Wall clock time and date at job start Mon Mar 30 2020 04:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99798 * 2 1 4 4 C 1.52999 * 109.47259 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46797 * 65.00141 * 4 3 2 6 6 C 1.36938 * 120.00027 * 266.39805 * 5 4 3 7 7 H 1.07993 * 120.00243 * 145.99549 * 6 5 4 8 8 C 1.38814 * 119.99619 * 325.99463 * 6 5 4 9 9 N 1.31616 * 120.00844 * 337.17131 * 8 6 5 10 10 Si 1.86810 * 119.99689 * 157.16956 * 8 6 5 11 11 H 1.48493 * 109.47101 * 89.99982 * 10 8 6 12 12 H 1.48497 * 109.47058 * 210.00128 * 10 8 6 13 13 H 1.48501 * 109.46910 * 329.99911 * 10 8 6 14 14 C 1.46501 * 120.00347 * 86.40525 * 5 4 3 15 15 C 1.53005 * 109.47072 * 89.99319 * 14 5 4 16 16 H 1.08996 * 109.54269 * 54.82683 * 15 14 5 17 17 C 1.53183 * 109.54062 * 175.00280 * 15 14 5 18 18 C 1.53083 * 109.16476 * 176.93970 * 17 15 14 19 19 H 1.09000 * 109.48437 * 62.36965 * 18 17 15 20 20 C 1.52998 * 109.48454 * 182.40788 * 18 17 15 21 21 O 1.42908 * 109.41195 * 302.39160 * 18 17 15 22 22 C 1.42904 * 114.10088 * 61.16068 * 21 18 17 23 23 H 1.08996 * 109.48222 * 58.82745 * 22 21 18 24 24 C 1.52993 * 109.48233 * 178.86051 * 22 21 18 25 25 C 1.53094 * 109.42063 * 298.84555 * 22 21 18 26 26 H 1.09004 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47365 * 299.99720 * 1 2 3 28 28 H 1.09000 * 109.47335 * 59.99921 * 1 2 3 29 29 H 1.09001 * 109.47295 * 59.99926 * 3 2 1 30 30 H 1.09007 * 109.47062 * 299.99962 * 3 2 1 31 31 H 1.08991 * 109.47381 * 305.00203 * 4 3 2 32 32 H 1.08999 * 109.47071 * 184.99682 * 4 3 2 33 33 H 0.96996 * 120.00905 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46690 * 329.99971 * 14 5 4 35 35 H 1.08998 * 109.47216 * 209.99768 * 14 5 4 36 36 H 1.09003 * 109.52204 * 57.02780 * 17 15 14 37 37 H 1.09001 * 109.57037 * 296.87437 * 17 15 14 38 38 H 1.08999 * 109.47519 * 179.97438 * 20 18 17 39 39 H 1.08994 * 109.46781 * 299.94300 * 20 18 17 40 40 H 1.09002 * 109.46799 * 59.94063 * 20 18 17 41 41 H 1.08998 * 109.47545 * 59.97012 * 24 22 21 42 42 H 1.08994 * 109.47029 * 179.97438 * 24 22 21 43 43 H 1.09002 * 109.46797 * 299.97404 * 24 22 21 44 44 H 1.08995 * 109.52412 * 177.50809 * 25 22 21 45 45 H 1.09003 * 109.52380 * 297.69928 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9755 0.5646 -1.2528 6 6 4.1677 -0.7898 -1.3155 7 1 3.9508 -1.3243 -2.2285 8 6 4.6413 -1.4757 -0.2055 9 7 5.3180 -0.8357 0.7245 10 14 4.3182 -3.3074 -0.0315 11 1 5.4257 -4.0677 -0.6643 12 1 4.2347 -3.6607 1.4084 13 1 3.0373 -3.6497 -0.7002 14 6 4.2103 1.3933 -2.4379 15 6 5.6678 1.8586 -2.4542 16 1 6.3275 0.9934 -2.3891 17 6 5.9480 2.6201 -3.7535 18 6 7.3850 3.1472 -3.7272 19 1 8.0792 2.3082 -3.6792 20 6 7.6537 3.9602 -4.9951 21 8 7.5644 3.9802 -2.5800 22 6 7.3620 3.3096 -1.3344 23 1 8.0559 2.4728 -1.2551 24 6 7.6073 4.2867 -0.1830 25 6 5.9241 2.7888 -1.2644 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5684 0.8408 32 1 3.9784 2.1767 0.0889 33 1 5.6486 -1.3148 1.5003 34 1 3.5520 2.2617 -2.4101 35 1 4.0050 0.8101 -3.3355 36 1 5.2547 3.4566 -3.8422 37 1 5.8213 1.9502 -4.6039 38 1 8.6767 4.3357 -4.9760 39 1 7.5167 3.3246 -5.8699 40 1 6.9590 4.7988 -5.0429 41 1 6.9133 5.1235 -0.2624 42 1 7.4524 3.7752 0.7669 43 1 8.6310 4.6578 -0.2332 44 1 5.7807 2.2388 -0.3344 45 1 5.2302 3.6286 -1.3028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724861656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:34 Heat of formation + Delta-G solvation = -103.591225 kcal Electronic energy + Delta-G solvation = -22776.883454 eV Core-core repulsion = 19601.064765 eV Total energy + Delta-G solvation = -3175.818689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63430 -38.82895 -37.34925 -34.85802 -34.52200 -32.87615 -31.03961 -30.04890 -27.35620 -27.26026 -26.94471 -24.86557 -22.93125 -22.61377 -21.38385 -20.94779 -18.58903 -17.43345 -17.23708 -16.78643 -16.51975 -16.51671 -15.98186 -15.63369 -15.48704 -15.04857 -14.99660 -14.39689 -13.86042 -13.57110 -13.43971 -13.33195 -13.17529 -12.95950 -12.79594 -12.75894 -12.63571 -12.45483 -12.36064 -12.31454 -12.08674 -11.93789 -11.78976 -11.59858 -11.47596 -11.12553 -11.05036 -10.47631 -10.35353 -10.19260 -8.46254 -7.72441 -5.24032 1.45023 1.49246 1.58581 2.59219 2.81585 3.21379 3.39342 3.64809 3.87013 4.01851 4.08244 4.14008 4.30468 4.34392 4.41329 4.49734 4.53384 4.59495 4.61987 4.71633 4.73650 4.79885 4.80604 4.82325 4.87473 4.92145 4.93014 5.01878 5.07456 5.11879 5.17253 5.22271 5.26182 5.29910 5.42578 5.50922 5.65618 5.75426 5.87973 6.41619 6.49170 6.67687 7.28653 7.99760 8.48146 9.25093 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.005854 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.357112 B = 4781.963809 C = 5185.039772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.052 3.948 4 C 0.138 3.862 5 N -0.585 5.585 6 C -0.237 4.237 7 H 0.044 0.956 8 C -0.028 4.028 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.281 1.281 14 C 0.155 3.845 15 C -0.099 4.099 16 H 0.034 0.966 17 C -0.133 4.133 18 C 0.081 3.919 19 H 0.042 0.958 20 C -0.135 4.135 21 O -0.390 6.390 22 C 0.089 3.911 23 H 0.035 0.965 24 C -0.135 4.135 25 C -0.123 4.123 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.246 0.754 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 10.406 -5.680 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.012 3.988 5 N -0.305 5.305 6 C -0.368 4.368 7 H 0.061 0.939 8 C -0.224 4.224 9 N -0.558 5.558 10 Si 0.772 3.228 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.207 1.207 14 C 0.029 3.971 15 C -0.120 4.120 16 H 0.052 0.948 17 C -0.171 4.171 18 C 0.024 3.976 19 H 0.060 0.940 20 C -0.192 4.192 21 O -0.310 6.310 22 C 0.031 3.969 23 H 0.053 0.947 24 C -0.192 4.192 25 C -0.161 4.161 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.627 10.372 -5.561 11.785 hybrid contribution -0.398 -1.466 0.483 1.594 sum -1.025 8.906 -5.077 10.303 Atomic orbital electron populations 1.22822 0.81616 1.02602 1.00047 1.88132 1.19621 1.28888 1.95181 1.23301 0.97268 0.83888 0.98248 1.21074 0.89178 0.96756 0.91792 1.43808 1.75902 1.02988 1.07790 1.18955 1.35409 0.83994 0.98436 0.93858 1.25384 0.97675 1.00063 0.99282 1.70056 1.37272 1.36210 1.12292 0.85681 0.77698 0.83125 0.76265 1.21661 1.22164 1.20661 1.20980 0.92938 0.93352 0.89791 1.21670 0.99472 0.96412 0.94462 0.94757 1.22180 0.97179 1.00164 0.97604 1.22196 0.95391 0.93172 0.86856 0.93970 1.21731 1.02541 1.00487 0.94404 1.87819 1.90999 1.38343 1.13829 1.22054 0.95372 0.94657 0.84819 0.94721 1.21693 1.02682 0.98964 0.95827 1.22069 0.96351 0.98259 0.99384 0.89991 0.93473 0.93914 0.93560 0.94488 0.91107 0.92617 0.94497 0.93289 0.94423 0.90802 0.90550 0.91765 0.89566 0.91585 0.91403 0.91056 0.91359 0.92082 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.50 10.35 -148.98 -1.54 -19.04 16 3 C 0.05 2.05 6.28 71.98 0.45 2.50 16 4 C 0.14 6.36 4.89 86.38 0.42 6.78 16 5 N -0.59 -28.32 2.26 -702.00 -1.58 -29.90 16 6 C -0.24 -13.08 9.17 84.03 0.77 -12.31 16 7 H 0.04 2.45 7.93 -2.91 -0.02 2.43 16 8 C -0.03 -1.55 4.92 84.86 0.42 -1.13 16 9 N -0.91 -52.91 11.36 21.65 0.25 -52.66 16 10 Si 0.94 46.63 29.61 68.60 2.03 48.67 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 14 C 0.16 6.30 5.18 86.38 0.45 6.75 16 15 C -0.10 -3.75 2.48 -10.67 -0.03 -3.77 16 16 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 17 C -0.13 -3.95 4.71 30.68 0.14 -3.80 16 18 C 0.08 2.32 3.26 30.62 0.10 2.42 16 19 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 20 C -0.13 -2.84 9.56 71.98 0.69 -2.15 16 21 O -0.39 -12.39 10.05 -148.98 -1.50 -13.89 16 22 C 0.09 2.94 3.26 30.62 0.10 3.04 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 C -0.13 -3.70 9.56 71.98 0.69 -3.01 16 25 C -0.12 -4.49 3.58 30.69 0.11 -4.38 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 3.85 5.35 -2.39 -0.01 3.83 16 32 H 0.06 2.36 5.88 -2.39 -0.01 2.34 16 33 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.05 1.80 8.07 -2.38 -0.02 1.78 16 35 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 2.64 6.12 -2.39 -0.01 2.62 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -63.19 350.92 4.13 -59.06 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.92 Total: 14.78 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.56 Total: -7.01 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.34 Total: -82.56 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -3.04 Total: -32.93 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.67 kcal Total: -63.19 4.13 -59.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724861656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.532 kcal (2) G-P(sol) polarization free energy of solvation -63.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds