Wall clock time and date at job start Mon Mar 30 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.53002 * 109.46802 * 120.00344 * 2 1 3 5 5 N 1.46908 * 109.46968 * 294.99569 * 4 2 1 6 6 C 1.46898 * 110.99710 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46732 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46797 * 65.00049 * 7 6 5 9 9 C 1.42904 * 113.99649 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99728 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00280 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99694 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99989 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47012 * 60.00593 * 14 12 10 16 16 H 1.48503 * 109.46835 * 180.02562 * 14 12 10 17 17 H 1.48489 * 109.47196 * 299.99978 * 14 12 10 18 18 C 1.53005 * 109.46808 * 239.99630 * 2 1 3 19 19 H 1.08999 * 109.48219 * 300.02645 * 18 2 1 20 20 C 1.53093 * 109.47794 * 60.06463 * 18 2 1 21 21 C 1.53180 * 109.16207 * 177.58907 * 20 18 2 22 22 C 1.53180 * 109.03380 * 303.01706 * 21 20 18 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 21 20 24 24 O 1.42905 * 109.47459 * 180.02562 * 18 2 1 25 25 H 1.08998 * 109.46687 * 300.00388 * 1 2 3 26 26 H 1.09001 * 109.46418 * 59.99933 * 1 2 3 27 27 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47152 * 54.99681 * 4 2 1 29 29 H 1.08997 * 109.47293 * 174.99709 * 4 2 1 30 30 H 1.00897 * 110.99801 * 303.95501 * 5 4 2 31 31 H 1.08995 * 109.47459 * 299.99583 * 6 5 4 32 32 H 1.08994 * 109.46964 * 60.00357 * 6 5 4 33 33 H 1.08996 * 109.47125 * 185.00012 * 7 6 5 34 34 H 1.09004 * 109.47464 * 305.00402 * 7 6 5 35 35 H 1.09001 * 109.47611 * 299.99978 * 9 8 7 36 36 H 1.08999 * 109.46961 * 60.00454 * 9 8 7 37 37 H 0.97001 * 119.99950 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.52171 * 297.49519 * 20 18 2 39 39 H 1.08994 * 109.52452 * 57.68283 * 20 18 2 40 40 H 1.08996 * 109.54290 * 62.88145 * 21 20 18 41 41 H 1.08991 * 109.54625 * 183.06245 * 21 20 18 42 42 H 1.09001 * 109.52400 * 297.07495 * 22 21 20 43 43 H 1.09004 * 109.52264 * 176.88591 * 22 21 20 44 44 H 1.09005 * 109.47867 * 182.40583 * 23 22 21 45 45 H 1.09001 * 109.48124 * 62.37304 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4457 6 6 2.1257 -0.6266 3.6672 7 6 1.7034 0.1915 4.8892 8 8 0.2780 0.1955 4.9902 9 6 -0.2236 0.9358 6.1049 10 6 -1.7293 0.8733 6.1129 11 1 -2.2510 0.3229 5.3439 12 6 -2.4409 1.5187 7.1019 13 7 -1.8056 2.1893 8.0380 14 14 -4.3072 1.4405 7.1122 15 1 -4.7428 0.0252 7.2225 16 1 -4.8285 2.2110 8.2698 17 1 -4.8340 2.0239 5.8524 18 6 2.0400 -0.7214 -1.2493 19 1 1.6763 -1.7489 -1.2496 20 6 1.5311 0.0011 -2.4994 21 6 2.0947 -0.6908 -3.7444 22 6 3.6242 -0.7009 -3.6610 23 6 4.0523 -1.3962 -2.3660 24 8 3.4690 -0.7220 -1.2491 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2951 29 1 3.1263 -0.7997 1.2056 30 1 1.9882 0.9872 2.3967 31 1 1.6920 -1.6246 3.7301 32 1 3.2126 -0.7038 3.6400 33 1 2.1301 -0.2522 5.7886 34 1 2.0630 1.2150 4.7832 35 1 0.1631 0.5071 7.0295 36 1 0.0961 1.9748 6.0245 37 1 -2.3062 2.6431 8.7340 38 1 0.4420 -0.0361 -2.5236 39 1 1.8606 1.0398 -2.4793 40 1 1.7253 -1.7152 -3.7909 41 1 1.7805 -0.1490 -4.6364 42 1 3.9960 0.3237 -3.6644 43 1 4.0320 -1.2402 -4.5160 44 1 5.1386 -1.3686 -2.2805 45 1 3.7149 -2.4326 -2.3812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712002101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:42 Heat of formation + Delta-G solvation = -119.203229 kcal Electronic energy + Delta-G solvation = -21053.661583 eV Core-core repulsion = 17877.165906 eV Total energy + Delta-G solvation = -3176.495677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85482 -37.28791 -36.11306 -33.98958 -33.71757 -32.54893 -30.14146 -28.49492 -26.73336 -25.50064 -24.76552 -23.18773 -22.22306 -21.44431 -20.49915 -20.18305 -16.63205 -16.40179 -16.34321 -15.81306 -15.22817 -15.07904 -14.83687 -14.64913 -14.47389 -14.15823 -13.86984 -13.36291 -13.13802 -12.93886 -12.70144 -12.45913 -12.11521 -11.78300 -11.65511 -11.44714 -11.39650 -11.25452 -11.04340 -10.87008 -10.76528 -10.69591 -10.64722 -10.42792 -10.24117 -9.91338 -9.59189 -9.02461 -8.72645 -8.08234 -8.01715 -6.03885 -4.04656 3.37211 3.39202 3.43714 3.54778 4.21536 4.41311 4.49865 4.57392 4.61486 4.68666 4.90514 4.97505 5.03661 5.13514 5.18185 5.29312 5.32418 5.38606 5.43561 5.50900 5.59411 5.63814 5.64929 5.70408 5.73975 5.82552 5.86657 5.96588 6.01370 6.09138 6.12569 6.17407 6.32322 6.40234 6.53631 7.06840 7.18783 7.31300 7.51973 7.67901 7.87919 8.24890 8.70572 9.10168 9.59875 11.07839 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002913 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.751131 B = 9611.421044 C =10327.513491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 H 0.075 0.925 4 C 0.067 3.933 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.065 3.935 8 O -0.380 6.380 9 C 0.194 3.806 10 C -0.510 4.510 11 H 0.066 0.934 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.908 3.092 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.096 3.904 19 H 0.057 0.943 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.061 3.939 24 O -0.378 6.378 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.338 0.662 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -6.189 -22.473 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.093 0.907 4 C -0.062 4.062 5 N -0.306 5.306 6 C -0.063 4.063 7 C -0.013 4.013 8 O -0.299 6.299 9 C 0.119 3.881 10 C -0.548 4.548 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.735 3.265 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.200 1.200 18 C 0.038 3.962 19 H 0.075 0.925 20 C -0.189 4.189 21 C -0.161 4.161 22 C -0.194 4.194 23 C -0.016 4.016 24 O -0.297 6.297 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.155 0.845 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.905 -6.372 -22.244 25.580 hybrid contribution 0.131 0.256 0.021 0.288 sum 11.036 -6.116 -22.223 25.555 Atomic orbital electron populations 1.21784 0.93177 1.02141 1.02667 1.21118 0.96735 0.99697 0.92140 0.90693 1.21915 0.97574 0.97531 0.89229 1.60327 1.64275 1.05246 1.00762 1.21950 0.95905 0.99059 0.89376 1.22233 0.85898 0.97693 0.95457 1.87953 1.16465 1.74672 1.50854 1.20171 0.94567 0.90090 0.83249 1.21036 0.90446 1.32092 1.11249 0.91569 1.24952 0.99299 0.95182 0.95188 1.69958 1.35907 1.33748 1.14449 0.86401 0.84408 0.78211 0.77476 1.20065 1.21256 1.20012 1.22173 0.80730 0.98601 0.94736 0.92483 1.22253 1.01481 1.00577 0.94550 1.21597 0.95247 1.00982 0.98254 1.22195 0.96643 1.02120 0.98483 1.22527 0.98346 0.94969 0.85755 1.87947 1.19728 1.77419 1.44608 0.89962 0.93236 0.92940 0.91473 0.94903 0.84462 0.90562 0.94996 0.94320 0.94835 0.98063 0.97929 0.92714 0.90345 0.91045 0.91934 0.91570 0.91105 0.91149 0.89124 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.73 37.16 0.32 -1.33 16 2 C -0.08 -0.89 2.33 -90.61 -0.21 -1.10 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.07 0.86 5.00 -3.82 -0.02 0.84 16 5 N -0.67 -10.33 5.90 -113.78 -0.67 -11.00 16 6 C 0.07 1.04 6.07 -3.82 -0.02 1.02 16 7 C 0.07 1.26 6.22 37.16 0.23 1.49 16 8 O -0.38 -9.51 10.27 -35.23 -0.36 -9.87 16 9 C 0.19 5.49 5.69 36.01 0.20 5.69 16 10 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 11 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 14 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.10 0.96 2.22 -26.68 -0.06 0.91 16 19 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 20 C -0.15 -1.30 4.99 -26.59 -0.13 -1.43 16 21 C -0.12 -0.89 6.03 -26.54 -0.16 -1.05 16 22 C -0.16 -1.10 6.14 -26.59 -0.16 -1.26 16 23 C 0.06 0.49 6.84 37.21 0.25 0.75 16 24 O -0.38 -4.14 9.65 -35.23 -0.34 -4.48 16 25 H 0.08 1.19 7.75 -51.93 -0.40 0.78 16 26 H 0.05 0.50 6.49 -51.93 -0.34 0.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.43 7.54 -51.93 -0.39 0.04 16 30 H 0.34 4.93 8.73 -39.29 -0.34 4.59 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.08 0.64 6.57 -51.93 -0.34 0.29 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -32.17 356.73 -9.01 -41.18 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.55 Total: -1.97 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.18 Total: -9.73 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.06 Total: -37.80 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.70 Total: -14.35 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.17 -9.01 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712002101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.024 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds