Wall clock time and date at job start Mon Mar 30 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.53002 * 109.46802 * 120.00344 * 2 1 3 5 5 N 1.46908 * 109.46968 * 294.99569 * 4 2 1 6 6 C 1.46898 * 110.99710 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46732 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46797 * 65.00049 * 7 6 5 9 9 C 1.42904 * 113.99649 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99728 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00280 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99694 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99989 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47012 * 60.00593 * 14 12 10 16 16 H 1.48503 * 109.46835 * 180.02562 * 14 12 10 17 17 H 1.48489 * 109.47196 * 299.99978 * 14 12 10 18 18 C 1.53005 * 109.46808 * 239.99630 * 2 1 3 19 19 H 1.08999 * 109.48219 * 300.02645 * 18 2 1 20 20 C 1.53093 * 109.47794 * 60.06463 * 18 2 1 21 21 C 1.53180 * 109.16207 * 177.58907 * 20 18 2 22 22 C 1.53180 * 109.03380 * 303.01706 * 21 20 18 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 21 20 24 24 O 1.42905 * 109.47459 * 180.02562 * 18 2 1 25 25 H 1.08998 * 109.46687 * 300.00388 * 1 2 3 26 26 H 1.09001 * 109.46418 * 59.99933 * 1 2 3 27 27 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47152 * 54.99681 * 4 2 1 29 29 H 1.08997 * 109.47293 * 174.99709 * 4 2 1 30 30 H 1.00897 * 110.99801 * 303.95501 * 5 4 2 31 31 H 1.08995 * 109.47459 * 299.99583 * 6 5 4 32 32 H 1.08994 * 109.46964 * 60.00357 * 6 5 4 33 33 H 1.08996 * 109.47125 * 185.00012 * 7 6 5 34 34 H 1.09004 * 109.47464 * 305.00402 * 7 6 5 35 35 H 1.09001 * 109.47611 * 299.99978 * 9 8 7 36 36 H 1.08999 * 109.46961 * 60.00454 * 9 8 7 37 37 H 0.97001 * 119.99950 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.52171 * 297.49519 * 20 18 2 39 39 H 1.08994 * 109.52452 * 57.68283 * 20 18 2 40 40 H 1.08996 * 109.54290 * 62.88145 * 21 20 18 41 41 H 1.08991 * 109.54625 * 183.06245 * 21 20 18 42 42 H 1.09001 * 109.52400 * 297.07495 * 22 21 20 43 43 H 1.09004 * 109.52264 * 176.88591 * 22 21 20 44 44 H 1.09005 * 109.47867 * 182.40583 * 23 22 21 45 45 H 1.09001 * 109.48124 * 62.37304 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4457 6 6 2.1257 -0.6266 3.6672 7 6 1.7034 0.1915 4.8892 8 8 0.2780 0.1955 4.9902 9 6 -0.2236 0.9358 6.1049 10 6 -1.7293 0.8733 6.1129 11 1 -2.2510 0.3229 5.3439 12 6 -2.4409 1.5187 7.1019 13 7 -1.8056 2.1893 8.0380 14 14 -4.3072 1.4405 7.1122 15 1 -4.7428 0.0252 7.2225 16 1 -4.8285 2.2110 8.2698 17 1 -4.8340 2.0239 5.8524 18 6 2.0400 -0.7214 -1.2493 19 1 1.6763 -1.7489 -1.2496 20 6 1.5311 0.0011 -2.4994 21 6 2.0947 -0.6908 -3.7444 22 6 3.6242 -0.7009 -3.6610 23 6 4.0523 -1.3962 -2.3660 24 8 3.4690 -0.7220 -1.2491 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2951 29 1 3.1263 -0.7997 1.2056 30 1 1.9882 0.9872 2.3967 31 1 1.6920 -1.6246 3.7301 32 1 3.2126 -0.7038 3.6400 33 1 2.1301 -0.2522 5.7886 34 1 2.0630 1.2150 4.7832 35 1 0.1631 0.5071 7.0295 36 1 0.0961 1.9748 6.0245 37 1 -2.3062 2.6431 8.7340 38 1 0.4420 -0.0361 -2.5236 39 1 1.8606 1.0398 -2.4793 40 1 1.7253 -1.7152 -3.7909 41 1 1.7805 -0.1490 -4.6364 42 1 3.9960 0.3237 -3.6644 43 1 4.0320 -1.2402 -4.5160 44 1 5.1386 -1.3686 -2.2805 45 1 3.7149 -2.4326 -2.3812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712002101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:42 Heat of formation + Delta-G solvation = -140.649876 kcal Electronic energy + Delta-G solvation = -21054.591579 eV Core-core repulsion = 17877.165906 eV Total energy + Delta-G solvation = -3177.425673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60067 -38.85197 -37.48856 -35.18275 -34.66656 -34.42090 -31.14591 -29.91804 -28.63717 -26.52700 -25.51112 -24.47473 -24.01460 -22.83593 -21.15897 -21.12082 -18.60770 -17.59613 -17.37563 -17.14574 -16.69974 -16.54695 -16.02174 -15.76555 -15.49127 -15.34256 -14.99459 -14.80175 -14.31046 -13.99131 -13.78707 -13.64420 -13.43483 -13.15620 -12.98485 -12.84786 -12.59648 -12.55690 -12.28903 -12.16859 -12.06372 -11.95635 -11.78063 -11.60202 -11.41822 -11.25317 -11.05329 -10.83888 -10.31399 -10.17263 -9.21489 -8.30138 -6.42140 1.40519 1.45894 1.54162 2.36610 2.82591 3.03316 3.16136 3.26814 3.78914 3.89698 3.95629 4.01357 4.11574 4.23562 4.25591 4.30727 4.35759 4.38883 4.52968 4.57514 4.66959 4.68462 4.74926 4.81809 4.84836 4.85354 4.94620 4.96082 5.00251 5.08542 5.09416 5.15008 5.20782 5.25937 5.32430 5.43499 5.52287 5.57154 5.99259 6.13535 6.35208 6.49144 6.59804 6.88113 7.29973 8.82126 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002913 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.751131 B = 9611.421044 C =10327.513491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 H 0.069 0.931 4 C 0.074 3.926 5 N -0.693 5.693 6 C 0.076 3.924 7 C 0.056 3.944 8 O -0.395 6.395 9 C 0.208 3.792 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.984 3.016 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.265 1.265 18 C 0.099 3.901 19 H 0.059 0.941 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.154 4.154 23 C 0.054 3.946 24 O -0.400 6.400 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.340 0.660 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.039 0.961 35 H -0.017 1.017 36 H -0.017 1.017 37 H 0.270 0.730 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -6.783 -23.968 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.055 4.055 5 N -0.325 5.325 6 C -0.053 4.053 7 C -0.021 4.021 8 O -0.315 6.315 9 C 0.133 3.867 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.571 5.571 14 Si 0.806 3.194 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.190 1.190 18 C 0.041 3.959 19 H 0.077 0.923 20 C -0.187 4.187 21 C -0.160 4.160 22 C -0.191 4.191 23 C -0.023 4.023 24 O -0.319 6.319 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.158 0.842 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.551 -6.975 -23.757 26.914 hybrid contribution 0.370 0.436 0.474 0.743 sum 10.921 -6.540 -23.282 26.535 Atomic orbital electron populations 1.21698 0.93506 1.01966 1.02009 1.21053 0.96380 0.99431 0.92361 0.91269 1.21881 0.97651 0.97143 0.88824 1.60312 1.65008 1.05727 1.01437 1.21847 0.97545 0.97840 0.88074 1.22582 0.82851 0.98969 0.97737 1.87910 1.20105 1.74058 1.49417 1.19797 0.94200 0.89109 0.83574 1.21359 0.91603 1.33349 1.12052 0.92158 1.25980 1.05130 0.94027 0.94211 1.70068 1.38307 1.33867 1.14900 0.85231 0.77168 0.78840 0.78152 1.19000 1.19917 1.18999 1.22090 0.80727 0.98573 0.94476 0.92309 1.22231 1.01786 1.00126 0.94566 1.21616 0.95356 1.01258 0.97806 1.22177 0.96521 1.01885 0.98550 1.22730 0.98859 0.95209 0.85469 1.87906 1.19964 1.77995 1.46078 0.92922 0.91513 0.92846 0.91849 0.94636 0.84201 0.91103 0.91866 0.93465 0.94296 0.99907 0.99938 0.92074 0.89861 0.91747 0.91374 0.90559 0.91741 0.89330 0.88155 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.73 71.98 0.63 -2.50 16 2 C -0.07 -1.64 2.33 -10.79 -0.03 -1.66 16 3 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.07 1.86 5.00 86.30 0.43 2.29 16 5 N -0.69 -21.08 5.90 -513.88 -3.03 -24.12 16 6 C 0.08 2.34 6.07 86.30 0.52 2.87 16 7 C 0.06 2.16 6.22 71.98 0.45 2.61 16 8 O -0.40 -20.24 10.27 -148.98 -1.53 -21.77 16 9 C 0.21 12.18 5.69 71.24 0.41 12.59 16 10 C -0.55 -33.65 9.43 25.60 0.24 -33.41 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 12 C 0.00 0.28 5.46 84.66 0.46 0.74 16 13 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 14 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 C 0.10 1.89 2.22 30.63 0.07 1.96 16 19 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 20 C -0.15 -2.35 4.99 30.69 0.15 -2.20 16 21 C -0.12 -1.52 6.03 30.71 0.19 -1.34 16 22 C -0.15 -1.84 6.14 30.69 0.19 -1.65 16 23 C 0.05 0.78 6.84 72.01 0.49 1.27 16 24 O -0.40 -8.28 9.65 -148.98 -1.44 -9.71 16 25 H 0.05 1.54 7.75 -2.39 -0.02 1.53 16 26 H 0.07 1.29 6.49 -2.39 -0.02 1.28 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 0.88 7.54 -2.39 -0.02 0.87 16 30 H 0.34 9.93 8.73 -89.70 -0.78 9.15 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.08 1.21 6.57 -2.39 -0.02 1.19 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -69.03 356.73 0.66 -68.37 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.15 Total: 15.27 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.20 Total: -18.45 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.75 Total: -81.16 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -2.97 Total: -31.48 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.03 0.66 -68.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712002101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.282 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds