Wall clock time and date at job start Mon Mar 30 2020 04:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99798 * 2 1 4 4 C 1.52999 * 109.47259 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46797 * 65.00141 * 4 3 2 6 6 C 1.36938 * 120.00027 * 266.39805 * 5 4 3 7 7 H 1.07993 * 120.00243 * 145.99549 * 6 5 4 8 8 C 1.38814 * 119.99619 * 325.99463 * 6 5 4 9 9 N 1.31616 * 120.00844 * 337.17131 * 8 6 5 10 10 Si 1.86810 * 119.99689 * 157.16956 * 8 6 5 11 11 H 1.48493 * 109.47101 * 89.99982 * 10 8 6 12 12 H 1.48497 * 109.47058 * 210.00128 * 10 8 6 13 13 H 1.48501 * 109.46910 * 329.99911 * 10 8 6 14 14 C 1.46501 * 120.00347 * 86.40525 * 5 4 3 15 15 C 1.53005 * 109.47072 * 89.99319 * 14 5 4 16 16 H 1.08996 * 109.54269 * 54.82683 * 15 14 5 17 17 C 1.53183 * 109.54062 * 175.00280 * 15 14 5 18 18 C 1.53083 * 109.16476 * 176.93970 * 17 15 14 19 19 H 1.09000 * 109.48437 * 62.36965 * 18 17 15 20 20 C 1.52998 * 109.48454 * 182.40788 * 18 17 15 21 21 O 1.42908 * 109.41195 * 302.39160 * 18 17 15 22 22 C 1.42904 * 114.10088 * 61.16068 * 21 18 17 23 23 H 1.08996 * 109.48222 * 58.82745 * 22 21 18 24 24 C 1.52993 * 109.48233 * 178.86051 * 22 21 18 25 25 C 1.53094 * 109.42063 * 298.84555 * 22 21 18 26 26 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47365 * 299.99720 * 1 2 3 28 28 H 1.09000 * 109.47335 * 59.99921 * 1 2 3 29 29 H 1.09001 * 109.47295 * 59.99926 * 3 2 1 30 30 H 1.09007 * 109.47062 * 299.99962 * 3 2 1 31 31 H 1.08991 * 109.47381 * 305.00203 * 4 3 2 32 32 H 1.08999 * 109.47071 * 184.99682 * 4 3 2 33 33 H 0.96996 * 120.00905 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46690 * 329.99971 * 14 5 4 35 35 H 1.08998 * 109.47216 * 209.99768 * 14 5 4 36 36 H 1.09003 * 109.52204 * 57.02780 * 17 15 14 37 37 H 1.09001 * 109.57037 * 296.87437 * 17 15 14 38 38 H 1.08999 * 109.47519 * 179.97438 * 20 18 17 39 39 H 1.08994 * 109.46781 * 299.94300 * 20 18 17 40 40 H 1.09002 * 109.46799 * 59.94063 * 20 18 17 41 41 H 1.08998 * 109.47545 * 59.97012 * 24 22 21 42 42 H 1.08994 * 109.47029 * 179.97438 * 24 22 21 43 43 H 1.09002 * 109.46797 * 299.97404 * 24 22 21 44 44 H 1.08995 * 109.52412 * 177.50809 * 25 22 21 45 45 H 1.09003 * 109.52380 * 297.69928 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9755 0.5646 -1.2528 6 6 4.1677 -0.7898 -1.3155 7 1 3.9508 -1.3243 -2.2285 8 6 4.6413 -1.4757 -0.2055 9 7 5.3180 -0.8357 0.7245 10 14 4.3182 -3.3074 -0.0315 11 1 5.4257 -4.0677 -0.6643 12 1 4.2347 -3.6607 1.4084 13 1 3.0373 -3.6497 -0.7002 14 6 4.2103 1.3933 -2.4379 15 6 5.6678 1.8586 -2.4542 16 1 6.3275 0.9934 -2.3891 17 6 5.9480 2.6201 -3.7535 18 6 7.3850 3.1472 -3.7272 19 1 8.0792 2.3082 -3.6792 20 6 7.6537 3.9602 -4.9951 21 8 7.5644 3.9802 -2.5800 22 6 7.3620 3.3096 -1.3344 23 1 8.0559 2.4728 -1.2551 24 6 7.6073 4.2867 -0.1830 25 6 5.9241 2.7888 -1.2644 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5684 0.8408 32 1 3.9784 2.1767 0.0889 33 1 5.6486 -1.3148 1.5003 34 1 3.5520 2.2617 -2.4101 35 1 4.0050 0.8101 -3.3355 36 1 5.2547 3.4566 -3.8422 37 1 5.8213 1.9502 -4.6039 38 1 8.6767 4.3357 -4.9760 39 1 7.5167 3.3246 -5.8699 40 1 6.9590 4.7988 -5.0429 41 1 6.9133 5.1235 -0.2624 42 1 7.4524 3.7752 0.7669 43 1 8.6310 4.6578 -0.2332 44 1 5.7807 2.2388 -0.3344 45 1 5.2302 3.6286 -1.3028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724861656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:35 Heat of formation + Delta-G solvation = -86.984779 kcal Electronic energy + Delta-G solvation = -22776.163345 eV Core-core repulsion = 19601.064765 eV Total energy + Delta-G solvation = -3175.098580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.26593 -37.20163 -35.67492 -33.39260 -33.09834 -30.97911 -29.68669 -28.49132 -26.01168 -25.59152 -25.48591 -23.11759 -21.46124 -21.29500 -19.77342 -19.40540 -16.63471 -16.11357 -15.66789 -15.26900 -15.04125 -14.70269 -14.44087 -14.12100 -13.89325 -13.69528 -13.26829 -12.96667 -12.38407 -12.33837 -12.08886 -11.82798 -11.78865 -11.72630 -11.56098 -11.17203 -10.92888 -10.79124 -10.74781 -10.62644 -10.52400 -10.35331 -10.07910 -9.98151 -9.64876 -9.59197 -9.57641 -8.90637 -8.80762 -8.30982 -6.49315 -5.66775 -3.15934 3.46244 3.53592 3.60262 4.04428 4.61371 4.71456 5.07125 5.24210 5.32073 5.44273 5.46835 5.51877 5.60019 5.65437 5.76170 5.79887 5.80808 5.82799 5.94298 5.97512 6.05465 6.08231 6.11249 6.16071 6.25588 6.30809 6.36965 6.37965 6.40899 6.53556 6.56518 6.65368 6.70676 6.84267 6.90991 7.06447 7.25561 7.71867 7.72817 7.93111 8.10117 8.63562 9.30247 9.95807 10.49658 11.35680 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.005854 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.357112 B = 4781.963809 C = 5185.039772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.045 3.955 4 C 0.137 3.863 5 N -0.574 5.574 6 C -0.236 4.236 7 H 0.056 0.944 8 C 0.015 3.985 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.292 1.292 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.155 3.845 15 C -0.106 4.106 16 H 0.074 0.926 17 C -0.142 4.142 18 C 0.088 3.912 19 H 0.052 0.948 20 C -0.142 4.142 21 O -0.387 6.387 22 C 0.087 3.913 23 H 0.054 0.946 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.025 0.975 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.251 0.749 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 8.885 -4.610 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.034 4.034 4 C 0.011 3.989 5 N -0.293 5.293 6 C -0.366 4.366 7 H 0.074 0.926 8 C -0.184 4.184 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.220 1.220 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.029 3.971 15 C -0.127 4.127 16 H 0.092 0.908 17 C -0.181 4.181 18 C 0.031 3.969 19 H 0.070 0.930 20 C -0.199 4.199 21 O -0.307 6.307 22 C 0.030 3.970 23 H 0.072 0.928 24 C -0.197 4.197 25 C -0.171 4.171 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.077 8.837 -4.474 9.905 hybrid contribution -0.565 -1.001 0.190 1.165 sum -0.488 7.836 -4.284 8.944 Atomic orbital electron populations 1.22629 0.84339 1.01427 0.98367 1.88211 1.16497 1.27833 1.94810 1.23467 0.99272 0.84001 0.96685 1.21173 0.87144 0.97124 0.93505 1.43695 1.75511 1.03516 1.06619 1.18875 1.36435 0.82289 0.98958 0.92648 1.24891 0.97095 0.97377 0.99042 1.69938 1.36187 1.35497 1.12080 0.86432 0.78081 0.86172 0.76807 1.21950 1.21789 1.20505 1.20899 0.91628 0.93289 0.91321 1.21855 1.01561 0.97246 0.92062 0.90787 1.22259 0.96353 1.00091 0.99373 1.22002 0.96170 0.92788 0.85981 0.92998 1.21751 1.01958 1.00468 0.95716 1.87808 1.91091 1.38121 1.13698 1.22107 0.96978 0.94395 0.83530 0.92826 1.21727 1.01560 0.99386 0.97042 1.22225 0.94914 0.98625 1.01306 0.90770 0.95564 0.95349 0.95842 0.95650 0.87509 0.93849 0.93907 0.95149 0.94010 0.91985 0.91711 0.92450 0.91466 0.92163 0.92367 0.90986 0.92708 0.88874 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.95 10.35 -35.23 -0.36 -8.32 16 3 C 0.04 0.92 6.28 37.16 0.23 1.15 16 4 C 0.14 3.14 4.89 -4.04 -0.02 3.12 16 5 N -0.57 -13.76 2.26 -173.24 -0.39 -14.15 16 6 C -0.24 -6.38 9.17 -15.06 -0.14 -6.52 16 7 H 0.06 1.53 7.93 -52.49 -0.42 1.12 16 8 C 0.01 0.40 4.92 -17.43 -0.09 0.32 16 9 N -0.89 -25.12 11.36 55.49 0.63 -24.49 16 10 Si 0.89 22.28 29.61 -169.99 -5.03 17.25 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.16 3.19 5.18 -4.04 -0.02 3.17 16 15 C -0.11 -2.01 2.48 -90.43 -0.22 -2.23 16 16 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 17 C -0.14 -2.23 4.71 -26.59 -0.13 -2.36 16 18 C 0.09 1.33 3.26 -26.69 -0.09 1.24 16 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.14 -1.70 9.56 37.16 0.36 -1.35 16 21 O -0.39 -6.46 10.05 -35.23 -0.35 -6.81 16 22 C 0.09 1.46 3.26 -26.69 -0.09 1.38 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 C -0.14 -2.01 9.56 37.15 0.36 -1.65 16 25 C -0.13 -2.44 3.58 -26.59 -0.10 -2.53 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.11 2.83 5.35 -51.93 -0.28 2.55 16 32 H 0.04 0.92 5.88 -51.93 -0.31 0.61 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.04 0.86 8.04 -51.93 -0.42 0.45 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.97 6.12 -51.93 -0.32 1.65 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -29.06 350.92 -7.53 -36.58 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.48 Total: -0.71 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 1.17 Total: -4.64 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.24 Total: -38.64 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.72 Total: -15.13 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.06 -7.53 -36.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724861656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.400 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds