Wall clock time and date at job start Mon Mar 30 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99546 * 2 1 4 4 C 1.53012 * 109.46659 * 184.67112 * 3 2 1 5 5 N 1.46898 * 109.47145 * 69.54203 * 4 3 2 6 6 C 1.46896 * 110.99734 * 161.13814 * 5 4 3 7 7 H 1.09006 * 109.46813 * 156.38944 * 6 5 4 8 8 C 1.53000 * 109.47544 * 36.38793 * 6 5 4 9 9 C 1.53006 * 109.46988 * 276.38755 * 6 5 4 10 10 C 1.50703 * 109.46982 * 292.72910 * 9 6 5 11 11 H 1.07998 * 119.99844 * 354.94826 * 10 9 6 12 12 C 1.37878 * 119.99643 * 174.94818 * 10 9 6 13 13 N 1.31514 * 119.99973 * 5.16328 * 12 10 9 14 14 Si 1.86796 * 119.99792 * 185.15797 * 12 10 9 15 15 H 1.48505 * 109.47209 * 5.00616 * 14 12 10 16 16 H 1.48509 * 109.47041 * 125.00271 * 14 12 10 17 17 H 1.48497 * 109.47366 * 245.00111 * 14 12 10 18 18 C 1.46896 * 110.99768 * 285.09103 * 5 4 3 19 19 C 1.53181 * 109.54451 * 286.18385 * 18 5 4 20 20 C 1.53106 * 109.15899 * 183.24207 * 19 18 5 21 21 O 1.42897 * 109.48446 * 57.47621 * 20 19 18 22 22 C 1.42900 * 114.09987 * 298.88709 * 21 20 19 23 23 C 1.53088 * 109.41616 * 61.16113 * 22 21 20 24 24 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47239 * 300.00290 * 1 2 3 26 26 H 1.09003 * 109.47063 * 60.00103 * 1 2 3 27 27 H 1.08997 * 109.47485 * 64.67549 * 3 2 1 28 28 H 1.08995 * 109.47255 * 304.66843 * 3 2 1 29 29 H 1.09005 * 109.46831 * 309.53757 * 4 3 2 30 30 H 1.09002 * 109.46476 * 189.54297 * 4 3 2 31 31 H 1.09006 * 109.46644 * 49.75731 * 8 6 5 32 32 H 1.08998 * 109.46948 * 289.76214 * 8 6 5 33 33 H 1.08994 * 109.47402 * 169.75503 * 8 6 5 34 34 H 1.08998 * 109.46791 * 52.72730 * 9 6 5 35 35 H 1.08999 * 109.46874 * 172.73012 * 9 6 5 36 36 H 0.97000 * 119.99633 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.54983 * 46.36482 * 18 5 4 38 38 H 1.08995 * 109.52184 * 303.06149 * 19 18 5 39 39 H 1.09002 * 109.51875 * 63.25107 * 19 18 5 40 40 H 1.08997 * 109.40612 * 297.49209 * 20 19 18 41 41 H 1.08997 * 109.49032 * 177.51216 * 20 19 18 42 42 H 1.09004 * 109.48273 * 301.17877 * 22 21 20 43 43 H 1.08998 * 109.49021 * 181.14632 * 22 21 20 44 44 H 1.09001 * 109.53024 * 182.48973 * 23 22 21 45 45 H 1.09001 * 109.57579 * 62.32400 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5311 1.1866 -0.1175 5 7 3.8826 0.7092 -1.4615 6 6 5.2887 0.9994 -1.7722 7 1 5.6418 0.3081 -2.5375 8 6 6.1346 0.8360 -0.5078 9 6 5.4116 2.4353 -2.2860 10 6 4.7266 2.5506 -3.6234 11 1 4.3225 1.6701 -4.1008 12 6 4.6157 3.7801 -4.2374 13 7 5.1952 4.8347 -3.7068 14 14 3.6425 3.9479 -5.8230 15 1 2.9935 2.6516 -6.1450 16 1 2.6022 4.9946 -5.6569 17 1 4.5581 4.3309 -6.9276 18 6 3.5975 -0.7250 -1.6019 19 6 4.6453 -1.5337 -0.8308 20 6 4.3881 -3.0271 -1.0493 21 8 4.4222 -3.3170 -2.4481 22 6 3.4321 -2.6253 -3.2117 23 6 3.6522 -1.1158 -3.0821 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7563 1.8162 0.9289 28 1 1.6239 1.8751 -0.8452 29 1 3.8989 0.4802 0.6268 30 1 3.9859 2.1626 0.0520 31 1 5.9082 -0.1225 -0.0406 32 1 5.9064 1.6427 0.1888 33 1 7.1918 0.8712 -0.7709 34 1 4.9412 3.1164 -1.5769 35 1 6.4651 2.6936 -2.3939 36 1 5.1169 5.6998 -4.1386 37 1 2.6057 -0.9404 -1.2044 38 1 5.6411 -1.2799 -1.1942 39 1 4.5743 -1.3021 0.2319 40 1 3.4091 -3.2885 -0.6476 41 1 5.1570 -3.6070 -0.5389 42 1 2.4405 -2.8814 -2.8384 43 1 3.5123 -2.9156 -4.2593 44 1 2.8716 -0.5856 -3.6278 45 1 4.6269 -0.8523 -3.4926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716515688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:50 Heat of formation + Delta-G solvation = -83.360011 kcal Electronic energy + Delta-G solvation = -23301.094907 eV Core-core repulsion = 20126.153509 eV Total energy + Delta-G solvation = -3174.941398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89511 -37.88548 -36.89326 -33.17621 -31.98009 -31.01974 -30.85332 -27.95651 -27.34545 -26.08475 -23.77282 -23.53134 -22.67421 -21.59738 -20.30908 -18.20167 -16.58201 -16.24446 -15.93569 -15.86225 -15.76339 -15.05266 -14.69569 -14.45789 -14.33069 -14.08479 -13.59589 -13.17225 -12.80257 -12.54614 -12.01739 -11.93094 -11.87624 -11.51956 -11.46146 -11.30114 -11.14203 -10.94942 -10.79891 -10.74686 -10.52254 -10.32961 -10.22315 -10.18041 -9.79569 -9.32328 -9.17064 -9.06424 -8.88214 -8.22252 -7.37817 -5.86181 -3.82410 3.38410 3.46080 3.51099 3.97939 4.08603 4.49433 4.58472 5.11096 5.17986 5.26175 5.30902 5.40411 5.46085 5.49837 5.51460 5.55906 5.62844 5.67828 5.69394 5.76247 5.83142 5.86019 5.90233 5.98859 6.07885 6.11087 6.20269 6.25085 6.30641 6.39533 6.58067 6.65913 6.70562 6.84643 7.12190 7.33786 7.40601 7.62709 7.71302 7.96874 8.12918 8.16559 8.62679 9.22109 9.78209 11.26037 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.006838 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.980507 B = 4093.517813 C = 4467.081900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.064 3.936 4 C 0.060 3.940 5 N -0.500 5.500 6 C 0.084 3.916 7 H 0.070 0.930 8 C -0.197 4.197 9 C 0.034 3.966 10 C -0.483 4.483 11 H 0.058 0.942 12 C 0.050 3.950 13 N -0.904 5.904 14 Si 0.885 3.115 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.288 1.288 18 C 0.076 3.924 19 C -0.191 4.191 20 C 0.067 3.933 21 O -0.388 6.388 22 C 0.064 3.936 23 C -0.145 4.145 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.256 0.744 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 -12.263 8.247 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.068 4.068 5 N -0.222 5.222 6 C -0.024 4.024 7 H 0.088 0.912 8 C -0.255 4.255 9 C -0.003 4.003 10 C -0.522 4.522 11 H 0.076 0.924 12 C -0.149 4.149 13 N -0.545 5.545 14 Si 0.714 3.286 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.033 4.033 19 C -0.230 4.230 20 C -0.011 4.011 21 O -0.307 6.307 22 C -0.013 4.013 23 C -0.183 4.183 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.151 -12.089 7.785 15.639 hybrid contribution -0.424 0.414 -0.135 0.608 sum -6.575 -11.675 7.650 15.429 Atomic orbital electron populations 1.22667 0.82113 1.01971 0.99791 1.87830 1.18893 1.28901 1.95115 1.22715 0.94499 0.84116 0.99903 1.22108 0.92876 1.00923 0.90914 1.62245 1.22121 1.13196 1.24608 1.21979 0.84665 1.01367 0.94396 0.91231 1.22998 1.00989 1.01260 1.00271 1.19131 0.96366 0.88597 0.96195 1.21167 1.34632 0.93179 1.03212 0.92416 1.24979 0.96176 0.96285 0.97437 1.69982 1.44624 0.99651 1.40248 0.86640 0.80085 0.77832 0.84014 1.19820 1.21444 1.21465 1.22056 0.99207 0.87433 0.94567 1.23214 1.02327 0.96194 1.01252 1.22491 1.00688 0.95630 0.82285 1.87874 1.56455 1.67540 1.18821 1.22598 0.90833 0.92094 0.95814 1.22227 1.04036 0.94733 0.97256 0.90355 0.94666 0.94035 0.93818 0.91773 0.94609 0.89200 0.92295 0.93022 0.93051 0.96398 0.96850 0.93483 0.87805 0.90076 0.91314 0.93686 0.89798 0.93688 0.89266 0.90274 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.55 7.83 -35.23 -0.28 -5.83 16 3 C 0.06 0.96 6.22 37.16 0.23 1.19 16 4 C 0.06 0.99 4.06 -3.82 -0.02 0.97 16 5 N -0.50 -9.23 4.02 -218.49 -0.88 -10.11 16 6 C 0.08 1.67 1.55 -67.71 -0.10 1.57 16 7 H 0.07 1.46 5.52 -51.93 -0.29 1.18 16 8 C -0.20 -3.35 7.35 37.16 0.27 -3.08 16 9 C 0.03 0.87 4.53 -27.88 -0.13 0.74 16 10 C -0.48 -13.41 8.88 -34.44 -0.31 -13.71 16 11 H 0.06 1.59 7.75 -52.49 -0.41 1.18 16 12 C 0.05 1.44 5.45 -17.82 -0.10 1.34 16 13 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 C 0.08 1.23 2.12 -67.53 -0.14 1.09 16 19 C -0.19 -2.77 3.57 -26.58 -0.09 -2.86 16 20 C 0.07 0.88 6.84 37.21 0.25 1.13 16 21 O -0.39 -5.87 10.77 -35.23 -0.38 -6.25 16 22 C 0.06 0.89 6.84 37.20 0.25 1.15 16 23 C -0.14 -2.38 5.49 -26.59 -0.15 -2.53 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.55 5.85 -51.93 -0.30 0.25 16 30 H 0.09 1.58 6.15 -51.93 -0.32 1.26 16 31 H 0.06 0.89 4.00 -51.93 -0.21 0.69 16 32 H 0.05 0.87 6.79 -51.93 -0.35 0.52 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.02 0.48 7.18 -51.93 -0.37 0.11 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.10 1.69 5.01 -51.93 -0.26 1.43 16 38 H 0.08 1.28 5.27 -51.93 -0.27 1.01 16 39 H 0.07 0.96 5.99 -51.93 -0.31 0.65 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.07 1.39 6.37 -51.93 -0.33 1.06 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -30.38 332.56 -7.35 -37.73 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.63 Total: 0.47 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 1.09 Total: -11.54 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.14 Total: -36.63 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.66 Total: -12.07 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.38 -7.35 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716515688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.631 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds