610455 eV Total energy + Delta-G solvation = -2589.190556 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.983 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04558 -38.48328 -37.41677 -34.35373 -33.31704 -31.79444 -29.84264 -27.51447 -26.71556 -23.20613 -22.37928 -19.78936 -18.76867 -18.38286 -17.03585 -16.69118 -16.13909 -15.61160 -15.36102 -14.97470 -14.66908 -14.33274 -13.61704 -13.60124 -13.12449 -12.76384 -12.49127 -12.31495 -12.10247 -11.63730 -11.44542 -11.19045 -10.82134 -10.72880 -9.70153 -9.11686 -8.49205 -6.17577 0.16623 0.52944 0.59558 1.36311 1.43916 1.54245 2.16312 2.62782 3.04041 3.42695 3.61325 3.99346 4.05165 4.22016 4.41743 4.49742 4.63069 4.67782 5.06299 5.09049 5.28705 5.51197 5.55756 5.93763 5.96669 6.89904 6.94728 7.70499 8.73166 Molecular weight = 271.98amu Principal moments of inertia in cm(-1) A = 0.039622 B = 0.006130 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.505010 B = 4566.760779 C = 5189.674796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.018 4.018 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.417 4.417 8 H 0.106 0.894 9 O -0.213 6.213 10 C 0.134 3.866 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.171 4.171 14 C -0.035 4.035 15 Br -0.035 7.035 16 C -0.163 4.163 17 C 0.134 3.866 18 O -0.577 6.577 19 H 0.273 0.727 20 H 0.133 0.867 21 H 0.164 0.836 22 H 0.157 0.843 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -12.301 0.041 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.493 4.493 8 H 0.123 0.877 9 O -0.118 6.118 10 C 0.081 3.919 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.191 4.191 14 C -0.115 4.115 15 Br 0.051 6.949 16 C -0.166 4.166 17 C 0.056 3.944 18 O -0.385 6.385 19 H 0.082 0.918 20 H 0.150 0.850 21 H 0.182 0.818 22 H 0.175 0.825 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.806 -12.715 0.199 13.595 hybrid contribution -0.444 1.284 -0.202 1.373 sum 4.363 -11.432 -0.004 12.236 Atomic orbital electron populations 1.70192 1.08014 1.28810 1.48055 1.26578 0.96835 1.02656 0.95591 0.84527 0.78422 0.74791 0.78467 1.17199 1.19322 1.19608 1.21927 0.92706 0.81211 1.53458 0.87704 1.83957 1.35554 1.12204 1.80116 1.19547 0.91528 0.87389 0.93407 1.21499 0.92748 1.00918 1.10073 1.21251 1.00983 0.90325 0.94674 1.21084 0.91437 0.99483 1.07092 1.21511 0.95324 0.90177 1.04465 1.96536 1.80447 1.20997 1.96946 1.18815 0.95592 0.90384 1.11814 1.20676 0.89836 0.99831 0.84041 1.86518 1.27960 1.97131 1.26857 0.91784 0.84965 0.81829 0.82538 0.95005 0.90641 0.76040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.87 13.67 21.61 0.30 -54.57 15 2 C -0.02 -1.01 5.49 84.83 0.47 -0.54 15 3 Si 1.02 41.78 29.55 68.60 2.03 43.81 15 4 H -0.25 -9.33 7.11 99.48 0.71 -8.63 15 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 7 C -0.42 -23.64 9.49 67.92 0.64 -23.00 15 8 H 0.11 5.39 5.20 -2.91 -0.02 5.38 15 9 O -0.21 -12.51 8.80 -22.71 -0.20 -12.71 15 10 C 0.13 6.63 6.62 22.57 0.15 6.78 15 11 C -0.23 -9.75 9.17 22.39 0.21 -9.55 15 12 C -0.05 -1.74 10.04 22.25 0.22 -1.51 15 13 C -0.17 -5.38 9.79 22.32 0.22 -5.16 15 14 C -0.04 -1.28 6.22 22.29 0.14 -1.14 15 15 Br -0.03 -1.02 31.78 -20.37 -0.65 -1.66 15 16 C -0.16 -7.14 5.53 -19.73 -0.11 -7.25 15 17 C 0.13 5.50 6.49 71.23 0.46 5.97 15 18 O -0.58 -23.36 13.64 -148.98 -2.03 -25.39 15 19 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 20 H 0.13 5.47 5.64 -2.91 -0.02 5.46 15 21 H 0.16 3.82 8.06 -2.91 -0.02 3.80 15 22 H 0.16 3.79 8.06 -2.91 -0.02 3.76 15 23 H 0.03 1.48 7.53 -2.39 -0.02 1.46 15 24 H 0.08 2.61 6.65 -2.38 -0.02 2.60 15 25 H 0.39 11.51 9.12 -74.06 -0.68 10.84 15 Total: -1.00 -69.38 246.17 2.40 -66.98 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.56 Total: 18.96 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 2.40 Total: -35.42 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.30 Total: -54.57 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -2.23 Total: -38.10 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.65 Total: -1.66 kcal Total: -69.38 2.40 -66.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706635921.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.379 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds