Wall clock time and date at job start Mon Mar 30 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46719 * 2 1 4 4 C 1.42908 * 113.99932 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84521 * 341.19911 * 4 3 2 6 6 C 1.53777 * 113.61577 * 112.50447 * 4 3 2 7 7 C 1.53776 * 87.08248 * 139.98162 * 6 4 3 8 8 H 1.08993 * 113.69249 * 89.12612 * 7 6 4 9 9 N 1.46901 * 113.61687 * 220.02114 * 7 6 4 10 10 C 1.46896 * 111.00287 * 168.34744 * 9 7 6 11 11 C 1.46905 * 110.99815 * 292.30043 * 9 7 6 12 12 C 1.53004 * 109.47091 * 169.99662 * 11 9 7 13 13 H 1.09003 * 109.46535 * 60.00115 * 12 11 9 14 14 O 1.42900 * 109.46881 * 300.00312 * 12 11 9 15 15 C 1.50694 * 109.47029 * 179.97438 * 12 11 9 16 16 H 1.08008 * 120.00175 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99783 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00390 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99772 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47291 * 59.99978 * 19 17 15 21 21 H 1.48499 * 109.47219 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47212 * 300.00064 * 19 17 15 23 23 C 1.53777 * 113.61257 * 210.00553 * 4 3 2 24 24 C 1.53003 * 113.61753 * 334.56180 * 23 4 3 25 25 C 1.52996 * 113.61724 * 105.38609 * 23 4 3 26 26 H 1.09007 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47323 * 299.99747 * 1 2 3 28 28 H 1.08999 * 109.47166 * 60.00136 * 1 2 3 29 29 H 1.08990 * 109.47342 * 120.00075 * 2 1 3 30 30 H 1.09004 * 109.47199 * 240.00594 * 2 1 3 31 31 H 1.08999 * 113.61665 * 254.53219 * 6 4 3 32 32 H 1.09011 * 113.61369 * 25.43211 * 6 4 3 33 33 H 1.09002 * 109.47037 * 65.91825 * 10 9 7 34 34 H 1.08995 * 109.47333 * 185.91911 * 10 9 7 35 35 H 1.09006 * 109.47024 * 305.91692 * 10 9 7 36 36 H 1.08993 * 109.47113 * 290.00160 * 11 9 7 37 37 H 1.08997 * 109.46947 * 50.00048 * 11 9 7 38 38 H 0.96695 * 114.00184 * 299.98991 * 14 12 11 39 39 H 0.96998 * 120.00389 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46794 * 65.06391 * 24 23 4 41 41 H 1.09002 * 109.47282 * 185.06323 * 24 23 4 42 42 H 1.08997 * 109.46974 * 305.06614 * 24 23 4 43 43 H 1.09002 * 109.47233 * 40.49321 * 25 23 4 44 44 H 1.09004 * 109.47014 * 160.49239 * 25 23 4 45 45 H 1.08996 * 109.47158 * 280.48808 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9280 0.5457 0.3228 6 6 4.0018 2.0467 -1.3024 7 6 4.9895 2.8316 -0.4232 8 1 5.9144 2.2935 -0.2157 9 7 5.2210 4.2077 -0.8823 10 6 5.9428 4.9869 0.1323 11 6 5.9376 4.2212 -2.1647 12 6 5.9415 5.6423 -2.7318 13 1 6.4391 6.3120 -2.0303 14 8 4.5956 6.0783 -2.9335 15 6 6.6772 5.6563 -4.0468 16 1 7.0994 4.7429 -4.4392 17 6 6.8103 6.8350 -4.7497 18 7 6.2958 7.9471 -4.2722 19 14 7.7217 6.8522 -6.3803 20 1 7.0442 5.9394 -7.3357 21 1 7.7256 8.2314 -6.9306 22 1 9.1205 6.3996 -6.1704 23 6 3.9488 2.7252 0.7040 24 6 2.9403 3.8757 0.7176 25 6 4.5590 2.4537 2.0805 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 4.4806 1.3054 -1.9422 32 1 3.2977 2.6809 -1.8413 33 1 6.9466 4.5805 0.2563 34 1 6.0088 6.0269 -0.1872 35 1 5.4086 4.9315 1.0809 36 1 6.9641 3.8886 -2.0107 37 1 5.4400 3.5516 -2.8660 38 1 4.0917 5.5274 -3.5479 39 1 6.3898 8.7764 -4.7665 40 1 2.0737 3.5921 1.3149 41 1 3.4054 4.7616 1.1500 42 1 2.6232 4.0930 -0.3023 43 1 5.1512 1.5394 2.0416 44 1 5.1987 3.2890 2.3655 45 1 3.7620 2.3394 2.8151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:58 Heat of formation + Delta-G solvation = -98.614740 kcal Electronic energy + Delta-G solvation = -22379.538184 eV Core-core repulsion = 19203.935291 eV Total energy + Delta-G solvation = -3175.602893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38512 -38.60960 -37.49119 -35.41397 -34.18682 -32.02012 -31.40538 -30.21232 -28.22604 -27.38705 -26.28987 -23.92076 -23.38537 -23.34607 -21.54963 -19.39275 -18.89486 -17.77216 -16.72498 -16.64055 -16.52644 -16.28601 -16.14390 -15.44560 -15.29925 -15.14695 -14.34900 -14.32863 -14.15683 -13.87095 -13.38989 -13.26245 -13.13900 -12.95984 -12.88377 -12.87753 -12.76575 -12.66370 -12.45872 -12.23670 -12.13402 -12.02002 -11.94814 -11.62453 -11.28806 -11.04377 -10.88115 -10.66951 -10.17427 -10.02655 -9.04194 -8.11497 -6.37716 1.40351 1.42192 1.50333 2.38928 2.74432 3.14114 3.28991 3.52297 3.58114 3.84988 3.89899 4.24523 4.27616 4.32359 4.36148 4.40180 4.47291 4.50943 4.55938 4.59669 4.64511 4.72273 4.80359 4.88707 4.90705 5.00201 5.03189 5.07343 5.08496 5.09474 5.19956 5.22652 5.27557 5.33094 5.57447 5.61293 5.66195 5.79728 6.04194 6.25493 6.42590 6.46239 6.76157 7.36326 7.64495 8.92653 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.004243 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.411995 B = 6597.099724 C = 7038.322098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.387 6.387 4 C 0.082 3.918 5 H 0.105 0.895 6 C -0.143 4.143 7 C 0.056 3.944 8 H 0.066 0.934 9 N -0.519 5.519 10 C 0.033 3.967 11 C 0.052 3.948 12 C 0.239 3.761 13 H 0.020 0.980 14 O -0.568 6.568 15 C -0.590 4.590 16 H 0.057 0.943 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.269 1.269 23 C -0.065 4.065 24 C -0.093 4.093 25 C -0.135 4.135 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.020 0.980 37 H 0.065 0.935 38 H 0.350 0.650 39 H 0.261 0.739 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 -17.097 11.361 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.306 6.306 4 C 0.024 3.976 5 H 0.123 0.877 6 C -0.181 4.181 7 C -0.052 4.052 8 H 0.084 0.916 9 N -0.243 5.243 10 C -0.116 4.116 11 C -0.076 4.076 12 C 0.181 3.819 13 H 0.037 0.963 14 O -0.371 6.371 15 C -0.628 4.628 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.066 4.066 24 C -0.151 4.151 25 C -0.192 4.192 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.800 -16.062 11.710 21.008 hybrid contribution 1.465 -0.431 -1.368 2.050 sum -5.335 -16.493 10.341 20.185 Atomic orbital electron populations 1.21753 0.93284 1.03156 1.02451 1.22691 0.96152 0.83393 1.00617 1.87976 1.20680 1.27387 1.94531 1.23611 0.81134 0.97474 0.95429 0.87684 1.23440 0.98242 0.98988 0.97465 1.23059 0.96150 0.88890 0.97146 0.91632 1.62072 1.48116 1.11561 1.02509 1.22312 0.95786 0.97769 0.95685 1.22627 0.94777 0.99336 0.90907 1.19146 0.80664 0.89111 0.92984 0.96262 1.86505 1.25921 1.57655 1.67020 1.22047 1.38000 0.94955 1.07839 0.92456 1.25887 0.95294 0.95064 1.01339 1.70217 1.44079 0.99628 1.39693 0.85629 0.79242 0.77207 0.79572 1.19187 1.21000 1.19353 1.22137 0.94778 0.95309 0.94364 1.21068 0.97008 0.95805 1.01170 1.21779 1.00692 1.01878 0.94823 0.89221 0.92279 0.92898 0.92187 0.93146 0.91022 0.90546 0.96025 0.93797 0.90002 0.96173 0.91612 0.80654 0.93036 0.92696 0.93493 0.94060 0.91482 0.92447 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.83 6.50 71.98 0.47 1.30 16 3 O -0.39 -9.40 9.47 -148.98 -1.41 -10.81 16 4 C 0.08 1.87 3.75 31.12 0.12 1.98 16 5 H 0.11 1.89 7.73 -2.39 -0.02 1.87 16 6 C -0.14 -3.94 6.38 31.12 0.20 -3.74 16 7 C 0.06 1.61 2.62 45.44 0.12 1.73 16 8 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 9 N -0.52 -18.81 3.75 -893.95 -3.35 -22.16 16 10 C 0.03 1.14 8.96 127.69 1.14 2.28 16 11 C 0.05 2.17 4.49 86.30 0.39 2.56 16 12 C 0.24 12.55 2.69 29.85 0.08 12.64 16 13 H 0.02 1.15 6.60 -2.39 -0.02 1.13 16 14 O -0.57 -30.95 12.60 -148.98 -1.88 -32.83 16 15 C -0.59 -33.08 8.76 25.60 0.22 -32.86 16 16 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 17 C 0.03 1.51 5.40 84.66 0.46 1.97 16 18 N -0.90 -54.90 12.84 21.45 0.28 -54.63 16 19 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C -0.07 -1.61 0.78 -51.65 -0.04 -1.65 16 24 C -0.09 -2.69 7.48 71.98 0.54 -2.15 16 25 C -0.13 -2.63 9.13 71.98 0.66 -1.97 16 26 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.51 7.61 -2.38 -0.02 2.49 16 33 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.04 1.80 6.56 -2.39 -0.02 1.78 16 35 H 0.08 2.44 5.10 -2.38 -0.01 2.43 16 36 H 0.02 0.85 8.11 -2.39 -0.02 0.83 16 37 H 0.07 2.70 7.30 -2.39 -0.02 2.68 16 38 H 0.35 17.29 9.04 -74.06 -0.67 16.63 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.05 1.47 8.02 -2.39 -0.02 1.45 16 41 H 0.05 1.39 6.75 -2.39 -0.02 1.37 16 42 H 0.04 1.41 7.26 -2.39 -0.02 1.40 16 43 H 0.07 1.10 8.01 -2.39 -0.02 1.08 16 44 H 0.06 1.15 7.05 -2.39 -0.02 1.14 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -65.89 351.12 1.03 -64.86 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.28 Total: 29.07 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 5.09 Total: -19.45 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.07 Total: -76.79 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -3.29 Total: -43.64 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.89 1.03 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.755 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds