Wall clock time and date at job start Mon Mar 30 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46719 * 2 1 4 4 C 1.42908 * 113.99932 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84521 * 341.19911 * 4 3 2 6 6 C 1.53777 * 113.61577 * 112.50447 * 4 3 2 7 7 C 1.53776 * 87.08248 * 139.98162 * 6 4 3 8 8 H 1.08993 * 113.69249 * 89.12612 * 7 6 4 9 9 N 1.46901 * 113.61687 * 220.02114 * 7 6 4 10 10 C 1.46896 * 111.00287 * 168.34744 * 9 7 6 11 11 C 1.46905 * 110.99815 * 292.30043 * 9 7 6 12 12 C 1.53004 * 109.47091 * 169.99662 * 11 9 7 13 13 H 1.09003 * 109.46535 * 60.00115 * 12 11 9 14 14 O 1.42900 * 109.46881 * 300.00312 * 12 11 9 15 15 C 1.50694 * 109.47029 * 179.97438 * 12 11 9 16 16 H 1.08008 * 120.00175 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99783 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00390 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99772 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47291 * 59.99978 * 19 17 15 21 21 H 1.48499 * 109.47219 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47212 * 300.00064 * 19 17 15 23 23 C 1.53777 * 113.61257 * 210.00553 * 4 3 2 24 24 C 1.53003 * 113.61753 * 334.56180 * 23 4 3 25 25 C 1.52996 * 113.61724 * 105.38609 * 23 4 3 26 26 H 1.09007 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47323 * 299.99747 * 1 2 3 28 28 H 1.08999 * 109.47166 * 60.00136 * 1 2 3 29 29 H 1.08990 * 109.47342 * 120.00075 * 2 1 3 30 30 H 1.09004 * 109.47199 * 240.00594 * 2 1 3 31 31 H 1.08999 * 113.61665 * 254.53219 * 6 4 3 32 32 H 1.09011 * 113.61369 * 25.43211 * 6 4 3 33 33 H 1.09002 * 109.47037 * 65.91825 * 10 9 7 34 34 H 1.08995 * 109.47333 * 185.91911 * 10 9 7 35 35 H 1.09006 * 109.47024 * 305.91692 * 10 9 7 36 36 H 1.08993 * 109.47113 * 290.00160 * 11 9 7 37 37 H 1.08997 * 109.46947 * 50.00048 * 11 9 7 38 38 H 0.96695 * 114.00184 * 299.98991 * 14 12 11 39 39 H 0.96998 * 120.00389 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46794 * 65.06391 * 24 23 4 41 41 H 1.09002 * 109.47282 * 185.06323 * 24 23 4 42 42 H 1.08997 * 109.46974 * 305.06614 * 24 23 4 43 43 H 1.09002 * 109.47233 * 40.49321 * 25 23 4 44 44 H 1.09004 * 109.47014 * 160.49239 * 25 23 4 45 45 H 1.08996 * 109.47158 * 280.48808 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9280 0.5457 0.3228 6 6 4.0018 2.0467 -1.3024 7 6 4.9895 2.8316 -0.4232 8 1 5.9144 2.2935 -0.2157 9 7 5.2210 4.2077 -0.8823 10 6 5.9428 4.9869 0.1323 11 6 5.9376 4.2212 -2.1647 12 6 5.9415 5.6423 -2.7318 13 1 6.4391 6.3120 -2.0303 14 8 4.5956 6.0783 -2.9335 15 6 6.6772 5.6563 -4.0468 16 1 7.0994 4.7429 -4.4392 17 6 6.8103 6.8350 -4.7497 18 7 6.2958 7.9471 -4.2722 19 14 7.7217 6.8522 -6.3803 20 1 7.0442 5.9394 -7.3357 21 1 7.7256 8.2314 -6.9306 22 1 9.1205 6.3996 -6.1704 23 6 3.9488 2.7252 0.7040 24 6 2.9403 3.8757 0.7176 25 6 4.5590 2.4537 2.0805 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 4.4806 1.3054 -1.9422 32 1 3.2977 2.6809 -1.8413 33 1 6.9466 4.5805 0.2563 34 1 6.0088 6.0269 -0.1872 35 1 5.4086 4.9315 1.0809 36 1 6.9641 3.8886 -2.0107 37 1 5.4400 3.5516 -2.8660 38 1 4.0917 5.5274 -3.5479 39 1 6.3898 8.7764 -4.7665 40 1 2.0737 3.5921 1.3149 41 1 3.4054 4.7616 1.1500 42 1 2.6232 4.0930 -0.3023 43 1 5.1512 1.5394 2.0416 44 1 5.1987 3.2890 2.3655 45 1 3.7620 2.3394 2.8151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:58 Heat of formation + Delta-G solvation = -77.555689 kcal Electronic energy + Delta-G solvation = -22378.624995 eV Core-core repulsion = 19203.935291 eV Total energy + Delta-G solvation = -3174.689704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25907 -37.31119 -35.94920 -33.81773 -32.01408 -31.17048 -30.39836 -28.31133 -27.15311 -25.77675 -24.66324 -22.98731 -22.38728 -21.88560 -19.82678 -18.16115 -17.06168 -16.61135 -15.72585 -15.24797 -15.06167 -14.66959 -14.50360 -13.90673 -13.83326 -13.71695 -13.19647 -12.94738 -12.78728 -12.61640 -12.38775 -12.32015 -11.81306 -11.75611 -11.63068 -11.25502 -11.21207 -11.07910 -11.06063 -10.88147 -10.80517 -10.60112 -10.43458 -10.19170 -10.03279 -9.81840 -9.21471 -8.90004 -8.51480 -8.01597 -7.55480 -5.95626 -4.13830 3.31078 3.36469 3.37971 3.67239 4.39086 4.57322 4.63360 4.69214 4.89004 4.90262 5.02044 5.13541 5.24756 5.31754 5.39152 5.40677 5.54726 5.59611 5.74632 5.77695 5.84519 5.86467 5.96862 5.98458 6.08449 6.14782 6.14864 6.25653 6.29471 6.38972 6.41774 6.53170 6.60536 6.73931 6.88557 6.90038 7.34683 7.63131 7.74296 7.84166 7.96312 8.26720 8.90135 9.52113 9.69207 11.08380 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.004243 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.411995 B = 6597.099724 C = 7038.322098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.069 3.931 5 H 0.080 0.920 6 C -0.140 4.140 7 C 0.061 3.939 8 H 0.054 0.946 9 N -0.509 5.509 10 C 0.027 3.973 11 C 0.031 3.969 12 C 0.238 3.762 13 H 0.053 0.947 14 O -0.553 6.553 15 C -0.575 4.575 16 H 0.052 0.948 17 C 0.081 3.919 18 N -0.858 5.858 19 Si 0.888 3.112 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.067 4.067 24 C -0.101 4.101 25 C -0.139 4.139 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.062 0.938 38 H 0.341 0.659 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -14.699 10.883 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.011 3.989 5 H 0.097 0.903 6 C -0.178 4.178 7 C -0.048 4.048 8 H 0.072 0.928 9 N -0.232 5.232 10 C -0.121 4.121 11 C -0.096 4.096 12 C 0.180 3.820 13 H 0.071 0.929 14 O -0.354 6.354 15 C -0.613 4.613 16 H 0.071 0.929 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.068 4.068 24 C -0.158 4.158 25 C -0.196 4.196 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.031 0.969 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.184 0.816 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.046 -13.637 11.224 19.016 hybrid contribution 1.614 -1.165 -1.257 2.354 sum -5.432 -14.803 9.967 18.654 Atomic orbital electron populations 1.21733 0.94025 1.01865 1.03179 1.22458 0.95459 0.84673 0.99556 1.87992 1.20610 1.25264 1.94548 1.23692 0.80879 0.97052 0.97286 0.90261 1.23467 0.98690 0.99062 0.96542 1.22918 0.95206 0.90814 0.95863 0.92798 1.62172 1.48626 1.09144 1.03281 1.22388 0.94928 0.99682 0.95133 1.23069 0.94503 1.02689 0.89364 1.19284 0.81501 0.87151 0.94030 0.92894 1.86558 1.25437 1.56789 1.66639 1.21639 1.38013 0.94701 1.06961 0.92929 1.25008 0.94509 0.95538 0.97501 1.70068 1.42401 0.98972 1.37968 0.86764 0.80368 0.77099 0.84264 1.20168 1.21206 1.20286 1.22176 0.95789 0.95374 0.93476 1.21184 0.96255 0.95307 1.03027 1.21811 1.00325 1.01148 0.96318 0.91509 0.91963 0.91760 0.93889 0.93688 0.92012 0.87970 0.96857 0.90565 0.92240 0.95960 0.91930 0.81576 0.92990 0.93499 0.92722 0.91173 0.93190 0.92216 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.55 6.50 37.16 0.24 0.79 16 3 O -0.37 -4.77 9.47 -35.23 -0.33 -5.10 16 4 C 0.07 0.87 3.75 -25.92 -0.10 0.77 16 5 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 6 C -0.14 -2.00 6.38 -25.92 -0.17 -2.16 16 7 C 0.06 0.92 2.62 -66.90 -0.18 0.75 16 8 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 9 N -0.51 -9.19 3.75 -233.91 -0.88 -10.07 16 10 C 0.03 0.47 8.96 60.06 0.54 1.00 16 11 C 0.03 0.65 4.49 -3.82 -0.02 0.63 16 12 C 0.24 6.08 2.69 -27.88 -0.08 6.00 16 13 H 0.05 1.49 6.60 -51.93 -0.34 1.14 16 14 O -0.55 -14.54 12.60 -35.23 -0.44 -14.99 16 15 C -0.57 -15.92 8.76 -34.44 -0.30 -16.22 16 16 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 17 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 18 N -0.86 -25.64 12.84 55.43 0.71 -24.93 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.07 -0.90 0.78 -153.69 -0.12 -1.02 16 24 C -0.10 -1.47 7.48 37.16 0.28 -1.19 16 25 C -0.14 -1.57 9.13 37.16 0.34 -1.23 16 26 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.66 7.61 -51.92 -0.40 1.26 16 33 H 0.01 0.22 8.13 -51.93 -0.42 -0.21 16 34 H 0.08 1.49 6.56 -51.93 -0.34 1.15 16 35 H 0.06 0.90 5.10 -51.93 -0.26 0.64 16 36 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 37 H 0.06 1.28 7.30 -51.93 -0.38 0.91 16 38 H 0.34 8.17 9.04 45.56 0.41 8.58 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.05 0.65 8.02 -51.93 -0.42 0.23 16 41 H 0.05 0.82 6.75 -51.93 -0.35 0.46 16 42 H 0.07 1.18 7.26 -51.93 -0.38 0.80 16 43 H 0.05 0.51 8.01 -51.93 -0.42 0.09 16 44 H 0.06 0.68 7.05 -51.93 -0.37 0.32 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -30.29 351.12 -7.34 -37.63 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.40 Total: 6.44 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 0.73 Total: -10.60 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.16 Total: -34.99 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.78 Total: -20.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.29 -7.34 -37.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.924 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds