Wall clock time and date at job start Mon Mar 30 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 O 1.42895 * 109.47057 * 119.99527 * 2 1 3 5 5 C 1.42903 * 113.99797 * 119.43403 * 4 2 1 6 6 C 1.53004 * 110.43688 * 300.59638 * 5 4 2 7 7 N 1.46903 * 109.46901 * 293.92027 * 6 5 4 8 8 C 1.46900 * 110.99925 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47069 * 325.00012 * 8 7 6 10 10 C 1.52993 * 109.47146 * 85.00280 * 8 7 6 11 11 C 1.53003 * 109.47011 * 205.00512 * 8 7 6 12 12 C 1.50704 * 109.47247 * 64.99556 * 11 8 7 13 13 H 1.07997 * 119.99856 * 0.02562 * 12 11 8 14 14 C 1.37877 * 119.99501 * 180.02562 * 12 11 8 15 15 N 1.31513 * 120.00575 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99735 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47309 * 89.99732 * 16 14 12 18 18 H 1.48501 * 109.47019 * 209.99860 * 16 14 12 19 19 H 1.48503 * 109.46926 * 329.99861 * 16 14 12 20 20 C 1.54808 * 110.48859 * 63.28109 * 5 4 2 21 21 C 1.54991 * 102.09482 * 97.79414 * 20 5 4 22 22 O 1.44386 * 103.48890 * 37.02611 * 21 20 5 23 23 C 1.43746 * 106.97366 * 319.93994 * 22 21 20 24 24 H 1.08995 * 109.47594 * 300.00055 * 1 2 3 25 25 H 1.09000 * 109.47222 * 60.00064 * 1 2 3 26 26 H 1.09000 * 109.46783 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47261 * 240.00375 * 2 1 3 28 28 H 1.09006 * 109.47054 * 55.59412 * 3 2 1 29 29 H 1.08999 * 109.47291 * 175.59590 * 3 2 1 30 30 H 1.09004 * 109.47075 * 295.59639 * 3 2 1 31 31 H 1.08997 * 109.47327 * 53.92107 * 6 5 4 32 32 H 1.08997 * 109.46809 * 173.92697 * 6 5 4 33 33 H 1.00896 * 111.00296 * 303.95618 * 7 6 5 34 34 H 1.09002 * 109.47072 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.47085 * 299.99732 * 10 8 7 36 36 H 1.08997 * 109.47356 * 59.99907 * 10 8 7 37 37 H 1.09000 * 109.47076 * 185.00219 * 11 8 7 38 38 H 1.09002 * 109.46764 * 305.00194 * 11 8 7 39 39 H 0.96992 * 120.00337 * 179.97438 * 15 14 12 40 40 H 1.09003 * 110.91344 * 215.99619 * 20 5 4 41 41 H 1.09006 * 110.90334 * 339.59708 * 20 5 4 42 42 H 1.08998 * 110.62230 * 278.53008 * 21 20 5 43 43 H 1.08998 * 110.62435 * 155.52631 * 21 20 5 44 44 H 1.08998 * 109.87632 * 267.08876 * 23 22 21 45 45 H 1.08994 * 109.87653 * 145.93768 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.8049 -1.8253 0.8877 6 6 2.0054 -2.8455 0.0748 7 7 0.9027 -3.3676 0.8930 8 6 0.1117 -4.3528 0.1435 9 1 0.0686 -4.0616 -0.9059 10 6 0.7662 -5.7304 0.2642 11 6 -1.3063 -4.4099 0.7155 12 6 -1.9940 -3.0887 0.4862 13 1 -1.4721 -2.2885 -0.0175 14 6 -3.2895 -2.9017 0.9195 15 7 -3.9252 -3.8763 1.5324 16 14 -4.1423 -1.2643 0.6347 17 1 -4.8470 -1.2938 -0.6722 18 1 -5.1249 -1.0223 1.7215 19 1 -3.1330 -0.1750 0.6282 20 6 4.0956 -1.4203 0.1350 21 6 5.1350 -1.3577 1.2831 22 8 4.7507 -2.4502 2.1453 23 6 3.3142 -2.4587 2.1970 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.6136 1.9787 0.8479 29 1 3.1271 1.4436 0.0789 30 1 1.7425 1.9331 -0.9268 31 1 1.6009 -2.3641 -0.8155 32 1 2.6586 -3.6665 -0.2209 33 1 1.2474 -3.7618 1.7554 34 1 0.1790 -6.4615 -0.2916 35 1 1.7763 -5.6897 -0.1433 36 1 0.8092 -6.0216 1.3136 37 1 -1.8666 -5.2023 0.2192 38 1 -1.2586 -4.6138 1.7852 39 1 -4.8364 -3.7445 1.8375 40 1 4.3719 -2.1773 -0.5989 41 1 3.9800 -0.4453 -0.3386 42 1 5.0650 -0.4077 1.8130 43 1 6.1430 -1.5096 0.8972 44 1 2.9706 -1.8734 3.0500 45 1 2.9523 -3.4836 2.2782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722340919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:43 Heat of formation + Delta-G solvation = -98.412896 kcal Electronic energy + Delta-G solvation = -23017.082023 eV Core-core repulsion = 19841.487883 eV Total energy + Delta-G solvation = -3175.594140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24898 -37.44420 -36.47571 -33.30299 -32.33943 -31.17266 -30.39878 -28.04807 -27.31623 -26.77797 -24.91715 -23.11057 -22.39005 -21.22667 -19.82774 -19.54436 -17.41461 -16.44488 -16.12102 -15.53235 -15.03514 -14.76523 -14.48426 -14.33466 -14.18200 -13.85396 -13.08445 -12.90886 -12.83122 -12.64552 -12.22775 -12.21190 -11.89124 -11.77189 -11.67349 -11.54503 -11.42862 -11.33455 -11.23250 -10.82549 -10.71701 -10.49491 -10.29147 -10.14556 -9.99897 -9.69309 -9.45815 -9.09792 -8.80188 -8.21882 -7.54949 -5.84274 -3.81274 3.40258 3.47315 3.51237 3.69678 3.90698 4.41545 4.59185 4.61757 4.82127 4.98782 5.14199 5.16541 5.20594 5.37780 5.41638 5.53230 5.54942 5.56761 5.61304 5.70964 5.77070 5.78320 5.83605 5.90100 5.95527 6.00219 6.05302 6.11501 6.17888 6.24286 6.43102 6.53622 6.62373 6.73146 6.98485 7.05784 7.53118 7.57919 7.75233 8.02945 8.08893 8.20104 8.64697 9.24464 9.79566 11.28063 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.006603 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.682068 B = 4239.748682 C = 5364.971499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 C -0.162 4.162 4 O -0.348 6.348 5 C 0.093 3.907 6 C 0.042 3.958 7 N -0.653 5.653 8 C 0.089 3.911 9 H 0.062 0.938 10 C -0.181 4.181 11 C 0.033 3.967 12 C -0.486 4.486 13 H 0.065 0.935 14 C 0.051 3.949 15 N -0.904 5.904 16 Si 0.882 3.118 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.270 1.270 20 C -0.184 4.184 21 C 0.052 3.948 22 O -0.378 6.378 23 C 0.061 3.939 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.330 0.670 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.256 0.744 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.364 5.424 -3.752 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.030 3.970 3 C -0.219 4.219 4 O -0.267 6.267 5 C 0.052 3.948 6 C -0.088 4.088 7 N -0.284 5.284 8 C -0.020 4.020 9 H 0.081 0.919 10 C -0.240 4.240 11 C -0.004 4.004 12 C -0.524 4.524 13 H 0.083 0.917 14 C -0.148 4.148 15 N -0.546 5.546 16 Si 0.710 3.290 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.195 1.195 20 C -0.223 4.223 21 C -0.025 4.025 22 O -0.297 6.297 23 C -0.015 4.015 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.857 5.835 -3.515 17.259 hybrid contribution -0.137 0.237 -0.518 0.586 sum 15.720 6.073 -4.033 17.328 Atomic orbital electron populations 1.22329 0.93584 1.06071 1.01061 1.22000 0.95297 0.91585 0.88156 1.22180 1.00732 0.96788 1.02200 1.88019 1.68266 1.39744 1.30654 1.22798 0.89653 0.87348 0.94974 1.22538 0.93100 0.96142 0.97016 1.60544 1.21660 1.40175 1.05995 1.21818 0.96177 0.86676 0.97369 0.91948 1.22565 0.99492 1.00483 1.01460 1.19110 0.87861 0.97221 0.96200 1.21231 0.96830 0.98593 1.35776 0.91720 1.24976 0.97759 0.96148 0.95934 1.69957 1.11977 1.31871 1.40745 0.86750 0.79578 0.85261 0.77386 1.21220 1.21666 1.19456 1.23823 0.96107 1.03252 0.99071 1.23459 0.98344 0.90779 0.89894 1.88877 1.20652 1.51269 1.68945 1.23118 0.80262 1.01422 0.96742 0.92433 0.93041 0.88134 0.92368 0.91965 0.92916 0.91946 0.90629 0.95268 0.85078 0.92459 0.94494 0.92984 0.96582 0.96492 0.93428 0.89898 0.89456 0.91938 0.89186 0.90547 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.56 37.16 0.36 -2.64 16 2 C 0.09 1.25 1.97 -26.73 -0.05 1.20 16 3 C -0.16 -1.91 9.44 37.16 0.35 -1.56 16 4 O -0.35 -5.49 9.58 -35.23 -0.34 -5.83 16 5 C 0.09 1.28 0.74 -89.09 -0.07 1.22 16 6 C 0.04 0.63 4.24 -3.82 -0.02 0.61 16 7 N -0.65 -11.68 5.91 -106.73 -0.63 -12.31 16 8 C 0.09 1.73 2.53 -67.71 -0.17 1.56 16 9 H 0.06 1.24 7.80 -51.93 -0.41 0.84 16 10 C -0.18 -2.98 9.16 37.15 0.34 -2.64 16 11 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 12 C -0.49 -13.25 8.84 -34.44 -0.30 -13.55 16 13 H 0.06 1.71 5.03 -52.49 -0.26 1.44 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 16 Si 0.88 21.88 29.54 -169.99 -5.02 16.85 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.18 -2.04 5.95 -24.73 -0.15 -2.19 16 21 C 0.05 0.56 7.72 38.21 0.29 0.86 16 22 O -0.38 -5.20 11.52 -35.23 -0.41 -5.60 16 23 C 0.06 0.85 6.76 37.73 0.25 1.11 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.10 2.06 5.42 -51.93 -0.28 1.78 16 27 H 0.06 0.78 5.68 -51.93 -0.29 0.48 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.55 7.22 -51.93 -0.38 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 32 H 0.03 0.41 7.33 -51.93 -0.38 0.03 16 33 H 0.33 5.66 6.41 -39.29 -0.25 5.41 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 36 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 0.85 7.80 -51.93 -0.41 0.44 16 41 H 0.09 0.89 5.93 -51.93 -0.31 0.58 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.11 7.97 -51.93 -0.41 0.70 16 45 H 0.09 1.26 6.17 -51.93 -0.32 0.94 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -30.16 344.45 -7.64 -37.80 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.78 Total: 4.46 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 0.61 Total: -13.97 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.11 Total: -38.91 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.74 Total: -11.43 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.16 -7.64 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722340919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.613 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds