Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47442 * 295.04034 * 3 2 1 5 5 C 1.36941 * 119.99880 * 275.00509 * 4 3 2 6 6 H 1.07994 * 119.99980 * 185.66456 * 5 4 3 7 7 C 1.38814 * 119.99927 * 5.65562 * 5 4 3 8 8 N 1.31618 * 119.99970 * 27.21845 * 7 5 4 9 9 Si 1.86802 * 119.99911 * 207.21799 * 7 5 4 10 10 H 1.48501 * 109.47082 * 90.00351 * 9 7 5 11 11 H 1.48497 * 109.47190 * 210.00238 * 9 7 5 12 12 H 1.48494 * 109.46910 * 330.00164 * 9 7 5 13 13 S 1.65597 * 119.99942 * 94.99883 * 4 3 2 14 14 O 1.42095 * 106.40523 * 336.03449 * 13 4 3 15 15 O 1.42095 * 106.40182 * 203.11130 * 13 4 3 16 16 C 1.76201 * 107.21398 * 89.57447 * 13 4 3 17 17 C 1.35145 * 127.24985 * 90.00035 * 16 13 4 18 18 C 1.37806 * 114.75785 * 179.74868 * 17 16 13 19 19 N 1.30081 * 116.88580 * 0.25259 * 18 17 16 20 20 S 1.69601 * 107.14885 * 359.97438 * 19 18 17 21 21 H 4.40641 * 5.51414 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.47083 * 175.03995 * 3 2 1 23 23 H 1.09003 * 109.47064 * 55.04433 * 3 2 1 24 24 H 0.96998 * 119.99635 * 179.97438 * 8 7 5 25 25 H 1.08001 * 122.61726 * 0.02865 * 17 16 13 26 26 H 1.08005 * 121.55499 * 180.26395 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5837 1.2514 5 6 3.2650 0.1989 2.3675 6 1 3.7105 -0.2079 3.2632 7 6 2.8248 1.5153 2.3475 8 7 1.8489 1.8705 1.5390 9 14 3.6176 2.7824 3.4679 10 1 4.7630 3.4158 2.7665 11 1 2.6189 3.8221 3.8240 12 1 4.1010 2.1165 4.7040 13 16 3.5293 -2.1907 1.3162 14 8 2.7965 -2.8260 0.2776 15 8 3.4328 -2.5728 2.6814 16 6 5.2310 -2.3278 0.8802 17 6 6.2948 -2.2825 1.7123 18 6 7.5181 -2.4228 1.0934 19 7 7.5096 -2.5750 -0.1985 20 16 5.8882 -2.5452 -0.6949 21 1 -1.0499 0.0001 0.0003 22 1 3.0089 1.0246 -0.0889 23 1 3.0096 -0.5880 -0.8423 24 1 1.5411 2.7903 1.5253 25 1 6.1939 -2.1513 2.7796 26 1 8.4406 -2.4074 1.6548 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717751494.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = 28.573552 kcal Electronic energy + Delta-G solvation = -16705.391055 eV Core-core repulsion = 13812.050914 eV Total energy + Delta-G solvation = -2893.340142 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.008 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.76653 -38.21522 -38.00295 -36.82920 -33.60711 -32.88405 -32.45594 -28.29448 -26.43337 -25.66339 -22.09003 -20.37961 -20.03918 -19.54665 -18.60081 -18.13302 -17.69121 -16.50576 -16.20969 -15.81042 -15.33395 -15.25589 -14.96845 -14.29775 -14.22459 -13.53184 -13.28337 -13.19541 -12.94345 -12.83726 -12.68367 -12.38572 -12.28069 -11.97230 -11.63480 -11.53199 -11.24900 -10.90593 -10.52451 -10.06942 -9.85231 -8.15080 -5.77445 -0.89538 -0.51678 0.25232 0.72684 1.30372 1.50453 1.53941 1.62366 2.01686 2.40872 2.53860 2.68596 2.83250 3.12003 3.53867 3.95578 3.99315 4.06000 4.35596 4.58717 4.76867 4.93611 5.23731 5.38375 5.54012 5.64635 6.41864 6.98067 7.28673 7.33133 8.80479 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.019639 B = 0.008969 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.385614 B = 3120.971144 C = 3812.893359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.137 4.137 3 C 0.249 3.751 4 N -0.843 5.843 5 C -0.352 4.352 6 H 0.111 0.889 7 C 0.012 3.988 8 N -0.867 5.867 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.265 1.265 13 S 2.691 3.309 14 O -0.983 6.983 15 O -0.979 6.979 16 C -0.787 4.787 17 C -0.064 4.064 18 C 0.081 3.919 19 N -0.456 5.456 20 S 0.344 5.656 21 H 0.230 0.770 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.268 0.732 25 H 0.186 0.814 26 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 -3.221 -1.880 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.140 4.140 3 C 0.124 3.876 4 N -0.674 5.674 5 C -0.483 4.483 6 H 0.129 0.871 7 C -0.194 4.194 8 N -0.504 5.504 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.189 1.189 13 S 2.778 3.222 14 O -0.973 6.973 15 O -0.969 6.969 16 C -0.998 4.998 17 C -0.104 4.104 18 C -0.117 4.117 19 N -0.278 5.278 20 S 0.498 5.502 21 H 0.246 0.754 22 H 0.115 0.885 23 H 0.102 0.898 24 H 0.078 0.922 25 H 0.203 0.797 26 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 8.202 -4.105 -3.942 9.984 hybrid contribution 0.325 1.288 2.233 2.599 sum 8.527 -2.818 -1.709 9.142 Atomic orbital electron populations 1.25050 0.96392 1.04456 1.02061 1.23384 0.95116 0.97108 0.98381 1.17926 0.84869 1.00524 0.84329 1.53128 1.70953 1.27864 1.15490 1.19423 1.42925 0.94641 0.91300 0.87111 1.25727 0.95061 0.98982 0.99612 1.70325 1.21330 1.18544 1.40229 0.85394 0.78370 0.78299 0.79097 1.19689 1.21633 1.18890 1.02334 0.74125 0.72969 0.72725 1.93503 1.70078 1.74851 1.58915 1.93450 1.86608 1.82300 1.34507 1.37629 1.31602 1.20908 1.09644 1.21694 0.89164 0.95495 1.04023 1.23698 1.01031 0.97018 0.89929 1.76577 1.13612 1.20978 1.16681 1.83747 0.96840 1.62934 1.06685 0.75355 0.88489 0.89799 0.92177 0.79682 0.74629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.36 19.23 74.32 1.43 -9.93 15 2 C -0.14 -6.50 11.12 31.13 0.35 -6.15 15 3 C 0.25 11.15 5.14 84.57 0.43 11.58 15 4 N -0.84 -39.20 2.89 -352.51 -1.02 -40.22 15 5 C -0.35 -17.33 9.37 84.03 0.79 -16.54 15 6 H 0.11 5.37 7.38 -2.91 -0.02 5.35 15 7 C 0.01 0.58 4.89 84.86 0.41 1.00 15 8 N -0.87 -43.70 8.96 21.65 0.19 -43.51 15 9 Si 0.96 38.57 29.63 68.60 2.03 40.60 15 10 H -0.27 -10.49 7.11 99.48 0.71 -9.79 15 11 H -0.29 -11.76 7.11 99.48 0.71 -11.06 15 12 H -0.26 -10.30 7.11 99.48 0.71 -9.60 15 13 S 2.69 115.78 5.77 -56.49 -0.33 115.45 15 14 O -0.98 -44.80 16.96 -128.00 -2.17 -46.97 15 15 O -0.98 -46.25 16.74 -128.00 -2.14 -48.39 15 16 C -0.79 -27.28 6.65 67.11 0.45 -26.84 15 17 C -0.06 -1.81 10.04 21.45 0.22 -1.60 15 18 C 0.08 1.87 11.27 84.85 0.96 2.83 15 19 N -0.46 -12.70 12.09 -62.61 -0.76 -13.45 15 20 S 0.34 10.68 23.67 -56.49 -1.34 9.34 15 21 H 0.23 7.90 7.80 -4.42 -0.03 7.87 15 22 H 0.10 4.43 6.54 -2.39 -0.02 4.42 15 23 H 0.08 3.26 7.62 -2.39 -0.02 3.24 15 24 H 0.27 12.94 8.31 -92.71 -0.77 12.17 15 25 H 0.19 4.54 8.06 -2.91 -0.02 4.51 15 26 H 0.24 2.99 8.06 -2.91 -0.02 2.97 15 Total: -1.00 -63.43 269.50 0.72 -62.71 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.21 Total: 10.09 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 5.03 Total: -45.66 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -1.58 Total: -97.18 kcal Atomic # 8 Polarization: -91.05 SS G_CDS: -4.31 Total: -95.36 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 126.45 SS G_CDS: -1.66 Total: 124.79 kcal Total: -63.43 0.72 -62.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717751494.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.287 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds