Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.09002 * 108.85458 * 28.56159 * 3 2 1 5 5 C 1.54068 * 108.88103 * 270.00102 * 3 2 1 6 6 C 1.54061 * 112.81996 * 197.50732 * 5 3 2 7 7 C 1.50466 * 112.49774 * 318.28121 * 6 5 3 8 8 C 1.54243 * 108.51755 * 94.15370 * 7 6 5 9 9 H 1.09006 * 108.89027 * 40.76376 * 8 7 6 10 10 N 1.46899 * 108.89425 * 159.25057 * 8 7 6 11 11 C 1.46901 * 111.00290 * 274.99738 * 10 8 7 12 12 C 1.52998 * 109.47237 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47038 * 65.00680 * 12 11 10 14 14 C 1.42897 * 114.00360 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47657 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99619 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00301 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99728 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00075 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47478 * 89.99829 * 19 17 15 21 21 H 1.48499 * 109.47426 * 210.00031 * 19 17 15 22 22 H 1.48507 * 109.47295 * 329.99762 * 19 17 15 23 23 C 1.45536 * 112.41049 * 280.01058 * 8 7 6 24 24 C 1.50472 * 108.87675 * 147.02510 * 3 2 1 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 28 28 H 1.09003 * 108.80866 * 318.36999 * 5 3 2 29 29 H 1.09001 * 108.81111 * 76.64025 * 5 3 2 30 30 H 1.09001 * 108.87820 * 79.06214 * 6 5 3 31 31 H 1.09008 * 108.87324 * 197.60662 * 6 5 3 32 32 H 1.09001 * 109.63425 * 213.86246 * 7 6 5 33 33 H 1.08997 * 109.63262 * 334.44816 * 7 6 5 34 34 H 1.00904 * 110.99555 * 151.05381 * 10 8 7 35 35 H 1.09001 * 109.47551 * 300.00727 * 11 10 8 36 36 H 1.09001 * 109.46837 * 60.00688 * 11 10 8 37 37 H 1.08999 * 109.47045 * 185.00555 * 12 11 10 38 38 H 1.08998 * 109.47600 * 305.00506 * 12 11 10 39 39 H 1.09004 * 109.46768 * 299.99608 * 14 13 12 40 40 H 1.09000 * 109.47209 * 59.99206 * 14 13 12 41 41 H 0.97002 * 119.99594 * 180.02562 * 18 17 15 42 42 H 1.09001 * 108.89807 * 182.68764 * 23 8 7 43 43 H 1.09007 * 108.89415 * 301.27793 * 23 8 7 44 44 H 1.09005 * 109.63040 * 334.64127 * 24 3 2 45 45 H 1.09006 * 109.62667 * 95.21651 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3258 1.9957 0.4932 5 6 2.2130 1.7610 -1.4578 6 6 3.2030 2.9345 -1.5849 7 6 3.0065 3.9722 -0.5132 8 6 3.9684 3.6614 0.6518 9 1 4.9311 3.3550 0.2425 10 7 4.1597 4.8805 1.4489 11 6 5.2177 5.7234 0.8762 12 6 5.3877 6.9802 1.7320 13 8 5.8587 6.6124 3.0301 14 6 6.0515 7.7189 3.9136 15 6 6.5458 7.2177 5.2461 16 1 6.6972 6.1599 5.4027 17 6 6.8049 8.1095 6.2651 18 7 6.6210 9.3977 6.0741 19 14 7.4183 7.4883 7.9165 20 1 8.9028 7.4475 7.9097 21 1 6.9531 8.4001 8.9923 22 1 6.8868 6.1232 8.1604 23 6 3.4672 2.6053 1.5186 24 6 3.2994 1.2644 0.7749 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.5886 0.9194 -2.0399 29 1 1.2504 2.0671 -1.8675 30 1 4.2196 2.5470 -1.5185 31 1 3.0684 3.4054 -2.5587 32 1 3.2266 4.9609 -0.9159 33 1 1.9771 3.9399 -0.1565 34 1 4.3587 4.6551 2.4121 35 1 6.1551 5.1675 0.8575 36 1 4.9445 6.0094 -0.1395 37 1 6.1090 7.6468 1.2593 38 1 4.4285 7.4895 1.8244 39 1 6.7863 8.4012 3.4863 40 1 5.1058 8.2431 4.0511 41 1 6.8036 10.0251 6.7910 42 1 4.1644 2.4659 2.3448 43 1 2.5001 2.9077 1.9205 44 1 3.2675 0.4474 1.4958 45 1 4.1343 1.1191 0.0893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718299748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = -133.409103 kcal Electronic energy + Delta-G solvation = -21257.108759 eV Core-core repulsion = 18079.997070 eV Total energy + Delta-G solvation = -3177.111690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73249 -38.96354 -38.15850 -35.65826 -34.80924 -33.20350 -31.76888 -29.63035 -28.23384 -27.50720 -25.40772 -24.57464 -24.46677 -22.60113 -21.45834 -20.39754 -18.64721 -17.76075 -17.56051 -17.02123 -16.82226 -16.61255 -16.28783 -15.99564 -15.43184 -15.31375 -14.88453 -14.80088 -14.47956 -14.13620 -13.85565 -13.49010 -13.30870 -13.11344 -12.93570 -12.79839 -12.73789 -12.54548 -12.41472 -12.16702 -11.98946 -11.88673 -11.77287 -11.46645 -11.31566 -11.25955 -11.17544 -10.87638 -10.42926 -10.23643 -9.33821 -8.32777 -6.45312 1.39779 1.42591 1.54656 2.34182 2.80289 3.01150 3.15096 3.22484 3.65588 3.76988 4.05420 4.14033 4.19928 4.23201 4.30605 4.33973 4.42304 4.43034 4.51333 4.53817 4.56990 4.63696 4.75145 4.78560 4.82631 4.88802 4.92213 4.97545 5.01626 5.04948 5.17255 5.18135 5.25484 5.27910 5.31633 5.39544 5.51706 5.54103 5.95128 6.16538 6.31294 6.43461 6.52727 6.81063 7.26721 8.79659 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.003043 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.498134 B = 9200.302799 C = 9917.014880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.101 4.101 8 C 0.091 3.909 9 H 0.041 0.959 10 N -0.696 5.696 11 C 0.077 3.923 12 C 0.054 3.946 13 O -0.408 6.408 14 C 0.212 3.788 15 C -0.548 4.548 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.264 1.264 23 C -0.118 4.118 24 C -0.106 4.106 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.342 0.658 35 H 0.031 0.969 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.043 0.957 39 H -0.015 1.015 40 H -0.016 1.016 41 H 0.271 0.729 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 -16.231 -15.917 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.169 4.169 6 C -0.149 4.149 7 C -0.140 4.140 8 C -0.018 4.018 9 H 0.059 0.941 10 N -0.328 5.328 11 C -0.052 4.052 12 C -0.023 4.023 13 O -0.328 6.328 14 C 0.136 3.864 15 C -0.585 4.585 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.188 1.188 23 C -0.156 4.156 24 C -0.145 4.145 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.049 0.951 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.725 -16.061 -16.097 25.142 hybrid contribution 0.814 0.303 1.017 1.337 sum -9.911 -15.758 -15.081 23.958 Atomic orbital electron populations 1.22934 0.80148 1.03573 1.00509 1.87910 1.20929 1.28839 1.95255 1.22058 0.94965 0.83853 0.95812 0.92308 1.22333 1.00208 0.98375 0.95995 1.21236 0.99445 0.95085 0.99132 1.21319 0.99248 0.98929 0.94455 1.20535 0.98162 0.88676 0.94472 0.94102 1.60648 1.46433 1.19177 1.06542 1.21931 0.92814 0.92639 0.97795 1.22611 0.97653 0.97602 0.84450 1.87747 1.86882 1.34814 1.23381 1.19786 0.93320 0.84878 0.88368 1.21389 1.45582 0.94533 0.97013 0.91923 1.25980 0.95154 0.94764 1.03442 1.70076 1.49123 1.02738 1.35115 0.85172 0.78731 0.78482 0.76958 1.19305 1.19956 1.18779 1.20590 1.02361 0.94276 0.98324 1.21321 0.97164 0.96723 0.99242 0.88648 0.93777 0.93292 0.91336 0.91606 0.91912 0.90690 0.91576 0.91758 0.83919 0.95055 0.87897 0.93467 0.93917 0.99770 0.99796 0.92041 0.92234 0.91477 0.90725 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.79 113.37 1.22 1.56 16 2 O -0.41 -8.03 10.18 -148.98 -1.52 -9.55 16 3 C 0.09 1.61 2.12 30.14 0.06 1.68 16 4 H 0.06 1.06 6.21 -2.39 -0.01 1.05 16 5 C -0.13 -2.01 5.45 31.31 0.17 -1.84 16 6 C -0.11 -1.70 5.31 30.13 0.16 -1.54 16 7 C -0.10 -1.92 5.17 30.20 0.16 -1.76 16 8 C 0.09 2.03 2.02 43.06 0.09 2.11 16 9 H 0.04 0.92 7.06 -2.38 -0.02 0.91 16 10 N -0.70 -20.06 6.28 -501.28 -3.15 -23.21 16 11 C 0.08 2.27 5.85 86.30 0.50 2.77 16 12 C 0.05 2.03 6.28 71.98 0.45 2.48 16 13 O -0.41 -19.92 9.85 -148.98 -1.47 -21.39 16 14 C 0.21 12.05 5.69 71.24 0.41 12.45 16 15 C -0.55 -32.84 9.43 25.60 0.24 -32.60 16 16 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 19 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 C -0.12 -2.51 4.48 28.74 0.13 -2.38 16 24 C -0.11 -2.00 5.32 30.20 0.16 -1.84 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.58 8.07 -2.38 -0.02 0.56 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.98 6.63 -2.39 -0.02 0.96 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.07 1.30 7.22 -2.39 -0.02 1.28 16 33 H 0.06 1.25 6.97 -2.39 -0.02 1.23 16 34 H 0.34 11.33 7.69 -89.69 -0.69 10.64 16 35 H 0.03 0.94 8.04 -2.39 -0.02 0.92 16 36 H 0.10 2.44 7.31 -2.39 -0.02 2.43 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 43 H 0.07 1.49 7.46 -2.38 -0.02 1.47 16 44 H 0.07 1.46 7.98 -2.38 -0.02 1.44 16 45 H 0.08 1.37 6.98 -2.38 -0.02 1.35 16 Total: -1.00 -65.92 348.76 0.65 -65.27 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.25 Total: 16.64 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.22 Total: -18.14 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -2.86 Total: -79.41 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -2.98 Total: -30.94 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.92 0.65 -65.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718299748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.140 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds