Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 C 1.34770 * 134.45830 * 204.64432 * 11 10 9 13 13 O 1.21632 * 119.99982 * 179.86622 * 12 11 10 14 14 C 1.47226 * 120.00300 * 359.86690 * 12 11 10 15 15 N 1.30607 * 125.53013 * 359.69426 * 14 12 11 16 16 C 1.30734 * 115.89482 * 179.77809 * 15 14 12 17 17 Cl 1.73597 * 122.11862 * 180.21969 * 16 15 14 18 18 C 1.34340 * 115.75732 * 0.51766 * 16 15 14 19 19 S 1.71061 * 109.09542 * 359.72375 * 18 16 15 20 20 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 23 23 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 24 24 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 25 25 H 1.08003 * 125.45295 * 179.74198 * 18 16 15 26 26 H 1.09008 * 113.76654 * 221.15420 * 20 11 10 27 27 H 1.08991 * 113.77014 * 89.75468 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7552 -2.9298 1.3906 11 7 1.1912 -4.2905 1.0121 12 6 0.8417 -5.5344 1.3952 13 8 1.3856 -6.5003 0.8946 14 6 -0.1986 -5.7242 2.4195 15 7 -0.8463 -4.7682 3.0298 16 6 -1.7373 -5.1515 3.9064 17 17 -2.6943 -4.0166 4.8063 18 6 -1.8609 -6.4790 4.0711 19 16 -0.7664 -7.2768 3.0262 20 6 2.1609 -3.7401 0.0451 21 1 -0.4849 0.8400 0.0004 22 1 0.4839 -2.5462 -0.7747 23 1 1.3259 -2.4984 2.2130 24 1 -0.3225 -2.8333 1.5223 25 1 -2.5425 -6.9648 4.7536 26 1 2.2033 -4.2895 -0.8954 27 1 3.1452 -3.5473 0.4715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473175.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = 42.820791 kcal Electronic energy + Delta-G solvation = -15949.636683 eV Core-core repulsion = 13054.870642 eV Total energy + Delta-G solvation = -2894.766041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.013 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14096 -39.03878 -37.05982 -36.54955 -32.68580 -30.93046 -29.03604 -26.51704 -25.11819 -24.81817 -21.81836 -20.07541 -18.92007 -17.98758 -16.91124 -16.46438 -15.80010 -15.41945 -15.17476 -14.62031 -14.27726 -13.74580 -13.27145 -12.58018 -12.24928 -12.11396 -11.70954 -11.57031 -11.27574 -11.12352 -10.95770 -10.85541 -10.44184 -10.29584 -9.89469 -9.78218 -9.33158 -9.03579 -8.87233 -8.57536 -7.96498 -6.15716 -4.21854 0.10198 0.91053 1.17424 2.16367 2.18479 3.25610 3.33058 3.34965 3.37234 3.44667 4.27117 4.35924 4.82748 4.89807 5.14739 5.39723 6.04052 6.10498 6.22735 6.32147 6.63099 6.67685 6.93331 7.22540 7.54852 7.81122 8.15310 8.23730 8.48726 8.80823 9.44801 10.93845 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.005584 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.117649 B = 5012.836597 C = 6198.596229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.117 3.883 11 N -0.608 5.608 12 C 0.598 3.402 13 O -0.553 6.553 14 C 0.024 3.976 15 N -0.411 5.411 16 C 0.112 3.888 17 Cl -0.009 7.009 18 C -0.283 4.283 19 S 0.266 5.734 20 C 0.107 3.893 21 H 0.264 0.736 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.191 0.809 26 H 0.067 0.933 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -11.156 8.294 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.011 3.989 10 C -0.005 4.005 11 N -0.339 5.339 12 C 0.383 3.617 13 O -0.434 6.434 14 C -0.253 4.253 15 N -0.129 5.129 16 C -0.053 4.053 17 Cl 0.020 6.980 18 C -0.425 4.425 19 S 0.521 5.479 20 C -0.015 4.015 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.209 0.791 26 H 0.085 0.915 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.015 -12.111 7.813 14.962 hybrid contribution -0.466 1.742 0.915 2.021 sum -4.481 -10.370 8.728 14.275 Atomic orbital electron populations 1.69953 1.06028 1.27142 1.48822 1.25015 0.94851 0.99346 0.94278 0.86545 0.79875 0.83083 0.78232 1.20518 1.21161 1.19725 1.20922 0.93008 0.89537 1.52449 0.91790 1.20566 0.94069 0.91286 0.92948 1.23878 1.00707 0.74564 1.01334 1.50452 1.38843 1.04635 1.40018 1.16382 0.81304 0.83461 0.80601 1.90807 1.56110 1.39529 1.56925 1.27859 1.02906 0.91331 1.03192 1.66431 1.05732 1.34343 1.06407 1.20488 0.97859 0.88577 0.98342 1.98404 1.67639 1.61057 1.70948 1.26540 1.09267 0.97060 1.09629 1.84004 1.26621 1.09295 1.27959 1.23686 0.93852 0.93609 0.90317 0.92607 0.91691 0.90484 0.90460 0.79144 0.91473 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.20 13.29 55.43 0.74 -23.46 15 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.52 -13.22 8.77 -34.44 -0.30 -13.52 15 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 15 9 C 0.03 0.72 3.60 -90.84 -0.33 0.39 15 10 C 0.12 2.58 7.42 -2.84 -0.02 2.56 15 11 N -0.61 -12.66 3.61 -179.56 -0.65 -13.30 15 12 C 0.60 11.95 8.04 -12.61 -0.10 11.85 15 13 O -0.55 -11.79 17.67 5.25 0.09 -11.69 15 14 C 0.02 0.41 7.42 -14.42 -0.11 0.30 15 15 N -0.41 -7.23 8.92 -8.61 -0.08 -7.30 15 16 C 0.11 1.64 7.22 -19.39 -0.14 1.50 15 17 Cl -0.01 -0.12 29.20 -51.86 -1.51 -1.63 15 18 C -0.28 -3.21 10.93 29.36 0.32 -2.89 15 19 S 0.27 3.27 23.03 -107.50 -2.48 0.80 15 20 C 0.11 2.18 8.39 -2.96 -0.02 2.15 15 21 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 22 H 0.07 1.65 8.14 -51.93 -0.42 1.23 15 23 H 0.08 1.72 8.09 -51.93 -0.42 1.30 15 24 H 0.08 1.79 7.48 -51.93 -0.39 1.40 15 25 H 0.19 1.47 8.06 -52.48 -0.42 1.05 15 26 H 0.07 1.29 8.14 -51.92 -0.42 0.87 15 27 H 0.08 1.56 8.09 -51.93 -0.42 1.14 15 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -28.48 277.96 -7.56 -36.04 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -2.04 Total: -2.81 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.80 Total: 4.04 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.01 Total: -44.07 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.48 Total: 0.80 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.51 Total: -1.63 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.48 -7.56 -36.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473175.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.862 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds