Wall clock time and date at job start Mon Mar 30 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47057 * 2 1 4 4 C 1.42900 * 113.99995 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84867 * 339.66256 * 4 3 2 6 6 C 1.53772 * 113.61623 * 110.86651 * 4 3 2 7 7 C 1.53777 * 87.08609 * 139.98272 * 6 4 3 8 8 H 1.09001 * 113.61512 * 219.93524 * 7 6 4 9 9 N 1.46899 * 113.61954 * 89.11065 * 7 6 4 10 10 C 1.46898 * 111.00139 * 178.39398 * 9 7 6 11 11 C 1.46901 * 110.99698 * 54.44264 * 9 7 6 12 12 C 1.52997 * 109.47200 * 195.96092 * 11 9 7 13 13 H 1.09005 * 109.46779 * 53.79449 * 12 11 9 14 14 O 1.42892 * 109.47395 * 293.79151 * 12 11 9 15 15 C 1.50705 * 109.47105 * 173.78992 * 12 11 9 16 16 H 1.08004 * 119.99703 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99725 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99621 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 120.00259 * 359.97438 * 17 15 12 20 20 H 1.48489 * 109.46854 * 90.00506 * 19 17 15 21 21 H 1.48496 * 109.46875 * 210.00679 * 19 17 15 22 22 H 1.48499 * 109.46916 * 330.00208 * 19 17 15 23 23 C 1.53785 * 113.61395 * 208.47242 * 4 3 2 24 24 C 1.52996 * 113.61324 * 334.56731 * 23 4 3 25 25 C 1.52998 * 113.61480 * 105.46699 * 23 4 3 26 26 H 1.08997 * 109.47169 * 300.00145 * 1 2 3 27 27 H 1.08998 * 109.47262 * 59.99488 * 1 2 3 28 28 H 1.08993 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46964 * 240.00242 * 2 1 3 30 30 H 1.08994 * 109.46832 * 119.99914 * 2 1 3 31 31 H 1.09002 * 113.61461 * 254.53279 * 6 4 3 32 32 H 1.08999 * 113.61536 * 25.42565 * 6 4 3 33 33 H 1.09001 * 109.46733 * 50.51914 * 10 9 7 34 34 H 1.08998 * 109.46984 * 170.51275 * 10 9 7 35 35 H 1.08993 * 109.47601 * 290.51649 * 10 9 7 36 36 H 1.09005 * 109.47189 * 315.96734 * 11 9 7 37 37 H 1.09005 * 109.46876 * 75.95759 * 11 9 7 38 38 H 0.96700 * 113.99890 * 299.99888 * 14 12 11 39 39 H 0.97001 * 119.99857 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47458 * 79.50564 * 24 23 4 41 41 H 1.08997 * 109.47161 * 199.50400 * 24 23 4 42 42 H 1.08999 * 109.47555 * 319.50371 * 24 23 4 43 43 H 1.09004 * 109.46818 * 55.97470 * 25 23 4 44 44 H 1.09000 * 109.47075 * 175.97251 * 25 23 4 45 45 H 1.08996 * 109.47420 * 295.97529 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9273 0.5546 0.3482 6 6 4.0048 2.0093 -1.3173 7 6 4.9906 2.8189 -0.4586 8 1 5.1643 3.8293 -0.8288 9 7 6.2357 2.1002 -0.1563 10 6 7.1490 2.9380 0.6322 11 6 6.8839 1.6295 -1.3877 12 6 7.9309 0.5695 -1.0397 13 1 7.4673 -0.2174 -0.4445 14 8 8.9885 1.1722 -0.2914 15 6 8.4875 -0.0226 -2.3089 16 1 8.1298 0.3225 -3.2678 17 6 9.4524 -1.0053 -2.2458 18 7 9.9385 -1.5216 -3.3535 19 14 10.0704 -1.6026 -0.5872 20 1 9.2347 -2.7410 -0.1283 21 1 11.4822 -2.0447 -0.7150 22 1 9.9856 -0.4965 0.4001 23 6 3.9474 2.7435 0.6711 24 6 2.9389 3.8938 0.6520 25 6 4.5565 2.5085 2.0549 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.4850 1.2500 -1.9346 32 1 3.3020 2.6277 -1.8756 33 1 6.6148 3.3528 1.4870 34 1 7.9842 2.3328 0.9847 35 1 7.5256 3.7500 0.0103 36 1 6.1345 1.1963 -2.0501 37 1 7.3684 2.4687 -1.8869 38 1 9.4469 1.8827 -0.7606 39 1 10.6176 -2.2128 -3.3091 40 1 2.2031 3.7452 1.4423 41 1 3.4606 4.8371 0.8140 42 1 2.4345 3.9189 -0.3139 43 1 5.3544 1.7695 1.9799 44 1 4.9633 3.4449 2.4366 45 1 3.7860 2.1435 2.7338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:01 Heat of formation + Delta-G solvation = -87.033960 kcal Electronic energy + Delta-G solvation = -22607.220216 eV Core-core repulsion = 19432.119504 eV Total energy + Delta-G solvation = -3175.100712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51101 -38.80685 -37.64811 -35.30310 -34.39759 -32.11178 -31.43161 -30.72423 -28.23987 -27.19526 -26.10291 -24.12100 -23.49037 -23.25243 -21.72155 -19.51610 -18.89114 -17.90918 -16.86992 -16.77205 -16.45669 -16.44332 -16.12856 -15.89731 -15.41379 -14.83241 -14.71081 -14.32015 -14.12528 -13.71051 -13.59264 -13.48508 -13.22164 -13.13663 -12.98123 -12.94254 -12.73538 -12.54261 -12.46352 -12.13977 -12.09033 -11.91152 -11.89030 -11.56217 -11.26477 -11.08946 -11.02427 -10.78327 -10.18854 -9.98324 -9.08659 -8.34504 -6.49016 1.41788 1.46777 1.76719 2.45141 2.78943 2.97264 3.04026 3.55155 3.58346 3.79670 4.04931 4.06793 4.20786 4.30985 4.37558 4.39742 4.42798 4.47983 4.53224 4.63963 4.73063 4.74843 4.81833 4.83826 4.90071 4.92987 5.01108 5.03529 5.06198 5.15360 5.20131 5.27447 5.29385 5.34645 5.47302 5.53129 5.61152 5.62321 6.07002 6.22912 6.33463 6.42532 6.63881 7.19391 7.35134 8.79820 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.005155 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.138132 B = 5430.148714 C = 6067.745420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.383 6.383 4 C 0.084 3.916 5 H 0.079 0.921 6 C -0.158 4.158 7 C 0.062 3.938 8 H 0.055 0.945 9 N -0.523 5.523 10 C 0.017 3.983 11 C 0.052 3.948 12 C 0.215 3.785 13 H 0.051 0.949 14 O -0.574 6.574 15 C -0.565 4.565 16 H 0.034 0.966 17 C 0.029 3.971 18 N -0.942 5.942 19 Si 0.940 3.060 20 H -0.288 1.288 21 H -0.300 1.300 22 H -0.201 1.201 23 C -0.062 4.062 24 C -0.111 4.111 25 C -0.132 4.132 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.017 0.983 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.364 0.636 39 H 0.266 0.734 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.583 9.158 10.843 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.303 6.303 4 C 0.026 3.974 5 H 0.097 0.903 6 C -0.196 4.196 7 C -0.047 4.047 8 H 0.073 0.927 9 N -0.246 5.246 10 C -0.130 4.130 11 C -0.076 4.076 12 C 0.157 3.843 13 H 0.069 0.931 14 O -0.381 6.381 15 C -0.603 4.603 16 H 0.052 0.948 17 C -0.170 4.170 18 N -0.581 5.581 19 Si 0.765 3.235 20 H -0.215 1.215 21 H -0.227 1.227 22 H -0.122 1.122 23 C -0.063 4.063 24 C -0.168 4.168 25 C -0.189 4.189 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.212 0.788 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.919 8.380 11.503 21.353 hybrid contribution 1.151 0.056 -1.239 1.692 sum -14.768 8.436 10.264 19.865 Atomic orbital electron populations 1.21720 0.92397 1.03162 1.02815 1.22644 0.96612 0.83680 1.00012 1.87876 1.20889 1.26884 1.94612 1.23603 0.80206 0.97870 0.95722 0.90334 1.23669 0.98128 1.00237 0.97545 1.22660 0.89495 0.95512 0.97018 0.92742 1.61859 1.04689 1.38897 1.19204 1.22782 0.97167 0.95614 0.97466 1.22566 0.96938 0.97295 0.90828 1.19446 0.84509 0.91039 0.89354 0.93094 1.86592 1.50732 1.54326 1.46418 1.21842 1.23192 1.21715 0.93551 0.94800 1.25847 0.95556 0.95224 1.00376 1.70093 1.29634 1.28272 1.30103 0.85972 0.75998 0.79419 0.82154 1.21518 1.22688 1.12218 1.22141 0.94208 0.95078 0.94850 1.21350 0.97452 0.95734 1.02304 1.21738 1.00651 1.02065 0.94413 0.91819 0.92208 0.89652 0.94004 0.93247 0.91997 0.88536 0.90295 0.89608 0.96461 0.91351 0.95792 0.78835 0.92517 0.91746 0.91855 0.92686 0.91918 0.91773 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 1.02 6.50 71.98 0.47 1.49 16 3 O -0.38 -9.75 9.50 -148.98 -1.42 -11.17 16 4 C 0.08 2.24 3.64 31.12 0.11 2.35 16 5 H 0.08 2.32 7.84 -2.39 -0.02 2.30 16 6 C -0.16 -4.41 6.98 31.12 0.22 -4.19 16 7 C 0.06 1.70 2.88 45.50 0.13 1.83 16 8 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 9 N -0.52 -16.55 3.63 -893.61 -3.24 -19.79 16 10 C 0.02 0.49 8.25 127.69 1.05 1.54 16 11 C 0.05 1.97 4.61 86.30 0.40 2.37 16 12 C 0.21 9.66 2.51 29.85 0.07 9.74 16 13 H 0.05 2.43 7.57 -2.38 -0.02 2.41 16 14 O -0.57 -23.74 7.16 -148.98 -1.07 -24.81 16 15 C -0.56 -31.43 9.34 25.60 0.24 -31.19 16 16 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 17 C 0.03 1.70 5.47 84.65 0.46 2.16 16 18 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 19 Si 0.94 45.02 26.99 68.60 1.85 46.88 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.20 -9.01 5.31 99.48 0.53 -8.48 16 23 C -0.06 -1.48 1.35 -51.60 -0.07 -1.55 16 24 C -0.11 -2.26 8.42 71.98 0.61 -1.65 16 25 C -0.13 -2.99 7.57 71.98 0.54 -2.44 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.97 5.89 -2.39 -0.01 1.95 16 32 H 0.10 2.48 7.64 -2.39 -0.02 2.46 16 33 H 0.08 1.92 5.36 -2.39 -0.01 1.91 16 34 H 0.09 2.73 5.67 -2.39 -0.01 2.72 16 35 H 0.02 0.47 8.00 -2.39 -0.02 0.45 16 36 H 0.07 2.73 5.56 -2.38 -0.01 2.71 16 37 H 0.02 0.92 7.95 -2.38 -0.02 0.90 16 38 H 0.36 13.53 9.04 -74.06 -0.67 12.86 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.16 7.26 -2.39 -0.02 1.15 16 43 H 0.06 1.66 6.41 -2.38 -0.02 1.65 16 44 H 0.06 1.28 7.21 -2.39 -0.02 1.26 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -63.53 339.47 1.51 -62.01 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.11 Total: 26.31 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.98 Total: -21.20 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.94 Total: -78.03 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -2.48 Total: -35.98 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.85 Total: 46.88 kcal Total: -63.53 1.51 -62.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.019 kcal (2) G-P(sol) polarization free energy of solvation -63.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds