Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47104 * 306.02712 * 3 2 1 5 5 C 1.37102 * 119.99717 * 95.87641 * 4 3 2 6 6 H 1.08001 * 119.99640 * 162.05876 * 5 4 3 7 7 C 1.38948 * 119.99906 * 342.34188 * 5 4 3 8 8 N 1.31413 * 120.00213 * 337.25908 * 7 5 4 9 9 Si 1.86796 * 120.00099 * 157.26516 * 7 5 4 10 10 H 1.48496 * 109.47747 * 89.99331 * 9 7 5 11 11 H 1.48499 * 109.47431 * 209.99809 * 9 7 5 12 12 H 1.48507 * 109.46940 * 329.99553 * 9 7 5 13 13 C 1.34774 * 120.00224 * 275.88208 * 4 3 2 14 14 O 1.21290 * 119.99895 * 180.02562 * 13 4 3 15 15 C 1.50695 * 119.99960 * 359.97438 * 13 4 3 16 16 H 1.08998 * 110.64002 * 53.13264 * 15 13 4 17 17 N 1.47136 * 110.71768 * 290.00232 * 15 13 4 18 18 N 1.37759 * 113.52235 * 241.63077 * 17 15 13 19 19 C 1.27974 * 121.16302 * 359.97438 * 18 17 15 20 20 Cl 1.73605 * 126.03933 * 180.02562 * 19 18 17 21 21 S 1.77188 * 107.91902 * 359.97438 * 19 18 17 22 22 H 4.40643 * 5.51366 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.46640 * 186.03402 * 3 2 1 24 24 H 1.08997 * 109.47095 * 66.03343 * 3 2 1 25 25 H 0.97005 * 120.00326 * 180.02562 * 8 7 5 26 26 H 0.97005 * 123.23506 * 61.59207 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8115 1.1171 5 6 3.4785 -2.1229 0.9122 6 1 4.0980 -2.6374 1.6319 7 6 3.0346 -2.7880 -0.2241 8 7 1.9663 -2.3619 -0.8598 9 14 3.9563 -4.2882 -0.8480 10 1 3.3975 -5.5106 -0.2168 11 1 3.8095 -4.3814 -2.3228 12 1 5.3949 -4.1651 -0.5006 13 6 3.2464 -0.2697 2.3460 14 8 3.6514 -0.9420 3.2707 15 6 2.8691 1.1718 2.5710 16 1 1.8605 1.3664 2.2063 17 7 3.8385 2.0706 1.9251 18 7 4.4979 2.8953 2.8098 19 6 4.2558 2.8479 4.0655 20 17 5.0081 3.8240 5.2883 21 16 3.0162 1.6110 4.3355 22 1 -1.0498 -0.0003 0.0001 23 1 3.0088 1.0228 0.1080 24 1 3.0096 -0.4166 -0.9390 25 1 1.6562 -2.8265 -1.6528 26 1 3.9983 2.0809 0.9683 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725704373.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = 104.537978 kcal Electronic energy + Delta-G solvation = -16495.142006 eV Core-core repulsion = 13537.626311 eV Total energy + Delta-G solvation = -2957.515694 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 273.008 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.34995 -37.81835 -36.84253 -35.41048 -32.55286 -31.62909 -31.16811 -27.36590 -26.66811 -24.54660 -22.05193 -20.17880 -18.55485 -18.04608 -17.08814 -16.67940 -16.26721 -15.49948 -15.04758 -14.43501 -14.05570 -14.01532 -13.35413 -12.94433 -12.48111 -12.33623 -11.80626 -11.69441 -11.50448 -11.26982 -11.07993 -10.69807 -10.46409 -9.84599 -9.62595 -9.50771 -9.33194 -9.12323 -8.54627 -8.09222 -7.31960 -6.53867 -4.05801 0.85507 1.68799 1.79137 1.94473 2.91140 3.12715 3.15949 3.21554 3.54861 3.80985 3.83640 4.00888 4.53864 4.83547 5.03006 5.15193 5.26491 5.46130 5.92119 6.44979 6.80033 7.16073 7.37928 7.76220 7.85243 8.18267 8.58979 8.88913 9.08986 9.60630 10.46004 Molecular weight = 273.01amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.005615 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.010940 B = 4985.488789 C = 5414.073639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.128 4.128 3 C 0.233 3.767 4 N -0.422 5.422 5 C -0.317 4.317 6 H 0.108 0.892 7 C 0.035 3.965 8 N -0.854 5.854 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.433 3.567 14 O -0.549 6.549 15 C 0.131 3.869 16 H 0.120 0.880 17 N -0.593 5.593 18 N -0.223 5.223 19 C 0.104 3.896 20 Cl 0.045 6.955 21 S -0.066 6.066 22 H 0.203 0.797 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.272 0.728 26 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 10.016 2.294 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.130 4.130 3 C 0.110 3.890 4 N -0.141 5.141 5 C -0.445 4.445 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.491 5.491 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.216 3.784 14 O -0.429 6.429 15 C -0.091 4.091 16 H 0.137 0.863 17 N -0.346 5.346 18 N -0.040 5.040 19 C -0.224 4.224 20 Cl 0.072 6.928 21 S 0.158 5.842 22 H 0.220 0.780 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.082 0.918 26 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 0.758 9.662 3.039 10.157 hybrid contribution 0.152 -0.737 -1.495 1.673 sum 0.910 8.925 1.544 9.103 Atomic orbital electron populations 1.24359 0.95425 1.04344 1.01917 1.23021 0.94237 0.96836 0.98904 1.18301 0.84658 0.92269 0.93795 1.43654 1.54837 1.10929 1.04645 1.19711 1.30010 0.86850 1.07879 0.87434 1.25344 0.95001 0.99296 0.97418 1.70090 1.18473 1.41127 1.19380 0.85976 0.80301 0.80976 0.77813 1.20155 1.20651 1.19196 1.19855 0.86926 0.87685 0.83914 1.90610 1.49776 1.61764 1.40797 1.25072 0.97892 0.94061 0.92035 0.86290 1.48675 1.41682 1.37109 1.07176 1.71386 1.16709 1.13433 1.02475 1.26820 1.03315 1.01399 0.90868 1.98400 1.80210 1.67333 1.46883 1.87007 1.46495 1.41414 1.09284 0.78039 0.92952 0.86689 0.91773 0.70585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.61 19.25 29.55 0.57 -4.04 15 2 C -0.13 -2.65 10.72 -37.12 -0.40 -3.05 15 3 C 0.23 4.72 4.89 -6.83 -0.03 4.68 15 4 N -0.42 -10.02 2.60 -117.93 -0.31 -10.33 15 5 C -0.32 -8.29 9.31 -14.93 -0.14 -8.42 15 6 H 0.11 2.99 7.40 -52.49 -0.39 2.60 15 7 C 0.04 0.87 4.83 -17.47 -0.08 0.78 15 8 N -0.85 -21.01 9.57 55.50 0.53 -20.48 15 9 Si 0.92 19.45 29.61 -169.99 -5.03 14.41 15 10 H -0.28 -5.92 7.11 56.52 0.40 -5.51 15 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 13 C 0.43 10.22 7.25 -10.99 -0.08 10.14 15 14 O -0.55 -14.88 15.64 5.55 0.09 -14.80 15 15 C 0.13 2.49 3.44 -4.85 -0.02 2.47 15 16 H 0.12 2.13 7.24 -51.93 -0.38 1.75 15 17 N -0.59 -9.99 6.83 -8.25 -0.06 -10.05 15 18 N -0.22 -3.79 11.71 32.72 0.38 -3.40 15 19 C 0.10 1.70 8.50 51.15 0.44 2.14 15 20 Cl 0.04 0.58 29.33 -51.86 -1.52 -0.94 15 21 S -0.07 -1.20 22.06 -107.50 -2.37 -3.57 15 22 H 0.20 3.09 7.80 -54.10 -0.42 2.67 15 23 H 0.05 0.86 4.82 -51.93 -0.25 0.61 15 24 H 0.12 2.44 6.49 -51.93 -0.34 2.10 15 25 H 0.27 6.40 8.31 -40.82 -0.34 6.06 15 26 H 0.44 6.49 6.82 -184.32 -1.26 5.23 15 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -29.37 265.74 -6.19 -35.56 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.16 Total: 4.89 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.25 Total: 4.70 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.55 Total: -44.26 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.37 Total: -3.57 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -1.52 Total: -0.94 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.37 -6.19 -35.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725704373.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.102 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds