Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46576 * 182.27771 * 3 2 1 5 5 C 1.37127 * 119.99566 * 263.74338 * 4 3 2 6 6 H 1.07999 * 119.99743 * 202.30201 * 5 4 3 7 7 C 1.38190 * 120.00206 * 22.30412 * 5 4 3 8 8 N 1.31950 * 120.00169 * 19.34229 * 7 5 4 9 9 Si 1.86806 * 120.00262 * 199.33734 * 7 5 4 10 10 H 1.48496 * 109.46832 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47123 * 120.00263 * 9 7 5 12 12 H 1.48501 * 109.47258 * 240.00294 * 9 7 5 13 13 C 1.37601 * 120.00077 * 83.74907 * 4 3 2 14 14 O 1.35712 * 120.00589 * 37.23814 * 13 4 3 15 15 C 1.35364 * 119.99745 * 217.23741 * 13 4 3 16 16 C 1.51512 * 123.41843 * 185.81288 * 15 13 4 17 17 S 1.82549 * 102.50081 * 180.02562 * 16 15 13 18 18 C 1.77283 * 94.12682 * 359.97438 * 17 16 15 19 19 Cl 1.73604 * 125.97792 * 180.02562 * 18 17 16 20 20 N 1.29347 * 108.05073 * 0.02562 * 18 17 16 21 21 H 1.09001 * 109.47100 * 62.27855 * 3 2 1 22 22 H 1.09000 * 109.47300 * 302.27021 * 3 2 1 23 23 H 0.96999 * 119.99872 * 179.97438 * 8 7 5 24 24 H 0.96705 * 113.99863 * 4.91491 * 14 13 4 25 25 H 1.08995 * 110.80234 * 61.77080 * 16 15 13 26 26 H 1.09002 * 110.96852 * 298.35055 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3811 0.0549 5 6 3.4458 2.0309 -1.1007 6 1 4.1214 2.8727 -1.0634 7 6 2.9343 1.6088 -2.3131 8 7 1.8474 0.8613 -2.3462 9 14 3.7813 2.0964 -3.9050 10 1 4.9711 2.9300 -3.5974 11 1 4.2084 0.8745 -4.6330 12 1 2.8382 2.8719 -4.7502 13 6 3.2023 2.0255 1.2660 14 8 3.6038 1.3401 2.3664 15 6 2.9067 3.3431 1.3599 16 6 3.1176 4.1578 2.6198 17 16 2.5419 5.8162 2.1189 18 6 2.1267 5.3144 0.4700 19 17 1.4679 6.3342 -0.7709 20 7 2.4004 4.0557 0.3532 21 1 2.9716 -0.4772 -0.9097 22 1 2.9717 -0.5479 0.8689 23 1 1.4882 0.5653 -3.1973 24 1 3.8639 0.4260 2.1872 25 1 4.1722 4.1807 2.8940 26 1 2.5141 3.7702 3.4406 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725704028.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = 27.820184 kcal Electronic energy + Delta-G solvation = -16708.029424 eV Core-core repulsion = 13747.186997 eV Total energy + Delta-G solvation = -2960.842427 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 273.008 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92098 -38.48534 -37.74643 -37.35937 -36.43707 -33.72588 -31.49138 -29.72017 -27.79227 -25.69826 -23.79560 -20.75415 -20.02553 -19.59300 -18.28697 -18.18727 -16.62619 -16.28957 -16.09947 -15.93084 -15.45277 -15.05256 -14.53871 -14.41214 -14.01197 -13.83009 -13.69002 -13.48563 -13.25043 -12.93813 -12.61607 -12.26679 -12.06692 -12.01258 -11.87046 -11.74904 -11.40273 -10.32437 -9.92016 -9.51093 -8.51607 -7.76604 -5.85427 0.13402 0.39292 1.30856 1.43393 1.47216 1.56736 1.62870 1.79641 2.19786 2.28208 2.39267 2.76954 2.96403 3.04161 3.49795 4.12502 4.37825 4.50835 4.60511 4.73860 4.83005 5.29395 5.39784 5.68903 6.33056 6.62700 7.00945 7.13198 7.26360 7.43507 8.51011 Molecular weight = 273.01amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.009277 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.597147 B = 3017.440728 C = 3981.980170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.252 3.748 3 C 0.221 3.779 4 N -0.437 5.437 5 C -0.255 4.255 6 H 0.092 0.908 7 C 0.004 3.996 8 N -0.882 5.882 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.262 1.262 12 H -0.299 1.299 13 C 0.417 3.583 14 O -0.456 6.456 15 C -0.194 4.194 16 C -0.001 4.001 17 S -0.227 6.227 18 C 0.049 3.951 19 Cl -0.012 7.012 20 N -0.391 5.391 21 H 0.135 0.865 22 H 0.153 0.847 23 H 0.274 0.726 24 H 0.421 0.579 25 H 0.101 0.899 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -2.957 5.284 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.066 4.066 3 C 0.096 3.904 4 N -0.138 5.138 5 C -0.383 4.383 6 H 0.110 0.890 7 C -0.200 4.200 8 N -0.518 5.518 9 Si 0.806 3.194 10 H -0.189 1.189 11 H -0.186 1.186 12 H -0.226 1.226 13 C 0.249 3.751 14 O -0.257 6.257 15 C -0.319 4.319 16 C -0.152 4.152 17 S -0.004 6.004 18 C -0.258 4.258 19 Cl 0.015 6.985 20 N -0.103 5.103 21 H 0.152 0.848 22 H 0.170 0.830 23 H 0.084 0.916 24 H 0.279 0.721 25 H 0.119 0.881 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.627 -2.186 5.200 7.967 hybrid contribution 0.310 -0.438 -1.568 1.657 sum 5.937 -2.624 3.632 7.438 Atomic orbital electron populations 1.80932 1.15416 1.09282 1.13474 1.29810 0.96035 0.91565 0.89162 1.19141 0.79807 0.84037 1.07451 1.43280 1.55898 1.11108 1.03507 1.19649 1.21360 1.15589 0.81712 0.89019 1.25829 0.94921 0.97179 1.02032 1.70104 1.17873 1.35744 1.28070 0.85017 0.78108 0.78445 0.77844 1.18890 1.18633 1.22635 1.17558 0.91692 0.88050 0.77836 1.85045 1.80187 1.31405 1.29018 1.17768 1.28701 0.94217 0.91222 1.23113 1.04055 0.89238 0.98841 1.85890 1.81192 1.20107 1.13252 1.25886 1.17725 0.90409 0.91793 1.98289 1.84249 1.63818 1.52181 1.63775 1.06721 1.06101 1.33741 0.84788 0.82980 0.91645 0.72090 0.88121 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.45 18.54 20.01 0.37 -23.08 15 2 C 0.25 9.92 13.43 89.44 1.20 11.12 15 3 C 0.22 6.48 5.29 84.57 0.45 6.92 15 4 N -0.44 -15.88 2.62 -640.11 -1.68 -17.56 15 5 C -0.25 -10.96 7.69 83.85 0.64 -10.32 15 6 H 0.09 4.29 7.53 -2.91 -0.02 4.27 15 7 C 0.00 0.17 4.87 84.66 0.41 0.58 15 8 N -0.88 -40.63 9.53 21.55 0.21 -40.43 15 9 Si 0.98 37.35 29.59 68.60 2.03 39.38 15 10 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 11 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 12 H -0.30 -12.44 7.11 99.48 0.71 -11.73 15 13 C 0.42 14.47 7.01 83.12 0.58 15.05 15 14 O -0.46 -10.82 13.08 -90.33 -1.18 -12.00 15 15 C -0.19 -7.96 6.50 41.93 0.27 -7.69 15 16 C 0.00 -0.02 6.92 71.49 0.49 0.47 15 17 S -0.23 -8.87 23.41 -56.49 -1.32 -10.19 15 18 C 0.05 2.21 8.50 130.61 1.11 3.32 15 19 Cl -0.01 -0.51 29.33 -2.72 -0.08 -0.59 15 20 N -0.39 -18.45 8.15 -174.48 -1.42 -19.87 15 21 H 0.13 4.01 6.70 -2.39 -0.02 3.99 15 22 H 0.15 2.28 6.48 -2.39 -0.02 2.26 15 23 H 0.27 12.52 8.32 -92.71 -0.77 11.75 15 24 H 0.42 4.87 7.21 -74.05 -0.53 4.34 15 25 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 26 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 Total: -1.00 -64.37 268.33 2.81 -61.56 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 0.72 Total: 3.31 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 5.17 Total: 19.46 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -2.53 Total: -100.93 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.18 Total: -12.00 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.32 Total: -10.19 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -64.37 2.81 -61.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725704028.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.379 kcal (2) G-P(sol) polarization free energy of solvation -64.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds