Wall clock time and date at job start Mon Mar 30 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99546 * 2 1 4 4 C 1.53012 * 109.46659 * 184.67112 * 3 2 1 5 5 N 1.46898 * 109.47145 * 69.54203 * 4 3 2 6 6 C 1.46896 * 110.99734 * 161.13814 * 5 4 3 7 7 H 1.09006 * 109.46813 * 156.38944 * 6 5 4 8 8 C 1.53000 * 109.47544 * 36.38793 * 6 5 4 9 9 C 1.53006 * 109.46988 * 276.38755 * 6 5 4 10 10 C 1.50703 * 109.46982 * 292.72910 * 9 6 5 11 11 H 1.07998 * 119.99844 * 354.94826 * 10 9 6 12 12 C 1.37878 * 119.99643 * 174.94818 * 10 9 6 13 13 N 1.31514 * 119.99973 * 5.16328 * 12 10 9 14 14 Si 1.86796 * 119.99792 * 185.15797 * 12 10 9 15 15 H 1.48505 * 109.47209 * 5.00616 * 14 12 10 16 16 H 1.48509 * 109.47041 * 125.00271 * 14 12 10 17 17 H 1.48497 * 109.47366 * 245.00111 * 14 12 10 18 18 C 1.46896 * 110.99768 * 285.09103 * 5 4 3 19 19 C 1.53181 * 109.54451 * 286.18385 * 18 5 4 20 20 C 1.53106 * 109.15899 * 183.24207 * 19 18 5 21 21 O 1.42897 * 109.48446 * 57.47621 * 20 19 18 22 22 C 1.42900 * 114.09987 * 298.88709 * 21 20 19 23 23 C 1.53088 * 109.41616 * 61.16113 * 22 21 20 24 24 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47239 * 300.00290 * 1 2 3 26 26 H 1.09003 * 109.47063 * 60.00103 * 1 2 3 27 27 H 1.08997 * 109.47485 * 64.67549 * 3 2 1 28 28 H 1.08995 * 109.47255 * 304.66843 * 3 2 1 29 29 H 1.09005 * 109.46831 * 309.53757 * 4 3 2 30 30 H 1.09002 * 109.46476 * 189.54297 * 4 3 2 31 31 H 1.09006 * 109.46644 * 49.75731 * 8 6 5 32 32 H 1.08998 * 109.46948 * 289.76214 * 8 6 5 33 33 H 1.08994 * 109.47402 * 169.75503 * 8 6 5 34 34 H 1.08998 * 109.46791 * 52.72730 * 9 6 5 35 35 H 1.08999 * 109.46874 * 172.73012 * 9 6 5 36 36 H 0.97000 * 119.99633 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.54983 * 46.36482 * 18 5 4 38 38 H 1.08995 * 109.52184 * 303.06149 * 19 18 5 39 39 H 1.09002 * 109.51875 * 63.25107 * 19 18 5 40 40 H 1.08997 * 109.40612 * 297.49209 * 20 19 18 41 41 H 1.08997 * 109.49032 * 177.51216 * 20 19 18 42 42 H 1.09004 * 109.48273 * 301.17877 * 22 21 20 43 43 H 1.08998 * 109.49021 * 181.14632 * 22 21 20 44 44 H 1.09001 * 109.53024 * 182.48973 * 23 22 21 45 45 H 1.09001 * 109.57579 * 62.32400 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5311 1.1866 -0.1175 5 7 3.8826 0.7092 -1.4615 6 6 5.2887 0.9994 -1.7722 7 1 5.6418 0.3081 -2.5375 8 6 6.1346 0.8360 -0.5078 9 6 5.4116 2.4353 -2.2860 10 6 4.7266 2.5506 -3.6234 11 1 4.3225 1.6701 -4.1008 12 6 4.6157 3.7801 -4.2374 13 7 5.1952 4.8347 -3.7068 14 14 3.6425 3.9479 -5.8230 15 1 2.9935 2.6516 -6.1450 16 1 2.6022 4.9946 -5.6569 17 1 4.5581 4.3309 -6.9276 18 6 3.5975 -0.7250 -1.6019 19 6 4.6453 -1.5337 -0.8308 20 6 4.3881 -3.0271 -1.0493 21 8 4.4222 -3.3170 -2.4481 22 6 3.4321 -2.6253 -3.2117 23 6 3.6522 -1.1158 -3.0821 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7563 1.8162 0.9289 28 1 1.6239 1.8751 -0.8452 29 1 3.8989 0.4802 0.6268 30 1 3.9859 2.1626 0.0520 31 1 5.9082 -0.1225 -0.0406 32 1 5.9064 1.6427 0.1888 33 1 7.1918 0.8712 -0.7709 34 1 4.9412 3.1164 -1.5769 35 1 6.4651 2.6936 -2.3939 36 1 5.1169 5.6998 -4.1386 37 1 2.6057 -0.9404 -1.2044 38 1 5.6411 -1.2799 -1.1942 39 1 4.5743 -1.3021 0.2319 40 1 3.4091 -3.2885 -0.6476 41 1 5.1570 -3.6070 -0.5389 42 1 2.4405 -2.8814 -2.8384 43 1 3.5123 -2.9156 -4.2593 44 1 2.8716 -0.5856 -3.6278 45 1 4.6269 -0.8523 -3.4926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716515688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:49 Heat of formation + Delta-G solvation = -103.661828 kcal Electronic energy + Delta-G solvation = -23301.975260 eV Core-core repulsion = 20126.153509 eV Total energy + Delta-G solvation = -3175.821751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18986 -39.03264 -38.13776 -35.13963 -33.49793 -32.48154 -32.03960 -29.36161 -29.08917 -27.07367 -25.41101 -24.75524 -24.12980 -23.09640 -21.61164 -19.68282 -18.39658 -17.67011 -17.18952 -17.11674 -16.88000 -16.48813 -16.25263 -15.79960 -15.62011 -15.39679 -14.78980 -14.45642 -14.29586 -14.18604 -13.58158 -13.33181 -13.23184 -13.11403 -12.83426 -12.72749 -12.64467 -12.40911 -12.37612 -12.19348 -12.05736 -11.82830 -11.72226 -11.55249 -11.17963 -10.97041 -10.85876 -10.48005 -10.41045 -10.29396 -8.79261 -8.08417 -6.11347 1.39402 1.40676 1.53321 2.47572 2.91030 3.01256 3.13147 3.28242 3.93087 3.98688 4.08859 4.15091 4.27520 4.34730 4.38835 4.40927 4.45731 4.51781 4.57642 4.60760 4.63843 4.71378 4.76657 4.77910 4.84303 4.86721 4.92379 4.99414 5.02187 5.12226 5.19113 5.23720 5.29278 5.41939 5.49628 5.59259 5.70582 5.92524 6.27960 6.32313 6.38917 6.57461 6.61909 7.01616 7.53270 9.04012 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.006838 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.980507 B = 4093.517813 C = 4467.081900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.072 3.928 4 C 0.061 3.939 5 N -0.521 5.521 6 C 0.098 3.902 7 H 0.057 0.943 8 C -0.187 4.187 9 C 0.042 3.958 10 C -0.490 4.490 11 H 0.055 0.945 12 C -0.005 4.005 13 N -0.940 5.940 14 Si 0.951 3.049 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.079 3.921 19 C -0.185 4.185 20 C 0.066 3.934 21 O -0.402 6.402 22 C 0.069 3.931 23 C -0.143 4.143 24 H 0.099 0.901 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.050 0.950 34 H -0.006 1.006 35 H -0.016 1.016 36 H 0.257 0.743 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 -14.231 8.948 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.005 4.005 4 C -0.067 4.067 5 N -0.244 5.244 6 C -0.010 4.010 7 H 0.075 0.925 8 C -0.246 4.246 9 C 0.004 3.996 10 C -0.528 4.528 11 H 0.073 0.927 12 C -0.200 4.200 13 N -0.583 5.583 14 Si 0.777 3.223 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.029 4.029 19 C -0.224 4.224 20 C -0.011 4.011 21 O -0.322 6.322 22 C -0.008 4.008 23 C -0.181 4.181 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.013 0.987 35 H 0.002 0.998 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.519 -14.077 8.491 18.078 hybrid contribution -0.031 1.025 -0.334 1.079 sum -7.550 -13.052 8.158 17.144 Atomic orbital electron populations 1.22863 0.80307 1.03530 1.00283 1.87774 1.20779 1.28117 1.95197 1.22539 0.93334 0.84597 1.00018 1.22098 0.94092 1.00266 0.90259 1.62100 1.20804 1.15238 1.26224 1.21570 0.86691 0.97356 0.95415 0.92482 1.22891 1.00273 1.02600 0.98792 1.18988 0.93842 0.91698 0.95054 1.21468 1.34189 0.93060 1.04130 0.92680 1.25797 0.97229 0.96083 1.00924 1.70107 1.46072 1.00149 1.41965 0.85606 0.78649 0.78037 0.79976 1.18936 1.21002 1.20968 1.22060 1.00077 0.86149 0.94597 1.23116 1.00695 0.97162 1.01378 1.22627 1.02322 0.94566 0.81583 1.87866 1.56921 1.67491 1.19885 1.22596 0.91551 0.89895 0.96708 1.22194 1.01855 0.96774 0.97289 0.88291 0.93156 0.94574 0.91570 0.94149 0.92922 0.91017 0.89774 0.93033 0.93110 0.98748 0.99752 0.93411 0.87192 0.91567 0.90167 0.92135 0.87805 0.91818 0.88164 0.91815 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.40 -10.52 7.83 -148.98 -1.17 -11.69 16 3 C 0.07 2.08 6.22 71.99 0.45 2.52 16 4 C 0.06 1.96 4.06 86.31 0.35 2.31 16 5 N -0.52 -19.26 4.02 -845.16 -3.40 -22.66 16 6 C 0.10 4.00 1.55 44.92 0.07 4.07 16 7 H 0.06 2.47 5.52 -2.38 -0.01 2.46 16 8 C -0.19 -6.32 7.35 71.98 0.53 -5.79 16 9 C 0.04 2.19 4.53 29.85 0.14 2.32 16 10 C -0.49 -27.98 8.88 25.60 0.23 -27.75 16 11 H 0.05 3.11 7.75 -2.91 -0.02 3.09 16 12 C 0.00 -0.28 5.45 84.65 0.46 0.19 16 13 N -0.94 -58.20 13.29 21.45 0.29 -57.92 16 14 Si 0.95 45.90 29.54 68.60 2.03 47.93 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 17 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 18 C 0.08 2.47 2.12 45.04 0.10 2.57 16 19 C -0.18 -4.95 3.57 30.69 0.11 -4.84 16 20 C 0.07 1.54 6.84 72.02 0.49 2.03 16 21 O -0.40 -11.21 10.77 -148.98 -1.60 -12.81 16 22 C 0.07 1.81 6.84 72.01 0.49 2.30 16 23 C -0.14 -4.65 5.49 30.69 0.17 -4.48 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.51 5.85 -2.38 -0.01 1.50 16 30 H 0.07 2.56 6.15 -2.39 -0.01 2.54 16 31 H 0.08 2.41 4.00 -2.38 -0.01 2.40 16 32 H 0.05 1.73 6.79 -2.39 -0.02 1.71 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H -0.01 -0.33 7.18 -2.39 -0.02 -0.35 16 35 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.11 3.35 5.01 -2.39 -0.01 3.34 16 38 H 0.07 1.99 5.27 -2.39 -0.01 1.98 16 39 H 0.08 1.97 5.99 -2.39 -0.01 1.96 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.05 1.81 6.37 -2.39 -0.02 1.79 16 Total: -1.00 -66.28 332.56 1.92 -64.36 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.96 Total: 15.58 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.83 Total: -22.79 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.12 Total: -80.58 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -2.77 Total: -24.50 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -66.28 1.92 -64.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716515688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.304 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds