Wall clock time and date at job start Mon Mar 30 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 O 1.42894 * 109.47376 * 120.00630 * 2 1 3 5 5 C 1.42897 * 114.00401 * 120.31266 * 4 2 1 6 6 C 1.52998 * 110.45930 * 294.77231 * 5 4 2 7 7 N 1.46895 * 109.46939 * 302.60117 * 6 5 4 8 8 C 1.46904 * 110.99756 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46926 * 35.00730 * 8 7 6 10 10 C 1.52992 * 109.47647 * 275.00424 * 8 7 6 11 11 C 1.53005 * 109.47012 * 155.00163 * 8 7 6 12 12 C 1.50703 * 109.47020 * 295.00210 * 11 8 7 13 13 H 1.07997 * 120.00084 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99904 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99781 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99999 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47395 * 90.00447 * 16 14 12 18 18 H 1.48501 * 109.46894 * 210.00290 * 16 14 12 19 19 H 1.48495 * 109.47238 * 330.00152 * 16 14 12 20 20 C 1.54508 * 110.50784 * 57.37969 * 5 4 2 21 21 C 1.54482 * 104.06569 * 118.78319 * 20 5 4 22 22 O 1.44423 * 104.80462 * 23.97403 * 21 20 5 23 23 C 1.44429 * 105.27408 * 319.49499 * 22 21 20 24 24 H 1.08995 * 109.46813 * 299.99516 * 1 2 3 25 25 H 1.08996 * 109.47294 * 59.99567 * 1 2 3 26 26 H 1.08999 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46875 * 240.00193 * 2 1 3 28 28 H 1.09002 * 109.47708 * 303.06079 * 3 2 1 29 29 H 1.08999 * 109.46851 * 63.06250 * 3 2 1 30 30 H 1.09001 * 109.47070 * 183.05835 * 3 2 1 31 31 H 1.09004 * 109.46881 * 182.60212 * 6 5 4 32 32 H 1.08999 * 109.47100 * 62.60590 * 6 5 4 33 33 H 1.00907 * 110.99775 * 56.05281 * 7 6 5 34 34 H 1.09000 * 109.47158 * 59.99544 * 10 8 7 35 35 H 1.08996 * 109.47533 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47208 * 300.00134 * 10 8 7 37 37 H 1.08997 * 109.46881 * 55.00237 * 11 8 7 38 38 H 1.08994 * 109.47136 * 175.00359 * 11 8 7 39 39 H 0.97006 * 120.00190 * 180.02562 * 15 14 12 40 40 H 1.08997 * 110.51030 * 237.42653 * 20 5 4 41 41 H 1.09000 * 110.51643 * 0.13246 * 20 5 4 42 42 H 1.08995 * 110.37408 * 142.80805 * 21 20 5 43 43 H 1.09001 * 110.37188 * 265.14497 * 21 20 5 44 44 H 1.08998 * 110.36645 * 281.67585 * 23 22 21 45 45 H 1.08999 * 110.37162 * 159.34095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.8214 -1.8138 0.8875 6 6 2.0004 -2.9001 0.1898 7 7 0.8537 -3.2644 1.0326 8 6 0.0404 -4.3071 0.3928 9 1 0.6895 -4.9860 -0.1603 10 6 -0.9566 -3.6579 -0.5692 11 6 -0.7209 -5.0895 1.4648 12 6 0.2596 -5.8287 2.3385 13 1 1.3197 -5.7481 2.1485 14 6 -0.1966 -6.6070 3.3811 15 7 -1.4875 -6.7048 3.6128 16 14 1.0187 -7.5226 4.4645 17 1 1.4107 -6.6597 5.6078 18 1 0.3870 -8.7654 4.9763 19 1 2.2246 -7.8709 3.6710 20 6 4.0356 -1.4121 0.0205 21 6 5.2568 -1.7658 0.8979 22 8 4.7789 -2.7860 1.8016 23 6 3.4527 -2.3627 2.1861 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.6326 1.9720 -0.8613 29 1 1.7222 1.9401 0.9162 30 1 3.1287 1.4429 -0.0548 31 1 2.6247 -3.7786 0.0262 32 1 1.6422 -2.5253 -0.7690 33 1 0.2943 -2.4537 1.2521 34 1 -0.4143 -3.1004 -1.3329 35 1 -1.5603 -4.4315 -1.0435 36 1 -1.6057 -2.9790 -0.0161 37 1 -1.3021 -4.3983 2.0751 38 1 -1.3911 -5.8035 0.9863 39 1 -1.8086 -7.2521 4.3466 40 1 4.0509 -1.9873 -0.9052 41 1 4.0155 -0.3434 -0.1932 42 1 6.0672 -2.1545 0.2813 43 1 5.5896 -0.8905 1.4557 44 1 3.5088 -1.5789 2.9415 45 1 2.8772 -3.2099 2.5591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722340916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:37 Heat of formation + Delta-G solvation = -103.560652 kcal Electronic energy + Delta-G solvation = -22836.491465 eV Core-core repulsion = 19660.674101 eV Total energy + Delta-G solvation = -3175.817364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24885 -37.61465 -36.38614 -33.32758 -32.50248 -31.22540 -30.29969 -28.06064 -27.37195 -27.12758 -24.74667 -23.04255 -22.40329 -21.48769 -19.95968 -19.49902 -17.29864 -16.27884 -16.13417 -15.62161 -15.01931 -14.85736 -14.54136 -14.43669 -14.32190 -13.70562 -13.49123 -13.17157 -12.78509 -12.49519 -12.42131 -12.29076 -12.20036 -11.79427 -11.69931 -11.61764 -11.43545 -11.28470 -11.16415 -10.87443 -10.78391 -10.57412 -10.44765 -10.35018 -9.98887 -9.62621 -9.58892 -9.15343 -8.91564 -8.19341 -7.53205 -5.81957 -3.79241 3.45341 3.50876 3.51001 3.55687 4.11696 4.44938 4.62861 4.66412 4.79180 4.91635 4.95567 5.02907 5.09100 5.17552 5.32757 5.46309 5.51394 5.54852 5.56313 5.64380 5.69284 5.73397 5.78555 5.81123 5.86099 5.87809 5.96292 6.02145 6.08351 6.10199 6.19239 6.41719 6.46227 6.63768 6.80528 7.05413 7.36464 7.59499 7.74107 8.05552 8.13298 8.23805 8.66131 9.26126 9.82104 11.30195 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.006042 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.998447 B = 4632.828993 C = 5695.775415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 C -0.161 4.161 4 O -0.359 6.359 5 C 0.092 3.908 6 C 0.047 3.953 7 N -0.657 5.657 8 C 0.089 3.911 9 H 0.063 0.937 10 C -0.180 4.180 11 C 0.034 3.966 12 C -0.486 4.486 13 H 0.059 0.941 14 C 0.050 3.950 15 N -0.905 5.905 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.275 1.275 20 C -0.185 4.185 21 C 0.047 3.953 22 O -0.368 6.368 23 C 0.063 3.937 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.020 0.980 33 H 0.337 0.663 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 15.297 -9.990 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 C -0.218 4.218 4 O -0.278 6.278 5 C 0.052 3.948 6 C -0.083 4.083 7 N -0.289 5.289 8 C -0.020 4.020 9 H 0.081 0.919 10 C -0.239 4.239 11 C -0.003 4.003 12 C -0.525 4.525 13 H 0.077 0.923 14 C -0.149 4.149 15 N -0.546 5.546 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.200 1.200 20 C -0.223 4.223 21 C -0.030 4.030 22 O -0.286 6.286 23 C -0.013 4.013 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.156 0.844 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.762 14.625 -9.230 19.387 hybrid contribution 0.039 0.210 -0.486 0.531 sum 8.800 14.835 -9.716 19.797 Atomic orbital electron populations 1.22191 0.94838 1.03075 1.02308 1.22041 0.94343 0.92730 0.88843 1.22149 1.01120 0.96066 1.02480 1.88001 1.67852 1.41534 1.30449 1.22989 0.89629 0.85968 0.96244 1.22474 0.94748 0.97446 0.93664 1.60469 1.10883 1.13423 1.44099 1.21810 0.93012 0.92417 0.94806 0.91860 1.22577 1.00537 1.00978 0.99785 1.19101 0.94831 0.94010 0.92388 1.21140 0.93344 1.25671 1.12304 0.92322 1.24994 0.94885 0.97243 0.97791 1.69968 1.12606 1.41103 1.30929 0.86651 0.81439 0.79162 0.81047 1.20863 1.21719 1.20030 1.23666 0.95968 1.02646 1.00038 1.23291 0.96285 0.91950 0.91473 1.89215 1.30445 1.44781 1.64198 1.23396 0.82367 1.01668 0.93891 0.91582 0.91900 0.91749 0.91983 0.91799 0.91689 0.92556 0.90032 0.96182 0.84358 0.94621 0.92446 0.93031 0.96531 0.96550 0.93416 0.90221 0.89772 0.89324 0.92408 0.91723 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.45 37.16 0.35 -1.49 16 2 C 0.08 0.87 2.11 -26.73 -0.06 0.81 16 3 C -0.16 -1.46 9.46 37.15 0.35 -1.11 16 4 O -0.36 -4.98 8.96 -35.23 -0.32 -5.30 16 5 C 0.09 1.29 0.79 -89.05 -0.07 1.22 16 6 C 0.05 0.73 4.04 -3.83 -0.02 0.71 16 7 N -0.66 -12.18 5.36 -106.73 -0.57 -12.75 16 8 C 0.09 1.78 2.53 -67.71 -0.17 1.61 16 9 H 0.06 1.31 7.80 -51.93 -0.41 0.90 16 10 C -0.18 -3.00 8.58 37.15 0.32 -2.68 16 11 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 12 C -0.49 -13.78 8.84 -34.44 -0.30 -14.08 16 13 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 16 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.18 -2.08 5.55 -25.16 -0.14 -2.22 16 21 C 0.05 0.55 7.63 37.94 0.29 0.84 16 22 O -0.37 -5.82 11.65 -35.23 -0.41 -6.23 16 23 C 0.06 1.01 6.85 37.93 0.26 1.27 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.81 5.88 -51.93 -0.31 0.51 16 27 H 0.06 0.67 5.93 -51.92 -0.31 0.36 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 6.85 -51.93 -0.36 0.13 16 31 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 32 H 0.02 0.29 6.27 -51.93 -0.33 -0.04 16 33 H 0.34 6.10 6.28 -39.29 -0.25 5.85 16 34 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.84 7.88 -51.93 -0.41 0.44 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 0.84 7.73 -51.93 -0.40 0.43 16 41 H 0.08 0.83 5.82 -51.93 -0.30 0.52 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.13 2.38 7.42 -51.93 -0.39 1.99 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -30.82 346.85 -7.79 -38.60 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.02 Total: 2.93 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 0.59 Total: -13.02 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.16 Total: -39.73 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.73 Total: -11.52 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.82 -7.79 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722340916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.960 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds