Wall clock time and date at job start Mon Mar 30 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47491 * 2 1 4 4 C 1.53001 * 109.47391 * 120.00387 * 2 1 3 5 5 N 1.46908 * 109.46770 * 294.99889 * 4 2 1 6 6 C 1.46897 * 110.99992 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47546 * 180.02562 * 6 5 4 8 8 O 1.42895 * 109.47100 * 64.99682 * 7 6 5 9 9 C 1.42900 * 114.00319 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47121 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00724 * 0.02562 * 10 9 8 12 12 C 1.37889 * 119.99645 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46989 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.46826 * 120.00307 * 14 12 10 17 17 H 1.48500 * 109.46940 * 240.00393 * 14 12 10 18 18 C 1.53004 * 109.47214 * 240.00096 * 2 1 3 19 19 H 1.09003 * 109.48230 * 184.97505 * 18 2 1 20 20 C 1.53280 * 109.46438 * 64.99038 * 18 2 1 21 21 C 1.53179 * 109.06328 * 182.44249 * 20 18 2 22 22 C 1.53177 * 109.10692 * 56.94222 * 21 20 18 23 23 C 1.53091 * 109.16264 * 302.97408 * 22 21 20 24 24 O 1.42901 * 109.47881 * 305.00177 * 18 2 1 25 25 H 1.08999 * 109.46849 * 59.99690 * 1 2 3 26 26 H 1.08997 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46750 * 300.00005 * 1 2 3 28 28 H 1.09000 * 109.46867 * 54.99404 * 4 2 1 29 29 H 1.09000 * 109.47495 * 175.00212 * 4 2 1 30 30 H 1.00898 * 110.99472 * 56.04505 * 5 4 2 31 31 H 1.09003 * 109.47436 * 300.00682 * 6 5 4 32 32 H 1.09005 * 109.47155 * 59.99964 * 6 5 4 33 33 H 1.08994 * 109.47591 * 185.00621 * 7 6 5 34 34 H 1.09000 * 109.46704 * 305.00404 * 7 6 5 35 35 H 1.08997 * 109.47424 * 300.01138 * 9 8 7 36 36 H 1.08999 * 109.46532 * 60.00559 * 9 8 7 37 37 H 0.97002 * 119.99548 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.64318 * 62.52729 * 20 18 2 39 39 H 1.09002 * 109.50809 * 302.28046 * 20 18 2 40 40 H 1.09002 * 109.54484 * 297.03018 * 21 20 18 41 41 H 1.08999 * 109.54222 * 176.85184 * 21 20 18 42 42 H 1.09004 * 109.52253 * 62.88396 * 22 21 20 43 43 H 1.08999 * 109.52129 * 183.00522 * 22 21 20 44 44 H 1.09000 * 109.47857 * 177.59315 * 23 22 21 45 45 H 1.09000 * 109.48011 * 297.61575 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6514 0.0374 2.4457 6 6 2.1248 -0.6272 3.6672 7 6 1.7015 0.1901 4.8893 8 8 0.2760 0.1941 4.9892 9 6 -0.2265 0.9336 6.1039 10 6 -1.7321 0.8699 6.1113 11 1 -2.2532 0.3194 5.3421 12 6 -2.4445 1.5145 7.1004 13 7 -1.8101 2.1853 8.0369 14 14 -4.3109 1.4350 7.1100 15 1 -4.7776 0.6232 5.9575 16 1 -4.7730 0.8095 8.3750 17 1 -4.8653 2.8086 7.0055 18 6 2.0400 -0.7212 -1.2493 19 1 3.1264 -0.7992 -1.2060 20 6 1.6342 0.0704 -2.4975 21 6 2.0958 -0.6903 -3.7444 22 6 1.4916 -2.0978 -3.7253 23 6 1.9030 -2.8038 -2.4307 24 8 1.4703 -2.0304 -1.3097 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1264 -0.7995 1.2056 30 1 0.6529 0.1792 2.4752 31 1 1.6905 -1.6250 3.7296 32 1 3.2117 -0.7051 3.6405 33 1 2.1276 -0.2540 5.7888 34 1 2.0611 1.2137 4.7841 35 1 0.1596 0.5045 7.0285 36 1 0.0931 1.9726 6.0244 37 1 -2.3113 2.6391 8.7325 38 1 2.1037 1.0540 -2.4763 39 1 0.5504 0.1836 -2.5203 40 1 3.1836 -0.7605 -3.7469 41 1 1.7624 -0.1624 -4.6378 42 1 0.4048 -2.0283 -3.7729 43 1 1.8583 -2.6632 -4.5820 44 1 1.4409 -3.7902 -2.3920 45 1 2.9876 -2.9091 -2.4030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712002122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:45 Heat of formation + Delta-G solvation = -142.417317 kcal Electronic energy + Delta-G solvation = -21150.522688 eV Core-core repulsion = 17973.020373 eV Total energy + Delta-G solvation = -3177.502315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61995 -38.93978 -37.47880 -35.12752 -34.53302 -34.42873 -31.15873 -29.86176 -28.63910 -26.92908 -25.51748 -24.53348 -24.04150 -22.67408 -21.31928 -20.69483 -18.65258 -17.63472 -17.28310 -17.10822 -16.66635 -16.52784 -16.37985 -15.88071 -15.52000 -15.22914 -14.97487 -14.83150 -14.38562 -14.07899 -13.75269 -13.53806 -13.39783 -13.16672 -13.08392 -12.71073 -12.69666 -12.61373 -12.37307 -12.30085 -11.95733 -11.91724 -11.79120 -11.49964 -11.39469 -11.26634 -11.05535 -10.87957 -10.28150 -10.23266 -9.35576 -8.32672 -6.44975 1.39742 1.41303 1.56029 2.34511 2.89855 3.01117 3.17852 3.22750 3.79066 3.87182 3.98269 4.02703 4.09650 4.17947 4.26230 4.31294 4.37725 4.39568 4.54263 4.57907 4.69660 4.71267 4.75052 4.83238 4.87068 4.87887 4.94630 4.95255 4.98047 5.05889 5.09873 5.14152 5.17918 5.22173 5.29524 5.42283 5.52028 5.54583 5.95376 6.11172 6.36951 6.42328 6.52931 6.81518 7.26949 8.79990 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.003011 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.507856 B = 9295.956004 C = 9891.918554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 H 0.093 0.907 4 C 0.070 3.930 5 N -0.696 5.696 6 C 0.074 3.926 7 C 0.054 3.946 8 O -0.410 6.410 9 C 0.211 3.789 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.099 3.901 19 H 0.064 0.936 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.154 4.154 23 C 0.054 3.946 24 O -0.396 6.396 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.342 0.658 31 H 0.028 0.972 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.045 0.955 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.271 0.729 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 -7.280 -23.848 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.111 0.889 4 C -0.059 4.059 5 N -0.329 5.329 6 C -0.055 4.055 7 C -0.023 4.023 8 O -0.330 6.330 9 C 0.136 3.864 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.196 1.196 18 C 0.041 3.959 19 H 0.082 0.918 20 C -0.188 4.188 21 C -0.159 4.159 22 C -0.191 4.191 23 C -0.023 4.023 24 O -0.316 6.316 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.047 0.953 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.560 -6.920 -23.714 26.865 hybrid contribution -1.027 -0.387 0.582 1.242 sum 9.533 -7.307 -23.132 26.065 Atomic orbital electron populations 1.21743 0.95289 1.01466 1.01458 1.21166 0.96285 0.99625 0.92413 0.88879 1.21941 1.00415 0.94435 0.89078 1.60611 1.20703 1.49803 1.01740 1.21912 1.00838 0.94672 0.88095 1.22609 0.82239 0.99697 0.97730 1.87756 1.20608 1.74497 1.50120 1.19800 0.94144 0.89138 0.83325 1.21413 0.91487 1.33413 1.12137 0.92052 1.25982 1.05123 0.94011 0.94211 1.70079 1.38198 1.33814 1.14912 0.85123 0.77216 0.78453 0.78532 1.18848 1.19641 1.19575 1.22127 0.96646 0.82859 0.94241 0.91780 1.22271 1.02234 0.99713 0.94610 1.21600 1.00904 0.95550 0.97824 1.22169 1.01400 0.97032 0.98540 1.22708 0.99374 0.94817 0.85385 1.87949 1.70305 1.26516 1.46845 0.91584 0.93293 0.93774 0.95850 0.90384 0.83871 0.95326 0.87676 0.93285 0.93715 0.99706 0.99677 0.92026 0.89982 0.91537 0.91186 0.90700 0.92014 0.89428 0.88576 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.53 71.98 0.61 -2.90 16 2 C -0.08 -1.68 2.43 -10.79 -0.03 -1.71 16 3 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 4 C 0.07 1.77 4.99 86.30 0.43 2.20 16 5 N -0.70 -21.58 6.50 -513.87 -3.34 -24.92 16 6 C 0.07 2.31 6.10 86.30 0.53 2.84 16 7 C 0.05 2.11 6.28 71.98 0.45 2.56 16 8 O -0.41 -20.53 9.84 -148.98 -1.47 -22.00 16 9 C 0.21 12.18 5.69 71.23 0.41 12.59 16 10 C -0.55 -33.23 9.43 25.60 0.24 -32.99 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 12 C 0.01 0.30 5.46 84.66 0.46 0.76 16 13 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 14 Si 0.98 45.04 29.54 68.60 2.03 47.07 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.10 1.84 2.32 30.69 0.07 1.91 16 19 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 20 C -0.15 -2.30 5.24 30.75 0.16 -2.14 16 21 C -0.12 -1.47 6.02 30.71 0.18 -1.29 16 22 C -0.15 -1.92 6.14 30.68 0.19 -1.73 16 23 C 0.05 0.81 6.84 72.01 0.49 1.30 16 24 O -0.40 -8.43 9.15 -148.98 -1.36 -9.79 16 25 H 0.07 1.43 6.52 -2.39 -0.02 1.41 16 26 H 0.05 1.31 7.56 -2.39 -0.02 1.29 16 27 H 0.04 1.24 6.68 -2.38 -0.02 1.22 16 28 H 0.02 0.65 7.96 -2.39 -0.02 0.63 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.34 12.16 6.54 -89.70 -0.59 11.57 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 1.15 6.47 -2.39 -0.02 1.13 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -67.19 353.23 0.69 -66.50 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.35 Total: 18.25 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.20 Total: -18.60 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -3.06 Total: -81.42 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -2.83 Total: -31.79 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.19 0.69 -66.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712002122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.919 kcal (2) G-P(sol) polarization free energy of solvation -67.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds