Wall clock time and date at job start Mon Mar 30 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39906 * 125.69774 * 2 1 4 4 C 1.30344 * 109.05673 * 179.76989 * 3 2 1 5 5 C 1.41589 * 108.00441 * 0.38446 * 4 3 2 6 6 C 1.46556 * 126.49161 * 179.87615 * 5 4 3 7 7 O 1.21324 * 120.00218 * 179.41131 * 6 5 4 8 8 C 1.50700 * 119.99952 * 359.68981 * 6 5 4 9 9 C 1.50697 * 109.47266 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99865 * 0.02562 * 9 8 6 11 11 C 1.37876 * 119.99925 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00389 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99824 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47017 * 60.00076 * 13 11 9 15 15 H 1.48504 * 109.47356 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47596 * 300.00405 * 13 11 9 17 17 C 1.34205 * 125.70443 * 180.02562 * 2 1 3 18 18 Br 1.89098 * 126.34031 * 0.02562 * 17 2 1 19 19 H 1.08998 * 109.47124 * 269.97248 * 1 2 3 20 20 H 1.08998 * 109.46952 * 29.98140 * 1 2 3 21 21 H 1.08997 * 109.46358 * 149.97765 * 1 2 3 22 22 H 1.07997 * 125.99908 * 180.22542 * 4 3 2 23 23 H 1.08997 * 109.47392 * 300.00196 * 8 6 5 24 24 H 1.09004 * 109.46932 * 59.99535 * 8 6 5 25 25 H 0.96998 * 120.00138 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2814 1.1362 0.0000 4 6 3.5303 0.7629 0.0049 5 6 3.5640 -0.6526 -0.0007 6 6 4.7626 -1.4958 -0.0004 7 8 4.6543 -2.7042 0.0052 8 6 6.1298 -0.8620 -0.0008 9 6 7.1832 -1.9397 0.0001 10 1 6.8918 -2.9796 0.0005 11 6 8.5190 -1.5980 0.0005 12 7 8.8739 -0.3317 -0.0004 13 14 9.8246 -2.9339 0.0010 14 1 9.6704 -3.7773 -1.2115 15 1 11.1720 -2.3093 0.0020 16 1 9.6697 -3.7773 1.2134 17 6 2.2483 -1.0898 -0.0005 18 35 1.6653 -2.8887 -0.0020 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3632 -0.8898 -0.5142 22 1 4.3886 1.4183 0.0096 23 1 6.2433 -0.2433 -0.8910 24 1 6.2434 -0.2426 0.8889 25 1 9.8136 -0.0914 0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712426684.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:19 Heat of formation + Delta-G solvation = 21.263919 kcal Electronic energy + Delta-G solvation = -13105.194138 eV Core-core repulsion = 10552.312764 eV Total energy + Delta-G solvation = -2552.881374 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.44163 -39.58159 -35.06466 -34.67880 -33.14713 -31.37661 -30.24776 -28.16690 -25.78440 -23.42979 -21.75352 -20.36434 -18.48602 -17.97794 -16.95876 -16.64997 -16.04960 -15.47710 -15.39282 -15.32809 -14.21658 -13.92090 -13.73739 -13.62048 -13.08430 -12.80415 -12.51818 -12.42753 -12.38532 -11.96701 -11.51568 -11.35180 -10.55768 -10.49708 -10.17161 -9.79195 -8.18045 -6.24849 -0.16528 0.00359 0.93125 1.42639 1.44066 1.46014 1.54462 2.20680 2.45271 3.16919 3.17224 3.78564 3.90037 4.19217 4.28393 4.36847 4.56317 4.97666 5.22001 5.28935 5.39750 5.47403 5.78397 6.20336 6.25857 6.86056 7.01563 7.43235 8.93695 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.006148 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.821730 B = 4553.525273 C = 5385.898736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.337 5.337 3 N -0.289 5.289 4 C 0.102 3.898 5 C -0.298 4.298 6 C 0.421 3.579 7 O -0.484 6.484 8 C -0.011 4.011 9 C -0.539 4.539 10 H 0.058 0.942 11 C 0.011 3.989 12 N -0.924 5.924 13 Si 0.959 3.041 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.273 1.273 17 C 0.114 3.886 18 Br 0.060 6.940 19 H 0.104 0.896 20 H 0.118 0.882 21 H 0.107 0.893 22 H 0.217 0.783 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.651 0.249 -0.042 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.118 5.118 3 N -0.111 5.111 4 C -0.084 4.084 5 C -0.314 4.314 6 C 0.300 3.700 7 O -0.361 6.361 8 C -0.048 4.048 9 C -0.577 4.577 10 H 0.076 0.924 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.784 3.216 14 H -0.198 1.198 15 H -0.202 1.202 16 H -0.198 1.198 17 C -0.099 4.099 18 Br 0.142 6.858 19 H 0.122 0.878 20 H 0.137 0.863 21 H 0.126 0.874 22 H 0.234 0.766 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.767 0.097 -0.044 20.768 hybrid contribution 1.536 -0.683 0.009 1.681 sum -19.232 -0.586 -0.035 19.240 Atomic orbital electron populations 1.22578 0.70434 1.07065 1.06200 1.48889 1.08682 1.01409 1.52814 1.77158 1.02214 1.06512 1.25194 1.24500 0.95743 0.93276 0.94908 1.21166 0.93141 0.95842 1.21202 1.22169 0.90198 0.87976 0.69668 1.90396 1.89523 1.17600 1.38574 1.19331 0.89460 0.97184 0.98867 1.21422 0.91523 0.93837 1.50916 0.92422 1.25742 1.00607 0.97720 0.94691 1.70022 1.17660 1.17373 1.51364 0.85596 0.77911 0.79233 0.78868 1.19774 1.20209 1.19787 1.23691 0.92876 0.89618 1.03697 1.96824 1.88120 1.03736 1.97105 0.87754 0.86321 0.87437 0.76616 0.93561 0.93543 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.24 127.77 1.44 2.53 15 2 N -0.34 -8.85 3.98 -361.72 -1.44 -10.29 15 3 N -0.29 -8.58 12.48 -56.13 -0.70 -9.28 15 4 C 0.10 3.29 11.55 85.74 0.99 4.28 15 5 C -0.30 -11.19 6.11 -20.19 -0.12 -11.31 15 6 C 0.42 19.40 7.12 27.86 0.20 19.60 15 7 O -0.48 -24.18 14.46 -3.16 -0.05 -24.23 15 8 C -0.01 -0.59 4.94 29.10 0.14 -0.45 15 9 C -0.54 -31.48 8.92 25.60 0.23 -31.25 15 10 H 0.06 3.48 6.75 -2.91 -0.02 3.46 15 11 C 0.01 0.62 5.46 84.65 0.46 1.09 15 12 N -0.92 -54.15 13.29 21.45 0.28 -53.86 15 13 Si 0.96 45.24 29.54 68.60 2.03 47.27 15 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 16 H -0.27 -12.63 7.11 99.48 0.71 -11.92 15 17 C 0.11 3.60 7.43 84.43 0.63 4.23 15 18 Br 0.06 1.67 31.67 -20.37 -0.65 1.03 15 19 H 0.10 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.12 1.27 8.14 -2.39 -0.02 1.26 15 21 H 0.11 1.22 7.62 -2.39 -0.02 1.20 15 22 H 0.22 6.14 8.04 -2.91 -0.02 6.12 15 23 H 0.05 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.05 2.42 8.14 -2.38 -0.02 2.40 15 25 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 Total: -1.00 -69.06 252.79 4.66 -64.41 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: 1.21 Total: -3.77 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.96 Total: -11.28 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.85 Total: -73.43 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 35 Polarization: 1.67 SS G_CDS: -0.65 Total: 1.03 kcal Total: -69.06 4.66 -64.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712426684.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.673 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds