Wall clock time and date at job start Mon Mar 30 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47145 * 2 1 4 4 C 1.42904 * 113.99814 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.90840 * 21.74322 * 4 3 2 6 6 C 1.53778 * 113.61310 * 250.49444 * 4 3 2 7 7 C 1.53781 * 87.17367 * 220.06257 * 6 4 3 8 8 H 1.08999 * 113.61758 * 140.02264 * 7 6 4 9 9 N 1.46903 * 113.61216 * 270.84226 * 7 6 4 10 10 C 1.46893 * 111.00044 * 183.43475 * 9 7 6 11 11 C 1.46895 * 110.99885 * 307.39098 * 9 7 6 12 12 C 1.53004 * 109.47215 * 170.00293 * 11 9 7 13 13 H 1.09003 * 109.47363 * 59.99255 * 12 11 9 14 14 O 1.42907 * 109.46762 * 300.00024 * 12 11 9 15 15 C 1.50696 * 109.47235 * 180.02562 * 12 11 9 16 16 H 1.07999 * 119.99973 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99865 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99780 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99779 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47104 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46615 * 119.99686 * 19 17 15 22 22 H 1.48497 * 109.46796 * 239.99609 * 19 17 15 23 23 C 1.53788 * 87.08038 * 25.38679 * 7 6 4 24 24 C 1.52999 * 113.60756 * 89.11766 * 23 7 6 25 25 C 1.52994 * 113.61372 * 220.02041 * 23 7 6 26 26 H 1.09004 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46985 * 300.00106 * 1 2 3 28 28 H 1.09003 * 109.47163 * 59.99960 * 1 2 3 29 29 H 1.09005 * 109.46985 * 239.99894 * 2 1 3 30 30 H 1.09003 * 109.47163 * 120.00040 * 2 1 3 31 31 H 1.09005 * 113.61660 * 105.46817 * 6 4 3 32 32 H 1.09002 * 113.61234 * 334.65156 * 6 4 3 33 33 H 1.09000 * 109.47163 * 66.29067 * 10 9 7 34 34 H 1.09002 * 109.47436 * 186.29477 * 10 9 7 35 35 H 1.09006 * 109.47428 * 306.29517 * 10 9 7 36 36 H 1.08999 * 109.47313 * 289.99839 * 11 9 7 37 37 H 1.08996 * 109.47498 * 50.00063 * 11 9 7 38 38 H 0.96696 * 113.99548 * 299.99663 * 14 12 11 39 39 H 0.97003 * 119.99703 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47192 * 60.00431 * 24 23 7 41 41 H 1.09006 * 109.46882 * 180.02562 * 24 23 7 42 42 H 1.08995 * 109.47182 * 299.99872 * 24 23 7 43 43 H 1.08994 * 109.47676 * 53.19570 * 25 23 7 44 44 H 1.09001 * 109.46653 * 173.19398 * 25 23 7 45 45 H 1.09001 * 109.47028 * 293.18866 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9273 0.5639 -0.3729 6 6 4.0084 1.9775 1.3274 7 6 4.9922 2.8093 0.4877 8 1 5.1653 3.8104 0.8825 9 7 6.2376 2.0996 0.1662 10 6 7.1666 2.9714 -0.5650 11 6 6.8655 1.5618 1.3804 12 6 8.0118 0.6265 0.9903 13 1 8.7522 1.1803 0.4131 14 8 7.5008 -0.4500 0.2014 15 6 8.6556 0.0743 2.2359 16 1 8.2845 0.3619 3.2085 17 6 9.7190 -0.7975 2.1339 18 7 10.1711 -1.1473 0.9495 19 14 10.5175 -1.4814 3.6780 20 1 9.8281 -0.9361 4.8749 21 1 10.4100 -2.9626 3.6762 22 1 11.9493 -1.0890 3.7102 23 6 3.9474 2.7619 -0.6398 24 6 2.9378 3.9103 -0.5884 25 6 4.5548 2.5645 -2.0301 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.4902 1.2037 1.9251 32 1 3.3066 2.5813 1.9029 33 1 7.4947 3.7809 0.0871 34 1 8.0313 2.3916 -0.8878 35 1 6.6631 3.3889 -1.4370 36 1 7.2553 2.3828 1.9821 37 1 6.1251 1.0080 1.9576 38 1 6.8354 -0.9870 0.6529 39 1 10.9190 -1.7609 0.8777 40 1 3.4643 4.8610 -0.6726 41 1 2.2323 3.8110 -1.4134 42 1 2.3973 3.8768 0.3575 43 1 5.2025 1.6880 -2.0226 44 1 3.7565 2.4201 -2.7581 45 1 5.1379 3.4449 -2.3002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:55 Heat of formation + Delta-G solvation = -72.027378 kcal Electronic energy + Delta-G solvation = -22569.420271 eV Core-core repulsion = 19394.970292 eV Total energy + Delta-G solvation = -3174.449978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28797 -37.24383 -35.91633 -33.83915 -32.06010 -31.10716 -30.36350 -28.46402 -27.10680 -25.61129 -24.67798 -23.03003 -22.47999 -21.96223 -19.79492 -18.03093 -16.95914 -16.66683 -15.60755 -15.16334 -15.10830 -14.81327 -14.54088 -14.09056 -13.78383 -13.48946 -13.21288 -12.94105 -12.65269 -12.55603 -12.39763 -12.21949 -12.05980 -11.96909 -11.66854 -11.20380 -11.15465 -11.11256 -10.94030 -10.91163 -10.76275 -10.52063 -10.42625 -10.10518 -10.03978 -9.83565 -9.10995 -8.91686 -8.55442 -8.07212 -7.58952 -6.00003 -4.18042 3.26304 3.34716 3.37845 3.82253 4.26778 4.44761 4.71640 4.75098 4.95425 5.09823 5.16052 5.27314 5.30380 5.41108 5.45739 5.55143 5.66955 5.72242 5.82061 5.84316 5.87590 5.91329 5.96726 6.01317 6.04614 6.10263 6.13265 6.21976 6.26624 6.28206 6.36361 6.51143 6.57487 6.70889 6.72172 6.87376 7.45720 7.58044 7.68227 7.80347 7.91051 8.22049 8.86313 9.46927 9.63307 11.04098 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.004787 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.912931 B = 5847.468560 C = 6494.067345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.084 3.916 5 H 0.096 0.904 6 C -0.158 4.158 7 C 0.065 3.935 8 H 0.048 0.952 9 N -0.510 5.510 10 C 0.023 3.977 11 C 0.027 3.973 12 C 0.238 3.762 13 H 0.054 0.946 14 O -0.553 6.553 15 C -0.574 4.574 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.340 0.660 39 H 0.259 0.741 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 6.340 -2.929 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.297 6.297 4 C 0.027 3.973 5 H 0.114 0.886 6 C -0.196 4.196 7 C -0.045 4.045 8 H 0.066 0.934 9 N -0.234 5.234 10 C -0.125 4.125 11 C -0.100 4.100 12 C 0.180 3.820 13 H 0.072 0.928 14 O -0.355 6.355 15 C -0.612 4.612 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.071 4.071 24 C -0.174 4.174 25 C -0.189 4.189 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.183 0.817 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.957 6.258 -3.785 16.649 hybrid contribution 0.608 -0.101 1.975 2.069 sum -14.349 6.157 -1.810 15.718 Atomic orbital electron populations 1.21733 0.94329 1.01883 1.02715 1.22443 0.94994 0.84582 1.00102 1.87884 1.21574 1.25654 1.94625 1.23758 0.79655 0.98049 0.95884 0.88619 1.23671 0.97938 1.00481 0.97481 1.22592 0.90424 0.95658 0.95777 0.93408 1.61898 1.03589 1.34228 1.23667 1.22522 0.97050 0.95186 0.97745 1.23178 0.98661 0.98453 0.89727 1.19312 0.88093 0.83967 0.90635 0.92826 1.86564 1.59826 1.45043 1.44042 1.21703 1.16929 1.29508 0.93074 0.92775 1.25013 0.96144 0.95787 0.95618 1.70093 1.24590 1.32489 1.22238 0.86649 0.79313 0.78920 0.83684 1.19767 1.20864 1.20918 1.22147 0.94670 0.94853 0.95411 1.21394 0.97755 0.96050 1.02217 1.21749 1.00109 1.02677 0.94343 0.91459 0.92144 0.92136 0.93496 0.93520 0.90241 0.89712 0.96669 0.90463 0.91729 0.95733 0.91444 0.81685 0.93088 0.93192 0.92387 0.92328 0.90402 0.93675 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.64 6.51 37.16 0.24 0.88 16 3 O -0.38 -5.14 9.44 -35.23 -0.33 -5.48 16 4 C 0.08 1.19 3.63 -25.83 -0.09 1.10 16 5 H 0.10 1.48 7.82 -51.93 -0.41 1.08 16 6 C -0.16 -2.29 6.99 -25.92 -0.18 -2.47 16 7 C 0.06 0.98 2.90 -66.89 -0.19 0.79 16 8 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 9 N -0.51 -8.99 3.60 -233.91 -0.84 -9.84 16 10 C 0.02 0.39 8.80 60.06 0.53 0.92 16 11 C 0.03 0.55 4.40 -3.82 -0.02 0.53 16 12 C 0.24 5.94 2.69 -27.88 -0.08 5.86 16 13 H 0.05 1.48 6.60 -51.93 -0.34 1.14 16 14 O -0.55 -14.15 12.60 -35.23 -0.44 -14.60 16 15 C -0.57 -15.65 8.76 -34.44 -0.30 -15.95 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 18 N -0.86 -25.30 12.84 55.43 0.71 -24.59 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.07 -0.95 1.35 -153.61 -0.21 -1.16 16 24 C -0.12 -1.40 8.46 37.16 0.31 -1.09 16 25 C -0.13 -1.78 7.62 37.15 0.28 -1.50 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.24 5.80 -51.93 -0.30 0.94 16 32 H 0.08 1.15 7.66 -51.93 -0.40 0.75 16 33 H 0.01 0.25 8.12 -51.93 -0.42 -0.18 16 34 H 0.08 1.47 6.58 -51.93 -0.34 1.13 16 35 H 0.06 0.95 5.24 -51.93 -0.27 0.68 16 36 H 0.02 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.07 1.34 5.64 -51.93 -0.29 1.05 16 38 H 0.34 7.87 9.04 45.56 0.41 8.28 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.71 7.18 -51.93 -0.37 0.34 16 43 H 0.08 1.21 7.29 -51.93 -0.38 0.83 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.67 6.51 -51.93 -0.34 0.34 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -29.55 348.00 -7.32 -36.87 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.22 Total: 7.24 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 0.58 Total: -10.94 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.13 Total: -34.43 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.78 Total: -20.07 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.55 -7.32 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.155 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds