Wall clock time and date at job start Mon Mar 30 2020 04:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.48150 * 2 1 4 4 C 1.53100 * 109.48598 * 240.05126 * 2 1 3 5 5 C 1.53174 * 109.15965 * 182.49778 * 4 2 1 6 6 H 1.08999 * 109.54700 * 296.93954 * 5 4 2 7 7 C 1.53000 * 109.54722 * 176.75949 * 5 4 2 8 8 N 1.46901 * 109.46769 * 65.17664 * 7 5 4 9 9 C 1.46906 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.47283 * 65.00014 * 10 9 8 12 12 C 1.42903 * 114.00050 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47521 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99409 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00210 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00070 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00065 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47426 * 90.00039 * 17 15 13 19 19 H 1.48498 * 109.46957 * 210.00059 * 17 15 13 20 20 H 1.48496 * 109.46986 * 329.99743 * 17 15 13 21 21 C 1.53181 * 109.10817 * 56.84713 * 5 4 2 22 22 C 1.53084 * 109.16492 * 303.06419 * 21 5 4 23 23 H 1.08992 * 109.48658 * 297.61405 * 22 21 5 24 24 C 1.53001 * 109.48053 * 177.58700 * 22 21 5 25 25 O 1.42906 * 109.47696 * 120.02289 * 2 1 3 26 26 H 1.09000 * 109.47294 * 299.98146 * 1 2 3 27 27 H 1.09005 * 109.46805 * 59.97803 * 1 2 3 28 28 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.59707 * 62.55268 * 4 2 1 30 30 H 1.09002 * 109.45324 * 302.36032 * 4 2 1 31 31 H 1.09002 * 109.47398 * 185.17959 * 7 5 4 32 32 H 1.09001 * 109.47194 * 305.18139 * 7 5 4 33 33 H 1.00899 * 111.00283 * 303.95539 * 8 7 5 34 34 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 35 35 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 36 36 H 1.08998 * 109.47192 * 185.00503 * 10 9 8 37 37 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 38 38 H 1.08999 * 109.47093 * 300.00510 * 12 11 10 39 39 H 1.09001 * 109.47294 * 59.99816 * 12 11 10 40 40 H 0.96993 * 120.00081 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.52159 * 62.97591 * 21 5 4 42 42 H 1.08998 * 109.52181 * 183.09365 * 21 5 4 43 43 H 1.09007 * 109.46828 * 60.00681 * 24 22 21 44 44 H 1.09001 * 109.47264 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47254 * 300.00301 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7205 -1.2506 5 6 3.5711 -0.7710 -1.2120 6 1 3.9703 0.2428 -1.2414 7 6 4.0878 -1.5598 -2.4168 8 7 3.7584 -0.8373 -3.6528 9 6 4.2398 -1.5670 -4.8334 10 6 3.8796 -0.7851 -6.0981 11 8 4.5858 0.4571 -6.1075 12 6 4.3194 1.2685 -7.2533 13 6 5.1118 2.5469 -7.1589 14 1 5.7543 2.7223 -6.3087 15 6 5.0157 3.4928 -8.1573 16 7 5.7077 4.6082 -8.0751 17 14 3.9028 3.1903 -9.6267 18 1 2.5457 3.7190 -9.3370 19 1 4.4585 3.8797 -10.8187 20 1 3.8194 1.7317 -9.8924 21 6 4.0176 -1.4601 0.0813 22 6 3.4307 -0.7092 1.2792 23 1 3.8193 0.3090 1.2960 24 6 3.8225 -1.4263 2.5727 25 8 2.0064 -0.6741 1.1665 26 1 -0.3634 0.5135 0.8901 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7164 -0.1818 -2.1410 30 1 1.6431 -1.7352 -1.2727 31 1 5.1691 -1.6739 -2.3398 32 1 3.6190 -2.5437 -2.4352 33 1 2.7667 -0.6621 -3.7159 34 1 5.3221 -1.6815 -4.7734 35 1 3.7718 -2.5508 -4.8682 36 1 4.1570 -1.3675 -6.9767 37 1 2.8067 -0.5932 -6.1135 38 1 4.6062 0.7285 -8.1556 39 1 3.2556 1.5030 -7.2930 40 1 5.6398 5.2739 -8.7773 41 1 3.6613 -2.4902 0.0868 42 1 5.1058 -1.4508 0.1419 43 1 4.9089 -1.4538 2.6581 44 1 3.4042 -0.8918 3.4256 45 1 3.4334 -2.4443 2.5560 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724470343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:28 Heat of formation + Delta-G solvation = -114.537848 kcal Electronic energy + Delta-G solvation = -21147.648507 eV Core-core repulsion = 17971.355136 eV Total energy + Delta-G solvation = -3176.293371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94189 -37.41074 -36.11784 -33.91021 -33.54534 -32.50932 -30.29358 -28.92554 -27.31334 -26.62779 -24.78787 -22.11561 -21.80825 -21.49400 -21.26284 -20.19987 -16.89154 -16.70100 -16.16167 -15.91039 -15.64740 -15.28378 -14.84565 -14.55449 -14.25643 -13.93775 -13.68159 -13.53831 -12.91697 -12.72418 -12.68186 -12.47079 -12.29676 -12.21526 -12.15336 -11.96174 -11.78175 -11.41607 -11.11790 -10.98527 -10.90072 -10.76174 -10.67124 -10.46784 -10.29586 -9.83739 -9.51176 -9.13456 -8.80389 -8.42282 -8.21619 -6.08059 -4.06419 3.26167 3.32949 3.34491 3.49580 4.13423 4.38026 4.49057 4.58356 4.70118 4.71097 4.73912 4.99393 5.01826 5.16360 5.20873 5.23082 5.31892 5.33504 5.36045 5.47290 5.49955 5.53543 5.54247 5.65701 5.73143 5.79908 5.82113 5.86067 5.87783 5.89626 5.92326 6.03241 6.04693 6.19518 6.28342 6.63599 7.03365 7.13756 7.15132 7.51552 7.64039 8.08989 8.72484 9.05241 9.51640 11.05170 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.003134 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.695514 B = 8931.826775 C = 9145.109665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.059 0.941 4 C -0.146 4.146 5 C -0.090 4.090 6 H 0.085 0.915 7 C 0.068 3.932 8 N -0.676 5.676 9 C 0.065 3.935 10 C 0.061 3.939 11 O -0.365 6.365 12 C 0.167 3.833 13 C -0.515 4.515 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.876 3.124 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.143 4.143 22 C 0.087 3.913 23 H 0.058 0.942 24 C -0.144 4.144 25 O -0.381 6.381 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.000 1.000 39 H -0.004 1.004 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 -14.855 17.197 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.077 0.923 4 C -0.184 4.184 5 C -0.109 4.109 6 H 0.103 0.897 7 C -0.062 4.062 8 N -0.308 5.308 9 C -0.064 4.064 10 C -0.017 4.017 11 O -0.283 6.283 12 C 0.092 3.908 13 C -0.553 4.553 14 H 0.101 0.899 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.181 4.181 22 C 0.030 3.970 23 H 0.076 0.924 24 C -0.201 4.201 25 O -0.301 6.301 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.156 0.844 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.624 -14.296 17.400 23.776 hybrid contribution -1.194 -0.748 -1.420 2.001 sum -8.818 -15.045 15.981 23.653 Atomic orbital electron populations 1.21764 0.93203 1.02696 1.02484 1.22055 0.94832 0.95205 0.84886 0.92275 1.22299 0.95853 1.01539 0.98679 1.21242 0.95083 1.00939 0.93632 0.89699 1.21948 1.00776 0.94100 0.89333 1.60342 1.21161 1.48487 1.00810 1.21959 1.01456 0.93389 0.89600 1.22314 0.95579 0.88149 0.95705 1.88023 1.66943 1.28147 1.45233 1.20590 0.95202 0.90945 0.84082 1.20902 1.26625 0.99181 1.08570 0.89912 1.24774 0.95677 0.94784 0.97834 1.69879 1.41324 1.08087 1.34249 0.86847 0.81276 0.78842 0.82738 1.19986 1.20836 1.19187 1.22237 1.01200 1.00214 0.94438 1.22046 0.81365 0.98666 0.94959 0.92384 1.21761 1.01262 1.00982 0.96101 1.87893 1.20836 1.78156 1.43201 0.91993 0.90915 0.92042 0.90395 0.91513 0.90926 0.95852 0.84378 0.90237 0.94835 0.94039 0.94707 0.98236 0.98604 0.92431 0.91277 0.90736 0.91091 0.91972 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.56 37.15 0.36 -0.90 16 2 C 0.09 0.90 3.26 -26.68 -0.09 0.81 16 3 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.48 4.41 -26.59 -0.12 -1.60 16 5 C -0.09 -0.97 2.48 -90.44 -0.22 -1.19 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.07 0.79 5.15 -3.82 -0.02 0.77 16 8 N -0.68 -9.68 6.45 -113.78 -0.73 -10.42 16 9 C 0.07 0.94 6.07 -3.82 -0.02 0.92 16 10 C 0.06 1.07 6.22 37.16 0.23 1.30 16 11 O -0.36 -8.69 10.27 -35.23 -0.36 -9.05 16 12 C 0.17 4.34 4.76 36.01 0.17 4.51 16 13 C -0.51 -15.62 9.99 -34.44 -0.34 -15.97 16 14 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 17 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 21 C -0.14 -1.33 4.71 -26.59 -0.13 -1.45 16 22 C 0.09 0.84 3.26 -26.69 -0.09 0.75 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.14 -1.11 9.56 37.16 0.36 -0.76 16 25 O -0.38 -4.27 10.05 -35.23 -0.35 -4.63 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.80 6.84 -51.93 -0.36 0.45 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.34 4.50 7.07 -39.29 -0.28 4.22 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 39 H 0.00 -0.09 7.57 -51.93 -0.39 -0.49 16 40 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -32.77 355.46 -8.60 -41.37 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -8.60 Total: -1.56 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.01 Total: -10.80 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.04 Total: -37.68 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.72 Total: -13.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.77 -8.60 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724470343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.164 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds