Wall clock time and date at job start Mon Mar 30 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 O 1.42894 * 109.47376 * 120.00630 * 2 1 3 5 5 C 1.42897 * 114.00401 * 120.31266 * 4 2 1 6 6 C 1.52998 * 110.45930 * 294.77231 * 5 4 2 7 7 N 1.46895 * 109.46939 * 302.60117 * 6 5 4 8 8 C 1.46904 * 110.99756 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46926 * 35.00730 * 8 7 6 10 10 C 1.52992 * 109.47647 * 275.00424 * 8 7 6 11 11 C 1.53005 * 109.47012 * 155.00163 * 8 7 6 12 12 C 1.50703 * 109.47020 * 295.00210 * 11 8 7 13 13 H 1.07997 * 120.00084 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99904 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99781 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99999 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47395 * 90.00447 * 16 14 12 18 18 H 1.48501 * 109.46894 * 210.00290 * 16 14 12 19 19 H 1.48495 * 109.47238 * 330.00152 * 16 14 12 20 20 C 1.54508 * 110.50784 * 57.37969 * 5 4 2 21 21 C 1.54482 * 104.06569 * 118.78319 * 20 5 4 22 22 O 1.44423 * 104.80462 * 23.97403 * 21 20 5 23 23 C 1.44429 * 105.27408 * 319.49499 * 22 21 20 24 24 H 1.08995 * 109.46813 * 299.99516 * 1 2 3 25 25 H 1.08996 * 109.47294 * 59.99567 * 1 2 3 26 26 H 1.08999 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46875 * 240.00193 * 2 1 3 28 28 H 1.09002 * 109.47708 * 303.06079 * 3 2 1 29 29 H 1.08999 * 109.46851 * 63.06250 * 3 2 1 30 30 H 1.09001 * 109.47070 * 183.05835 * 3 2 1 31 31 H 1.09004 * 109.46881 * 182.60212 * 6 5 4 32 32 H 1.08999 * 109.47100 * 62.60590 * 6 5 4 33 33 H 1.00907 * 110.99775 * 56.05281 * 7 6 5 34 34 H 1.09000 * 109.47158 * 59.99544 * 10 8 7 35 35 H 1.08996 * 109.47533 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47208 * 300.00134 * 10 8 7 37 37 H 1.08997 * 109.46881 * 55.00237 * 11 8 7 38 38 H 1.08994 * 109.47136 * 175.00359 * 11 8 7 39 39 H 0.97006 * 120.00190 * 180.02562 * 15 14 12 40 40 H 1.08997 * 110.51030 * 237.42653 * 20 5 4 41 41 H 1.09000 * 110.51643 * 0.13246 * 20 5 4 42 42 H 1.08995 * 110.37408 * 142.80805 * 21 20 5 43 43 H 1.09001 * 110.37188 * 265.14497 * 21 20 5 44 44 H 1.08998 * 110.36645 * 281.67585 * 23 22 21 45 45 H 1.08999 * 110.37162 * 159.34095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.8214 -1.8138 0.8875 6 6 2.0004 -2.9001 0.1898 7 7 0.8537 -3.2644 1.0326 8 6 0.0404 -4.3071 0.3928 9 1 0.6895 -4.9860 -0.1603 10 6 -0.9566 -3.6579 -0.5692 11 6 -0.7209 -5.0895 1.4648 12 6 0.2596 -5.8287 2.3385 13 1 1.3197 -5.7481 2.1485 14 6 -0.1966 -6.6070 3.3811 15 7 -1.4875 -6.7048 3.6128 16 14 1.0187 -7.5226 4.4645 17 1 1.4107 -6.6597 5.6078 18 1 0.3870 -8.7654 4.9763 19 1 2.2246 -7.8709 3.6710 20 6 4.0356 -1.4121 0.0205 21 6 5.2568 -1.7658 0.8979 22 8 4.7789 -2.7860 1.8016 23 6 3.4527 -2.3627 2.1861 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.6326 1.9720 -0.8613 29 1 1.7222 1.9401 0.9162 30 1 3.1287 1.4429 -0.0548 31 1 2.6247 -3.7786 0.0262 32 1 1.6422 -2.5253 -0.7690 33 1 0.2943 -2.4537 1.2521 34 1 -0.4143 -3.1004 -1.3329 35 1 -1.5603 -4.4315 -1.0435 36 1 -1.6057 -2.9790 -0.0161 37 1 -1.3021 -4.3983 2.0751 38 1 -1.3911 -5.8035 0.9863 39 1 -1.8086 -7.2521 4.3466 40 1 4.0509 -1.9873 -0.9052 41 1 4.0155 -0.3434 -0.1932 42 1 6.0672 -2.1545 0.2813 43 1 5.5896 -0.8905 1.4557 44 1 3.5088 -1.5789 2.9415 45 1 2.8772 -3.2099 2.5591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722340916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:37 Heat of formation + Delta-G solvation = -124.414574 kcal Electronic energy + Delta-G solvation = -22837.395759 eV Core-core repulsion = 19660.674101 eV Total energy + Delta-G solvation = -3176.721657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32474 -38.69508 -37.88316 -34.88971 -34.06023 -32.41890 -31.55399 -29.46826 -28.91502 -28.07762 -26.07594 -24.91430 -23.51660 -22.46961 -21.42489 -20.72374 -18.40757 -18.28764 -17.33214 -16.87235 -16.41066 -16.19774 -16.02999 -15.70962 -15.36736 -14.94129 -14.74535 -14.36222 -14.14455 -13.78914 -13.66026 -13.43229 -13.34488 -13.19943 -13.09652 -12.93240 -12.74667 -12.56752 -12.47914 -12.39820 -12.26416 -12.01979 -11.83880 -11.70324 -11.37753 -11.17772 -11.08615 -10.73038 -10.48708 -10.45056 -8.97780 -8.08343 -6.12319 1.41284 1.43065 1.53322 2.48324 2.52260 3.04559 3.23900 3.36230 3.60898 3.79809 3.84358 4.03674 4.14878 4.19887 4.22439 4.25187 4.32567 4.44607 4.52541 4.59557 4.62757 4.67653 4.74702 4.77527 4.82677 4.92501 4.92764 4.96485 4.98838 5.04209 5.11256 5.20699 5.27711 5.33114 5.37913 5.52443 5.68766 5.75574 5.91851 6.33081 6.39321 6.50099 6.74659 7.01594 7.53094 9.03867 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.006042 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.998447 B = 4632.828993 C = 5695.775415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 C -0.156 4.156 4 O -0.376 6.376 5 C 0.097 3.903 6 C 0.053 3.947 7 N -0.674 5.674 8 C 0.099 3.901 9 H 0.057 0.943 10 C -0.168 4.168 11 C 0.039 3.961 12 C -0.494 4.494 13 H 0.054 0.946 14 C -0.005 4.005 15 N -0.940 5.940 16 Si 0.953 3.047 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.268 1.268 20 C -0.174 4.174 21 C 0.041 3.959 22 O -0.393 6.393 23 C 0.063 3.937 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.339 0.661 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.051 0.949 37 H -0.011 1.011 38 H -0.008 1.008 39 H 0.258 0.742 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 16.847 -11.540 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 C -0.213 4.213 4 O -0.296 6.296 5 C 0.056 3.944 6 C -0.077 4.077 7 N -0.306 5.306 8 C -0.011 4.011 9 H 0.076 0.924 10 C -0.226 4.226 11 C 0.002 3.998 12 C -0.533 4.533 13 H 0.073 0.927 14 C -0.201 4.201 15 N -0.583 5.583 16 Si 0.779 3.221 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.212 4.212 21 C -0.035 4.035 22 O -0.313 6.313 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.007 0.993 38 H 0.010 0.990 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.383 16.189 -10.796 22.056 hybrid contribution -0.465 -0.237 -0.008 0.522 sum 9.918 15.952 -10.804 21.669 Atomic orbital electron populations 1.22204 0.95015 1.02097 1.03079 1.22265 0.94275 0.93784 0.88164 1.22119 1.01657 0.94549 1.03007 1.87994 1.68092 1.41315 1.32182 1.22814 0.90364 0.85721 0.95452 1.22443 0.93406 0.97578 0.94234 1.60276 1.11490 1.13326 1.45495 1.21465 0.93360 0.92743 0.93500 0.92449 1.22411 0.99796 1.00948 0.99492 1.18977 0.94252 0.93371 0.93211 1.21458 0.93567 1.25603 1.12666 0.92730 1.25814 0.96570 0.98329 0.99348 1.70090 1.14396 1.42093 1.31702 0.85628 0.79329 0.77953 0.79178 1.20484 1.21058 1.19271 1.23622 0.93887 1.04065 0.99668 1.23576 0.96963 0.91701 0.91300 1.89177 1.30215 1.46574 1.65290 1.23195 0.82698 1.00214 0.95269 0.92358 0.89638 0.93518 0.91098 0.89798 0.92489 0.91773 0.91485 0.94099 0.84144 0.91687 0.92445 0.93009 0.99298 0.98962 0.93334 0.89048 0.87740 0.87191 0.91084 0.91571 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.45 71.98 0.68 -2.67 16 2 C 0.07 1.42 2.11 30.59 0.06 1.48 16 3 C -0.16 -2.34 9.46 71.98 0.68 -1.66 16 4 O -0.38 -9.86 8.96 -148.98 -1.34 -11.19 16 5 C 0.10 2.58 0.79 -9.78 -0.01 2.57 16 6 C 0.05 1.59 4.04 86.30 0.35 1.94 16 7 N -0.67 -25.13 5.36 -491.58 -2.63 -27.76 16 8 C 0.10 4.01 2.53 44.91 0.11 4.12 16 9 H 0.06 2.38 7.80 -2.39 -0.02 2.36 16 10 C -0.17 -5.41 8.58 71.98 0.62 -4.79 16 11 C 0.04 2.09 4.65 29.85 0.14 2.23 16 12 C -0.49 -28.80 8.84 25.60 0.23 -28.57 16 13 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 14 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 15 N -0.94 -59.04 13.29 21.45 0.28 -58.75 16 16 Si 0.95 47.05 29.54 68.60 2.03 49.07 16 17 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 18 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 20 C -0.17 -3.39 5.55 31.61 0.18 -3.21 16 21 C 0.04 0.85 7.63 72.49 0.55 1.40 16 22 O -0.39 -12.17 11.65 -148.98 -1.74 -13.91 16 23 C 0.06 2.02 6.85 72.49 0.50 2.52 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.10 5.88 -2.39 -0.01 1.09 16 27 H 0.07 1.27 5.93 -2.38 -0.01 1.26 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.87 6.85 -2.39 -0.02 0.85 16 31 H 0.07 2.20 8.06 -2.39 -0.02 2.18 16 32 H 0.04 1.06 6.27 -2.39 -0.01 1.05 16 33 H 0.34 12.34 6.28 -89.69 -0.56 11.78 16 34 H 0.06 1.72 7.45 -2.39 -0.02 1.70 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.66 7.88 -2.39 -0.02 1.64 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 40 H 0.09 1.59 7.73 -2.39 -0.02 1.57 16 41 H 0.10 1.63 5.82 -2.39 -0.01 1.61 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.03 8.09 -2.39 -0.02 2.01 16 45 H 0.09 3.52 7.42 -2.39 -0.02 3.51 16 Total: -1.00 -68.10 346.85 1.54 -66.55 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.39 Total: 20.47 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.55 Total: -24.47 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.35 Total: -86.51 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -3.07 Total: -25.10 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -68.10 1.54 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722340916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.862 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds