Wall clock time and date at job start Mon Mar 30 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47491 * 2 1 4 4 C 1.53001 * 109.47391 * 120.00387 * 2 1 3 5 5 N 1.46908 * 109.46770 * 294.99889 * 4 2 1 6 6 C 1.46897 * 110.99992 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47546 * 180.02562 * 6 5 4 8 8 O 1.42895 * 109.47100 * 64.99682 * 7 6 5 9 9 C 1.42900 * 114.00319 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47121 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00724 * 0.02562 * 10 9 8 12 12 C 1.37889 * 119.99645 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46989 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.46826 * 120.00307 * 14 12 10 17 17 H 1.48500 * 109.46940 * 240.00393 * 14 12 10 18 18 C 1.53004 * 109.47214 * 240.00096 * 2 1 3 19 19 H 1.09003 * 109.48230 * 184.97505 * 18 2 1 20 20 C 1.53280 * 109.46438 * 64.99038 * 18 2 1 21 21 C 1.53179 * 109.06328 * 182.44249 * 20 18 2 22 22 C 1.53177 * 109.10692 * 56.94222 * 21 20 18 23 23 C 1.53091 * 109.16264 * 302.97408 * 22 21 20 24 24 O 1.42901 * 109.47881 * 305.00177 * 18 2 1 25 25 H 1.08999 * 109.46849 * 59.99690 * 1 2 3 26 26 H 1.08997 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46750 * 300.00005 * 1 2 3 28 28 H 1.09000 * 109.46867 * 54.99404 * 4 2 1 29 29 H 1.09000 * 109.47495 * 175.00212 * 4 2 1 30 30 H 1.00898 * 110.99472 * 56.04505 * 5 4 2 31 31 H 1.09003 * 109.47436 * 300.00682 * 6 5 4 32 32 H 1.09005 * 109.47155 * 59.99964 * 6 5 4 33 33 H 1.08994 * 109.47591 * 185.00621 * 7 6 5 34 34 H 1.09000 * 109.46704 * 305.00404 * 7 6 5 35 35 H 1.08997 * 109.47424 * 300.01138 * 9 8 7 36 36 H 1.08999 * 109.46532 * 60.00559 * 9 8 7 37 37 H 0.97002 * 119.99548 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.64318 * 62.52729 * 20 18 2 39 39 H 1.09002 * 109.50809 * 302.28046 * 20 18 2 40 40 H 1.09002 * 109.54484 * 297.03018 * 21 20 18 41 41 H 1.08999 * 109.54222 * 176.85184 * 21 20 18 42 42 H 1.09004 * 109.52253 * 62.88396 * 22 21 20 43 43 H 1.08999 * 109.52129 * 183.00522 * 22 21 20 44 44 H 1.09000 * 109.47857 * 177.59315 * 23 22 21 45 45 H 1.09000 * 109.48011 * 297.61575 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6514 0.0374 2.4457 6 6 2.1248 -0.6272 3.6672 7 6 1.7015 0.1901 4.8893 8 8 0.2760 0.1941 4.9892 9 6 -0.2265 0.9336 6.1039 10 6 -1.7321 0.8699 6.1113 11 1 -2.2532 0.3194 5.3421 12 6 -2.4445 1.5145 7.1004 13 7 -1.8101 2.1853 8.0369 14 14 -4.3109 1.4350 7.1100 15 1 -4.7776 0.6232 5.9575 16 1 -4.7730 0.8095 8.3750 17 1 -4.8653 2.8086 7.0055 18 6 2.0400 -0.7212 -1.2493 19 1 3.1264 -0.7992 -1.2060 20 6 1.6342 0.0704 -2.4975 21 6 2.0958 -0.6903 -3.7444 22 6 1.4916 -2.0978 -3.7253 23 6 1.9030 -2.8038 -2.4307 24 8 1.4703 -2.0304 -1.3097 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1264 -0.7995 1.2056 30 1 0.6529 0.1792 2.4752 31 1 1.6905 -1.6250 3.7296 32 1 3.2117 -0.7051 3.6405 33 1 2.1276 -0.2540 5.7888 34 1 2.0611 1.2137 4.7841 35 1 0.1596 0.5045 7.0285 36 1 0.0931 1.9726 6.0244 37 1 -2.3113 2.6391 8.7325 38 1 2.1037 1.0540 -2.4763 39 1 0.5504 0.1836 -2.5203 40 1 3.1836 -0.7605 -3.7469 41 1 1.7624 -0.1624 -4.6378 42 1 0.4048 -2.0283 -3.7729 43 1 1.8583 -2.6632 -4.5820 44 1 1.4409 -3.7902 -2.3920 45 1 2.9876 -2.9091 -2.4030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712002122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:45 Heat of formation + Delta-G solvation = -121.825505 kcal Electronic energy + Delta-G solvation = -21149.629760 eV Core-core repulsion = 17973.020373 eV Total energy + Delta-G solvation = -3176.609387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87069 -37.34853 -36.12417 -33.85711 -33.66036 -32.57989 -30.13305 -28.40745 -26.78087 -25.91972 -24.73008 -23.22186 -22.31837 -21.25141 -20.57646 -19.86282 -16.60751 -16.44283 -16.11565 -15.87362 -15.41001 -15.15335 -15.01307 -14.75266 -14.40953 -14.10492 -13.72304 -13.45246 -13.13438 -12.96763 -12.74696 -12.53272 -11.99145 -11.87346 -11.68583 -11.57374 -11.29161 -11.27124 -10.94400 -10.84521 -10.75489 -10.66391 -10.63684 -10.50413 -10.26191 -9.95751 -9.56326 -9.06179 -8.79627 -8.13816 -8.10373 -6.08608 -4.10043 3.30798 3.37136 3.43701 3.60959 4.24883 4.37443 4.50727 4.59283 4.63010 4.71297 4.91880 4.99576 5.04949 5.09846 5.18428 5.26662 5.27929 5.36455 5.46460 5.50515 5.59096 5.65159 5.67302 5.73380 5.79309 5.82107 5.86359 5.96193 6.01682 6.08300 6.13834 6.25922 6.30609 6.41399 6.49520 7.09263 7.15009 7.32132 7.47402 7.75529 7.82092 8.18424 8.61525 9.03806 9.54757 11.03009 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.003011 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.507856 B = 9295.956004 C = 9891.918554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.690 5.690 6 C 0.066 3.934 7 C 0.062 3.938 8 O -0.399 6.399 9 C 0.197 3.803 10 C -0.513 4.513 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.097 3.903 19 H 0.056 0.944 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.157 4.157 23 C 0.060 3.940 24 O -0.372 6.372 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.355 0.645 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.208 -6.948 -22.422 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.064 4.064 5 N -0.324 5.324 6 C -0.063 4.063 7 C -0.016 4.016 8 O -0.319 6.319 9 C 0.122 3.878 10 C -0.551 4.551 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.039 3.961 19 H 0.074 0.926 20 C -0.190 4.190 21 C -0.160 4.160 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.291 6.291 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.176 0.824 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.452 -6.578 -22.271 25.466 hybrid contribution -1.099 -0.470 0.149 1.205 sum 9.353 -7.048 -22.122 25.030 Atomic orbital electron populations 1.21815 0.94398 1.02477 1.01826 1.21195 0.97126 0.99353 0.92201 0.89215 1.21906 0.99683 0.95240 0.89549 1.60543 1.21668 1.49206 1.00935 1.21927 0.99151 0.95861 0.89402 1.22297 0.84998 0.98841 0.95449 1.87788 1.17337 1.75190 1.51598 1.20175 0.94470 0.90130 0.82988 1.21101 0.90402 1.32245 1.11375 0.91560 1.24959 0.99365 0.95113 0.95145 1.69977 1.35772 1.33631 1.14410 0.86292 0.84394 0.77846 0.78033 1.19484 1.20889 1.20834 1.22160 0.96393 0.83026 0.94564 0.92641 1.22290 1.02778 0.99272 0.94625 1.21588 1.00406 0.95764 0.98251 1.22189 1.01949 0.96788 0.98501 1.22525 0.98711 0.94764 0.85659 1.87983 1.69700 1.25934 1.45452 0.92814 0.92018 0.91886 0.94661 0.91860 0.82399 0.94847 0.90862 0.94232 0.93607 0.97853 0.97627 0.92739 0.90852 0.90541 0.92029 0.91634 0.91053 0.91198 0.89096 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.53 37.16 0.32 -1.49 16 2 C -0.08 -0.91 2.43 -90.62 -0.22 -1.13 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.07 0.85 4.99 -3.82 -0.02 0.84 16 5 N -0.69 -10.80 6.50 -113.77 -0.74 -11.54 16 6 C 0.07 1.05 6.10 -3.83 -0.02 1.03 16 7 C 0.06 1.20 6.28 37.16 0.23 1.43 16 8 O -0.40 -9.76 9.84 -35.23 -0.35 -10.11 16 9 C 0.20 5.50 5.69 36.00 0.20 5.70 16 10 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 14 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.10 0.96 2.32 -26.58 -0.06 0.90 16 19 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.15 -1.28 5.24 -26.49 -0.14 -1.42 16 21 C -0.12 -0.88 6.02 -26.55 -0.16 -1.04 16 22 C -0.16 -1.12 6.14 -26.59 -0.16 -1.28 16 23 C 0.06 0.50 6.84 37.20 0.25 0.75 16 24 O -0.37 -4.12 9.15 -35.23 -0.32 -4.44 16 25 H 0.05 0.58 6.52 -51.93 -0.34 0.25 16 26 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 27 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 28 H 0.04 0.50 7.96 -51.93 -0.41 0.08 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.36 6.18 6.54 -39.29 -0.26 5.92 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.70 6.47 -51.93 -0.34 0.36 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -31.28 353.23 -8.96 -40.24 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.39 Total: -0.21 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.20 Total: -9.82 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.00 Total: -38.03 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.67 Total: -14.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.28 -8.96 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712002122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.588 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds