Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.09002 * 108.85458 * 28.56159 * 3 2 1 5 5 C 1.54068 * 108.88103 * 270.00102 * 3 2 1 6 6 C 1.54061 * 112.81996 * 197.50732 * 5 3 2 7 7 C 1.50466 * 112.49774 * 318.28121 * 6 5 3 8 8 C 1.54243 * 108.51755 * 94.15370 * 7 6 5 9 9 H 1.09006 * 108.89027 * 40.76376 * 8 7 6 10 10 N 1.46899 * 108.89425 * 159.25057 * 8 7 6 11 11 C 1.46901 * 111.00290 * 274.99738 * 10 8 7 12 12 C 1.52998 * 109.47237 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47038 * 65.00680 * 12 11 10 14 14 C 1.42897 * 114.00360 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47657 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99619 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00301 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00075 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47478 * 89.99829 * 19 17 15 21 21 H 1.48499 * 109.47426 * 210.00031 * 19 17 15 22 22 H 1.48507 * 109.47295 * 329.99762 * 19 17 15 23 23 C 1.45536 * 112.41049 * 280.01058 * 8 7 6 24 24 C 1.50472 * 108.87675 * 147.02510 * 3 2 1 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 28 28 H 1.09003 * 108.80866 * 318.36999 * 5 3 2 29 29 H 1.09001 * 108.81111 * 76.64025 * 5 3 2 30 30 H 1.09001 * 108.87820 * 79.06214 * 6 5 3 31 31 H 1.09008 * 108.87324 * 197.60662 * 6 5 3 32 32 H 1.09001 * 109.63425 * 213.86246 * 7 6 5 33 33 H 1.08997 * 109.63262 * 334.44816 * 7 6 5 34 34 H 1.00904 * 110.99555 * 151.05381 * 10 8 7 35 35 H 1.09001 * 109.47551 * 300.00727 * 11 10 8 36 36 H 1.09001 * 109.46837 * 60.00688 * 11 10 8 37 37 H 1.08999 * 109.47045 * 185.00555 * 12 11 10 38 38 H 1.08998 * 109.47600 * 305.00506 * 12 11 10 39 39 H 1.09004 * 109.46768 * 299.99608 * 14 13 12 40 40 H 1.09000 * 109.47209 * 59.99206 * 14 13 12 41 41 H 0.97002 * 119.99594 * 180.02562 * 18 17 15 42 42 H 1.09001 * 108.89807 * 182.68764 * 23 8 7 43 43 H 1.09007 * 108.89415 * 301.27793 * 23 8 7 44 44 H 1.09005 * 109.63040 * 334.64127 * 24 3 2 45 45 H 1.09006 * 109.62667 * 95.21651 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3258 1.9957 0.4932 5 6 2.2130 1.7610 -1.4578 6 6 3.2030 2.9345 -1.5849 7 6 3.0065 3.9722 -0.5132 8 6 3.9684 3.6614 0.6518 9 1 4.9311 3.3550 0.2425 10 7 4.1597 4.8805 1.4489 11 6 5.2177 5.7234 0.8762 12 6 5.3877 6.9802 1.7320 13 8 5.8587 6.6124 3.0301 14 6 6.0515 7.7189 3.9136 15 6 6.5458 7.2177 5.2461 16 1 6.6972 6.1599 5.4027 17 6 6.8049 8.1095 6.2651 18 7 6.6210 9.3977 6.0741 19 14 7.4183 7.4883 7.9165 20 1 8.9028 7.4475 7.9097 21 1 6.9531 8.4001 8.9923 22 1 6.8868 6.1232 8.1604 23 6 3.4672 2.6053 1.5186 24 6 3.2994 1.2644 0.7749 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.5886 0.9194 -2.0399 29 1 1.2504 2.0671 -1.8675 30 1 4.2196 2.5470 -1.5185 31 1 3.0684 3.4054 -2.5587 32 1 3.2266 4.9609 -0.9159 33 1 1.9771 3.9399 -0.1565 34 1 4.3587 4.6551 2.4121 35 1 6.1551 5.1675 0.8575 36 1 4.9445 6.0094 -0.1395 37 1 6.1090 7.6468 1.2593 38 1 4.4285 7.4895 1.8244 39 1 6.7863 8.4012 3.4863 40 1 5.1058 8.2431 4.0511 41 1 6.8036 10.0251 6.7910 42 1 4.1644 2.4659 2.3448 43 1 2.5001 2.9077 1.9205 44 1 3.2675 0.4474 1.4958 45 1 4.1343 1.1191 0.0893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718299748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = -112.716034 kcal Electronic energy + Delta-G solvation = -21256.211441 eV Core-core repulsion = 18079.997070 eV Total energy + Delta-G solvation = -3176.214371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89417 -37.79030 -36.69935 -34.49815 -32.74276 -32.31372 -30.67494 -27.96088 -26.87176 -26.57217 -24.50815 -23.68930 -22.33999 -21.25961 -20.53973 -19.64361 -16.99154 -16.49638 -16.19018 -15.85314 -15.63013 -15.26238 -15.00291 -14.52071 -14.34366 -14.11260 -13.87701 -13.65610 -13.22530 -13.12197 -12.58200 -12.31083 -12.07757 -12.04146 -11.72647 -11.51495 -11.28973 -11.09236 -11.00110 -10.92945 -10.81604 -10.70141 -10.48087 -10.43746 -10.36027 -9.98453 -9.71764 -9.10515 -8.82144 -8.18916 -8.16441 -6.10884 -4.12702 3.30070 3.35114 3.40270 3.51124 4.18102 4.34932 4.47815 4.55882 4.84484 4.90654 4.96845 5.02658 5.04983 5.10944 5.15245 5.19908 5.25226 5.25590 5.36909 5.42142 5.53134 5.64047 5.69367 5.73321 5.76815 5.85300 5.92928 6.01761 6.06687 6.09529 6.13927 6.22071 6.23256 6.33390 6.39271 6.99568 7.11877 7.27406 7.44400 7.69183 7.79008 8.15597 8.58223 9.00518 9.52187 11.00664 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.003043 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.498134 B = 9200.302799 C = 9917.014880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.390 6.390 3 C 0.091 3.909 4 H 0.061 0.939 5 C -0.136 4.136 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.088 3.912 9 H 0.040 0.960 10 N -0.687 5.687 11 C 0.067 3.933 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.197 3.803 15 C -0.515 4.515 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.123 4.123 24 C -0.112 4.112 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.355 0.645 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -15.141 -15.537 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C 0.033 3.967 4 H 0.079 0.921 5 C -0.174 4.174 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.021 4.021 9 H 0.058 0.942 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.553 4.553 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.160 4.160 24 C -0.150 4.150 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.176 0.824 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.555 -14.962 -15.680 24.107 hybrid contribution 0.823 -0.046 0.976 1.277 sum -9.732 -15.008 -14.705 23.155 Atomic orbital electron populations 1.22768 0.81464 1.02464 0.99922 1.87944 1.19396 1.28497 1.95112 1.22064 0.95357 0.83982 0.95248 0.92083 1.22381 0.99802 0.98479 0.96738 1.21287 0.99433 0.95512 0.99177 1.21365 0.99894 0.98519 0.94729 1.20444 0.97641 0.89723 0.94335 0.94213 1.60573 1.46850 1.17692 1.06921 1.21983 0.92497 0.94288 0.97465 1.22298 0.97868 0.95205 0.86248 1.87781 1.86588 1.36029 1.21539 1.20169 0.95164 0.84461 0.87901 1.21052 1.44219 0.94363 0.95642 0.91637 1.24952 0.95642 0.94717 0.99233 1.69968 1.48901 1.01411 1.33483 0.86340 0.78959 0.78733 0.82469 1.20503 1.21070 1.19625 1.20657 1.02979 0.93818 0.98587 1.21390 0.96606 0.97722 0.99329 0.89917 0.94012 0.94242 0.91387 0.92405 0.91910 0.92006 0.91306 0.91564 0.82444 0.94864 0.90789 0.94263 0.93608 0.97859 0.97637 0.92658 0.91295 0.90993 0.90369 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.79 101.05 1.09 1.32 16 2 O -0.39 -4.08 10.18 -35.23 -0.36 -4.43 16 3 C 0.09 0.87 2.12 -27.44 -0.06 0.81 16 4 H 0.06 0.59 6.21 -51.93 -0.32 0.26 16 5 C -0.14 -1.18 5.45 -25.62 -0.14 -1.32 16 6 C -0.12 -1.01 5.31 -27.44 -0.15 -1.16 16 7 C -0.11 -1.10 5.17 -27.35 -0.14 -1.24 16 8 C 0.09 1.03 2.02 -70.58 -0.14 0.89 16 9 H 0.04 0.48 7.06 -51.93 -0.37 0.11 16 10 N -0.69 -10.06 6.28 -109.79 -0.69 -10.75 16 11 C 0.07 1.01 5.85 -3.82 -0.02 0.99 16 12 C 0.06 1.16 6.28 37.16 0.23 1.39 16 13 O -0.40 -9.55 9.85 -35.23 -0.35 -9.90 16 14 C 0.20 5.45 5.69 36.01 0.20 5.65 16 15 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16 16 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 19 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.12 -1.33 4.48 -29.60 -0.13 -1.47 16 24 C -0.11 -1.11 5.32 -27.34 -0.15 -1.25 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.30 8.07 -51.93 -0.42 -0.12 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.56 6.63 -51.93 -0.34 0.21 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.75 7.22 -51.93 -0.37 0.37 16 33 H 0.07 0.70 6.97 -51.93 -0.36 0.33 16 34 H 0.36 5.82 7.69 -39.29 -0.30 5.51 16 35 H 0.03 0.51 8.04 -51.93 -0.42 0.10 16 36 H 0.07 0.96 7.31 -51.93 -0.38 0.58 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 0.79 7.93 -51.93 -0.41 0.38 16 43 H 0.07 0.80 7.46 -51.93 -0.39 0.42 16 44 H 0.08 0.79 7.98 -51.93 -0.41 0.37 16 45 H 0.07 0.70 6.98 -51.93 -0.36 0.33 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -30.92 348.76 -8.46 -39.37 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.21 Total: -0.72 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 0.18 Total: -9.38 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.05 Total: -37.07 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.71 Total: -14.33 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.92 -8.46 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718299748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.342 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds