Wall clock time and date at job start Mon Mar 30 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47588 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47013 * 300.00094 * 3 2 1 6 6 H 1.48509 * 109.47283 * 60.00059 * 3 2 1 7 7 C 1.37875 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53940 * 113.74266 * 278.74530 * 9 7 2 11 11 N 1.47811 * 86.03622 * 222.07997 * 10 9 7 12 12 C 1.34780 * 134.45843 * 204.63946 * 11 10 9 13 13 O 1.21705 * 119.99760 * 179.87217 * 12 11 10 14 14 C 1.46516 * 119.99877 * 359.87315 * 12 11 10 15 15 S 1.76207 * 126.17933 * 359.68580 * 14 12 11 16 16 C 1.70914 * 90.39370 * 179.97438 * 15 14 12 17 17 N 1.29367 * 110.61903 * 0.32077 * 16 15 14 18 18 C 1.31044 * 117.45007 * 359.74794 * 17 16 15 19 19 Cl 1.73609 * 123.05168 * 179.97438 * 18 17 16 20 20 C 1.47588 * 91.04902 * 24.54983 * 11 10 9 21 21 H 0.96996 * 120.00369 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.93921 * 50.33711 * 9 7 2 23 23 H 1.09000 * 113.77366 * 336.34315 * 10 9 7 24 24 H 1.09001 * 113.77240 * 107.74450 * 10 9 7 25 25 H 1.07997 * 124.69737 * 180.02562 * 16 15 14 26 26 H 1.08999 * 113.76895 * 221.15146 * 20 11 10 27 27 H 1.09000 * 113.76895 * 89.75540 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 0.7563 -2.9292 1.3923 11 7 1.1922 -4.2900 1.0141 12 6 0.8430 -5.5339 1.3980 13 8 1.3871 -6.5005 0.8972 14 6 -0.1916 -5.7223 2.4182 15 16 -1.0750 -4.4459 3.2520 16 6 -1.9499 -5.6152 4.1399 17 7 -1.5756 -6.8095 3.8128 18 6 -0.6418 -6.9213 2.9003 19 17 -0.0308 -8.4514 2.3532 20 6 2.1611 -3.7400 0.0461 21 1 -0.4850 0.8400 -0.0004 22 1 0.4836 -2.5466 -0.7730 23 1 1.3275 -2.4975 2.2142 24 1 -0.3213 -2.8327 1.5248 25 1 -2.7069 -5.3884 4.8760 26 1 2.2030 -4.2897 -0.8942 27 1 3.1459 -3.5470 0.4717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855475433.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:26 Heat of formation + Delta-G solvation = 43.158712 kcal Electronic energy + Delta-G solvation = -16048.128416 eV Core-core repulsion = 13153.377029 eV Total energy + Delta-G solvation = -2894.751388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.013 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.98450 -39.17057 -36.97110 -36.42429 -32.78223 -30.87439 -28.99443 -26.23924 -25.38899 -24.97325 -21.59276 -20.05465 -19.36800 -17.88994 -16.87968 -16.36610 -16.04197 -15.31507 -14.70346 -14.67943 -14.31527 -14.26977 -13.27914 -12.65861 -12.39103 -12.01255 -11.78183 -11.66114 -11.36113 -11.06766 -10.90960 -10.88073 -10.53434 -9.99711 -9.78655 -9.61949 -9.32403 -9.12169 -8.88015 -8.68480 -8.00373 -6.27117 -4.33117 0.14431 0.96559 1.39546 2.21449 2.32013 3.17431 3.25916 3.28268 3.31979 3.45080 4.26272 4.33300 4.85653 4.88064 5.04103 5.47213 5.90553 6.03739 6.14331 6.27211 6.38113 6.45706 6.63992 7.28066 7.44033 7.70459 8.04595 8.25928 8.52003 8.70936 9.34511 10.82470 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.005176 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.991820 B = 5407.948467 C = 6120.368261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.038 3.962 10 C 0.095 3.905 11 N -0.635 5.635 12 C 0.597 3.403 13 O -0.532 6.532 14 C -0.265 4.265 15 S 0.249 5.751 16 C 0.008 3.992 17 N -0.473 5.473 18 C 0.165 3.835 19 Cl 0.020 6.980 20 C 0.109 3.891 21 H 0.264 0.736 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.209 0.791 26 H 0.066 0.934 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 -6.500 7.518 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.018 3.982 10 C -0.028 4.028 11 N -0.369 5.369 12 C 0.385 3.615 13 O -0.412 6.412 14 C -0.392 4.392 15 S 0.504 5.496 16 C -0.286 4.286 17 N -0.188 5.188 18 C -0.001 4.001 19 Cl 0.049 6.951 20 C -0.012 4.012 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.226 0.774 26 H 0.085 0.915 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.840 -6.544 7.554 10.707 hybrid contribution 0.506 -0.063 -0.026 0.511 sum -3.334 -6.607 7.528 10.556 Atomic orbital electron populations 1.69943 1.06048 1.27170 1.49002 1.25019 0.94883 0.99429 0.94171 0.86480 0.80231 0.83239 0.77764 1.19540 1.20845 1.20856 1.20992 0.93168 0.89477 1.52182 0.91634 1.20490 0.94177 0.91568 0.91937 1.23997 0.99181 0.76544 1.03047 1.50459 1.40473 1.04198 1.41776 1.16264 0.81541 0.82989 0.80755 1.90827 1.55310 1.39099 1.55978 1.25903 1.08684 0.95690 1.08883 1.84699 1.27900 1.08190 1.28806 1.28687 1.04569 0.91161 1.04188 1.65677 1.13363 1.25318 1.14456 1.21033 0.94913 0.88882 0.95228 1.98418 1.84481 1.25297 1.86928 1.23544 0.93747 0.93388 0.90512 0.92584 0.91546 0.89948 0.91399 0.77437 0.91543 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.78 13.29 55.43 0.74 -22.04 15 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 19.23 29.54 -169.99 -5.02 14.21 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.52 -12.55 8.77 -34.44 -0.30 -12.85 15 8 H 0.07 1.56 7.81 -52.49 -0.41 1.15 15 9 C 0.04 0.83 3.60 -90.85 -0.33 0.50 15 10 C 0.09 1.87 6.92 -2.84 -0.02 1.85 15 11 N -0.64 -12.57 3.61 -179.85 -0.65 -13.21 15 12 C 0.60 11.93 8.01 -12.92 -0.10 11.83 15 13 O -0.53 -11.75 15.89 5.18 0.08 -11.66 15 14 C -0.27 -4.57 6.50 -36.75 -0.24 -4.81 15 15 S 0.25 3.30 19.99 -107.50 -2.15 1.15 15 16 C 0.01 0.09 12.20 51.72 0.63 0.73 15 17 N -0.47 -7.01 10.50 -12.22 -0.13 -7.14 15 18 C 0.17 2.76 7.41 -18.39 -0.14 2.62 15 19 Cl 0.02 0.34 27.38 -51.86 -1.42 -1.08 15 20 C 0.11 2.16 8.39 -2.97 -0.02 2.14 15 21 H 0.26 6.49 8.31 -40.82 -0.34 6.15 15 22 H 0.07 1.60 8.14 -51.93 -0.42 1.18 15 23 H 0.08 1.59 8.09 -51.93 -0.42 1.17 15 24 H 0.07 1.30 6.49 -51.93 -0.34 0.97 15 25 H 0.21 1.42 8.06 -52.49 -0.42 1.00 15 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 27 H 0.08 1.49 8.09 -51.93 -0.42 1.07 15 LS Contribution 271.94 15.07 4.10 4.10 Total: -1.00 -28.21 271.94 -7.06 -35.27 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: -1.99 Total: -3.20 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.62 Total: 3.62 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.04 Total: -42.39 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.15 Total: 1.15 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.42 Total: -1.08 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.21 -7.06 -35.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855475433.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.430 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds