Wall clock time and date at job start Mon Mar 30 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.48150 * 2 1 4 4 C 1.53100 * 109.48598 * 240.05126 * 2 1 3 5 5 C 1.53174 * 109.15965 * 182.49778 * 4 2 1 6 6 H 1.08999 * 109.54700 * 296.93954 * 5 4 2 7 7 C 1.53000 * 109.54722 * 176.75949 * 5 4 2 8 8 N 1.46901 * 109.46769 * 65.17664 * 7 5 4 9 9 C 1.46906 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.47283 * 65.00014 * 10 9 8 12 12 C 1.42903 * 114.00050 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47521 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99409 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00210 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00070 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00065 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47426 * 90.00039 * 17 15 13 19 19 H 1.48498 * 109.46957 * 210.00059 * 17 15 13 20 20 H 1.48496 * 109.46986 * 329.99743 * 17 15 13 21 21 C 1.53181 * 109.10817 * 56.84713 * 5 4 2 22 22 C 1.53084 * 109.16492 * 303.06419 * 21 5 4 23 23 H 1.08992 * 109.48658 * 297.61405 * 22 21 5 24 24 C 1.53001 * 109.48053 * 177.58700 * 22 21 5 25 25 O 1.42906 * 109.47696 * 120.02289 * 2 1 3 26 26 H 1.09000 * 109.47294 * 299.98146 * 1 2 3 27 27 H 1.09005 * 109.46805 * 59.97803 * 1 2 3 28 28 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.59707 * 62.55268 * 4 2 1 30 30 H 1.09002 * 109.45324 * 302.36032 * 4 2 1 31 31 H 1.09002 * 109.47398 * 185.17959 * 7 5 4 32 32 H 1.09001 * 109.47194 * 305.18139 * 7 5 4 33 33 H 1.00899 * 111.00283 * 303.95539 * 8 7 5 34 34 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 35 35 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 36 36 H 1.08998 * 109.47192 * 185.00503 * 10 9 8 37 37 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 38 38 H 1.08999 * 109.47093 * 300.00510 * 12 11 10 39 39 H 1.09001 * 109.47294 * 59.99816 * 12 11 10 40 40 H 0.96993 * 120.00081 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.52159 * 62.97591 * 21 5 4 42 42 H 1.08998 * 109.52181 * 183.09365 * 21 5 4 43 43 H 1.09007 * 109.46828 * 60.00681 * 24 22 21 44 44 H 1.09001 * 109.47264 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47254 * 300.00301 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7205 -1.2506 5 6 3.5711 -0.7710 -1.2120 6 1 3.9703 0.2428 -1.2414 7 6 4.0878 -1.5598 -2.4168 8 7 3.7584 -0.8373 -3.6528 9 6 4.2398 -1.5670 -4.8334 10 6 3.8796 -0.7851 -6.0981 11 8 4.5858 0.4571 -6.1075 12 6 4.3194 1.2685 -7.2533 13 6 5.1118 2.5469 -7.1589 14 1 5.7543 2.7223 -6.3087 15 6 5.0157 3.4928 -8.1573 16 7 5.7077 4.6082 -8.0751 17 14 3.9028 3.1903 -9.6267 18 1 2.5457 3.7190 -9.3370 19 1 4.4585 3.8797 -10.8187 20 1 3.8194 1.7317 -9.8924 21 6 4.0176 -1.4601 0.0813 22 6 3.4307 -0.7092 1.2792 23 1 3.8193 0.3090 1.2960 24 6 3.8225 -1.4263 2.5727 25 8 2.0064 -0.6741 1.1665 26 1 -0.3634 0.5135 0.8901 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7164 -0.1818 -2.1410 30 1 1.6431 -1.7352 -1.2727 31 1 5.1691 -1.6739 -2.3398 32 1 3.6190 -2.5437 -2.4352 33 1 2.7667 -0.6621 -3.7159 34 1 5.3221 -1.6815 -4.7734 35 1 3.7718 -2.5508 -4.8682 36 1 4.1570 -1.3675 -6.9767 37 1 2.8067 -0.5932 -6.1135 38 1 4.6062 0.7285 -8.1556 39 1 3.2556 1.5030 -7.2930 40 1 5.6398 5.2739 -8.7773 41 1 3.6613 -2.4902 0.0868 42 1 5.1058 -1.4508 0.1419 43 1 4.9089 -1.4538 2.6581 44 1 3.4042 -0.8918 3.4256 45 1 3.4334 -2.4443 2.5560 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724470343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:27 Heat of formation + Delta-G solvation = -137.625004 kcal Electronic energy + Delta-G solvation = -21148.649641 eV Core-core repulsion = 17971.355136 eV Total energy + Delta-G solvation = -3177.294505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75997 -38.89860 -37.35863 -34.99597 -34.64067 -34.33733 -31.29011 -30.36951 -28.95405 -27.37853 -25.79421 -23.94993 -23.03843 -22.58461 -22.09486 -21.05574 -19.05726 -17.61671 -17.47629 -17.01933 -16.85250 -16.58867 -16.27729 -15.70903 -15.56307 -14.90545 -14.85755 -14.64714 -14.62971 -13.87400 -13.76311 -13.47325 -13.39915 -13.14208 -13.09105 -12.83115 -12.80205 -12.69495 -12.62397 -12.40170 -12.06923 -11.86835 -11.81368 -11.80011 -11.42449 -11.32002 -11.15203 -10.91634 -10.34882 -10.29381 -9.25667 -8.36432 -6.44199 1.33068 1.36739 1.47613 2.30001 2.74536 2.95926 3.10080 3.19355 3.67480 3.78133 3.90580 3.95090 4.17823 4.22341 4.26469 4.27421 4.36720 4.45102 4.53067 4.55251 4.59818 4.61106 4.65257 4.70889 4.75885 4.77568 4.87463 4.94420 4.96026 5.02813 5.04839 5.08228 5.11700 5.19085 5.24303 5.34217 5.42495 5.45568 5.95132 6.13285 6.35232 6.49524 6.60473 6.82110 7.20610 8.81059 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.003134 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.695514 B = 8931.826775 C = 9145.109665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.049 0.951 4 C -0.139 4.139 5 C -0.088 4.088 6 H 0.061 0.939 7 C 0.073 3.927 8 N -0.701 5.701 9 C 0.071 3.929 10 C 0.050 3.950 11 O -0.395 6.395 12 C 0.179 3.821 13 C -0.544 4.544 14 H 0.027 0.973 15 C 0.010 3.990 16 N -0.944 5.944 17 Si 0.959 3.041 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.245 1.245 21 C -0.136 4.136 22 C 0.081 3.919 23 H 0.051 0.949 24 C -0.140 4.140 25 O -0.393 6.393 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.342 0.658 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.273 0.727 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -16.875 16.357 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.067 0.933 4 C -0.177 4.177 5 C -0.107 4.107 6 H 0.079 0.921 7 C -0.056 4.056 8 N -0.334 5.334 9 C -0.058 4.058 10 C -0.027 4.027 11 O -0.315 6.315 12 C 0.103 3.897 13 C -0.582 4.582 14 H 0.045 0.955 15 C -0.187 4.187 16 N -0.584 5.584 17 Si 0.780 3.220 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.168 1.168 21 C -0.174 4.174 22 C 0.023 3.977 23 H 0.069 0.931 24 C -0.197 4.197 25 O -0.314 6.314 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.161 0.839 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.385 -16.340 16.587 25.104 hybrid contribution -0.570 -0.102 -1.044 1.194 sum -9.955 -16.442 15.542 24.719 Atomic orbital electron populations 1.21759 0.92002 1.03067 1.03000 1.22131 0.95849 0.94637 0.84806 0.93313 1.22232 0.95268 1.01776 0.98442 1.21189 0.95547 0.99704 0.94241 0.92097 1.21922 1.00567 0.94671 0.88396 1.60305 1.21673 1.49738 1.01716 1.21905 1.01129 0.94375 0.88362 1.22703 0.95923 0.85972 0.98072 1.87975 1.68437 1.30586 1.44459 1.20291 0.94732 0.89455 0.85235 1.21177 1.27248 1.02245 1.07501 0.95499 1.25885 0.97323 0.93947 1.01572 1.70042 1.43062 1.09368 1.35885 0.85563 0.78849 0.80103 0.77518 1.18374 1.19840 1.16831 1.22185 1.01665 1.00162 0.93398 1.22196 0.80749 0.98683 0.96056 0.93099 1.21759 1.02265 1.00718 0.94963 1.87884 1.21722 1.78201 1.43573 0.91871 0.90047 0.91687 0.90746 0.90848 0.91518 0.94091 0.83853 0.91376 0.91205 0.92420 0.93271 0.97186 0.97340 0.91822 0.90651 0.89962 0.89579 0.91988 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.56 71.98 0.69 -1.64 16 2 C 0.08 1.67 3.26 30.63 0.10 1.77 16 3 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -2.71 4.41 30.69 0.14 -2.58 16 5 C -0.09 -1.85 2.48 -10.67 -0.03 -1.88 16 6 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 7 C 0.07 1.61 5.15 86.30 0.44 2.06 16 8 N -0.70 -19.39 6.45 -513.88 -3.31 -22.70 16 9 C 0.07 1.93 6.07 86.30 0.52 2.45 16 10 C 0.05 1.67 6.22 71.98 0.45 2.12 16 11 O -0.40 -18.79 10.27 -148.98 -1.53 -20.32 16 12 C 0.18 9.15 4.76 71.24 0.34 9.48 16 13 C -0.54 -33.98 9.99 25.60 0.26 -33.72 16 14 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 15 C 0.01 0.62 5.47 84.65 0.46 1.08 16 16 N -0.94 -60.41 13.96 21.45 0.30 -60.11 16 17 Si 0.96 43.83 27.47 68.60 1.88 45.71 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 21 C -0.14 -2.39 4.71 30.68 0.14 -2.25 16 22 C 0.08 1.50 3.26 30.62 0.10 1.60 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 C -0.14 -1.99 9.56 71.98 0.69 -1.30 16 25 O -0.39 -8.58 10.05 -148.98 -1.50 -10.08 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.49 6.84 -2.38 -0.02 1.47 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.34 8.69 7.07 -89.69 -0.63 8.06 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 39 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.55 355.46 0.38 -72.17 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.24 Total: 18.12 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.30 Total: -22.80 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.01 Total: -82.81 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -3.03 Total: -30.40 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -72.55 0.38 -72.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724470343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.453 kcal (2) G-P(sol) polarization free energy of solvation -72.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds