Wall clock time and date at job start Mon Mar 30 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47588 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47013 * 300.00094 * 3 2 1 6 6 H 1.48509 * 109.47283 * 60.00059 * 3 2 1 7 7 C 1.37875 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53940 * 113.74266 * 278.74530 * 9 7 2 11 11 N 1.47811 * 86.03622 * 222.07997 * 10 9 7 12 12 C 1.34780 * 134.45843 * 204.63946 * 11 10 9 13 13 O 1.21705 * 119.99760 * 179.87217 * 12 11 10 14 14 C 1.46516 * 119.99877 * 359.87315 * 12 11 10 15 15 S 1.76207 * 126.17933 * 359.68580 * 14 12 11 16 16 C 1.70914 * 90.39370 * 179.97438 * 15 14 12 17 17 N 1.29367 * 110.61903 * 0.32077 * 16 15 14 18 18 C 1.31044 * 117.45007 * 359.74794 * 17 16 15 19 19 Cl 1.73609 * 123.05168 * 179.97438 * 18 17 16 20 20 C 1.47588 * 91.04902 * 24.54983 * 11 10 9 21 21 H 0.96996 * 120.00369 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.93921 * 50.33711 * 9 7 2 23 23 H 1.09000 * 113.77366 * 336.34315 * 10 9 7 24 24 H 1.09001 * 113.77240 * 107.74450 * 10 9 7 25 25 H 1.07997 * 124.69737 * 180.02562 * 16 15 14 26 26 H 1.08999 * 113.76895 * 221.15146 * 20 11 10 27 27 H 1.09000 * 113.76895 * 89.75540 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 0.7563 -2.9292 1.3923 11 7 1.1922 -4.2900 1.0141 12 6 0.8430 -5.5339 1.3980 13 8 1.3871 -6.5005 0.8972 14 6 -0.1916 -5.7223 2.4182 15 16 -1.0750 -4.4459 3.2520 16 6 -1.9499 -5.6152 4.1399 17 7 -1.5756 -6.8095 3.8128 18 6 -0.6418 -6.9213 2.9003 19 17 -0.0308 -8.4514 2.3532 20 6 2.1611 -3.7400 0.0461 21 1 -0.4850 0.8400 -0.0004 22 1 0.4836 -2.5466 -0.7730 23 1 1.3275 -2.4975 2.2142 24 1 -0.3213 -2.8327 1.5248 25 1 -2.7069 -5.3884 4.8760 26 1 2.2030 -4.2897 -0.8942 27 1 3.1459 -3.5470 0.4717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855475433.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:26 Heat of formation + Delta-G solvation = 25.172359 kcal Electronic energy + Delta-G solvation = -16048.908363 eV Core-core repulsion = 13153.377029 eV Total energy + Delta-G solvation = -2895.531335 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.013 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.32431 -40.57926 -38.56014 -37.67905 -34.62623 -32.24920 -30.52704 -27.61617 -26.98397 -26.51377 -23.06230 -21.46350 -20.69324 -19.32023 -18.63790 -17.74169 -17.51167 -16.78673 -16.36415 -15.87889 -15.80635 -15.41448 -14.87408 -14.26078 -14.02840 -13.36450 -13.30966 -13.13081 -12.89593 -12.77937 -12.54484 -12.23438 -12.15846 -11.49017 -11.31540 -10.92319 -10.77918 -10.74708 -10.53193 -10.05029 -9.57631 -8.14500 -6.25128 -1.01053 -0.19431 0.34146 1.01191 1.15678 1.48198 1.53130 1.62222 1.78679 1.97034 2.48296 3.16026 3.22036 3.57817 3.70595 4.23936 4.38744 4.50535 4.54461 4.65772 4.77091 4.87382 5.01674 5.61165 5.83436 6.17353 6.22312 6.69963 6.82864 6.97424 7.44917 8.95321 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.005176 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.991820 B = 5407.948467 C = 6120.368261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.111 3.889 11 N -0.638 5.638 12 C 0.596 3.404 13 O -0.563 6.563 14 C -0.309 4.309 15 S 0.276 5.724 16 C 0.046 3.954 17 N -0.495 5.495 18 C 0.168 3.832 19 Cl 0.011 6.989 20 C 0.114 3.886 21 H 0.265 0.735 22 H 0.039 0.961 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -5.866 9.165 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.007 3.993 10 C -0.012 4.012 11 N -0.371 5.371 12 C 0.385 3.615 13 O -0.445 6.445 14 C -0.435 4.435 15 S 0.532 5.468 16 C -0.248 4.248 17 N -0.210 5.210 18 C 0.001 3.999 19 Cl 0.040 6.960 20 C -0.007 4.007 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.278 0.722 26 H 0.086 0.914 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.495 -5.896 9.205 11.819 hybrid contribution 0.626 -0.282 -0.487 0.842 sum -3.869 -6.178 8.718 11.364 Atomic orbital electron populations 1.70030 1.07165 1.27825 1.50117 1.25668 0.95551 1.02194 0.94081 0.85566 0.79221 0.79729 0.77479 1.19100 1.21215 1.20460 1.21257 0.93382 0.90406 1.51702 0.91563 1.20389 0.94203 0.91967 0.92738 1.23758 0.99577 0.76262 1.01589 1.50408 1.40501 1.04374 1.41833 1.16576 0.81742 0.82315 0.80897 1.90793 1.56611 1.39728 1.57327 1.25650 1.10063 0.97575 1.10208 1.84572 1.27107 1.07051 1.28089 1.29585 1.03151 0.89405 1.02612 1.65771 1.13705 1.26666 1.14865 1.21201 0.94975 0.88485 0.95264 1.98409 1.84678 1.25867 1.87092 1.23464 0.93940 0.92324 0.90995 0.92550 0.94268 0.89316 0.90897 0.72242 0.91403 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.89 13.29 21.45 0.28 -46.61 15 2 C 0.03 1.27 5.46 84.65 0.46 1.73 15 3 Si 0.95 38.95 29.54 68.60 2.03 40.98 15 4 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.29 -11.77 7.11 99.48 0.71 -11.06 15 6 H -0.28 -11.15 7.11 99.48 0.71 -10.45 15 7 C -0.53 -25.40 8.77 25.60 0.22 -25.18 15 8 H 0.07 3.10 7.81 -2.91 -0.02 3.08 15 9 C 0.03 1.18 3.60 -10.88 -0.04 1.14 15 10 C 0.11 4.30 6.92 86.44 0.60 4.90 15 11 N -0.64 -25.13 3.61 -841.12 -3.04 -28.16 15 12 C 0.60 23.77 8.01 86.40 0.69 24.47 15 13 O -0.56 -25.14 15.89 -4.36 -0.07 -25.21 15 14 C -0.31 -10.34 6.50 24.10 0.16 -10.18 15 15 S 0.28 6.60 19.99 -56.49 -1.13 5.47 15 16 C 0.05 0.87 12.20 130.61 1.59 2.46 15 17 N -0.49 -13.36 10.50 -192.56 -2.02 -15.38 15 18 C 0.17 5.41 7.41 84.48 0.63 6.04 15 19 Cl 0.01 0.36 27.38 -2.72 -0.07 0.29 15 20 C 0.11 4.52 8.39 86.48 0.73 5.25 15 21 H 0.27 12.96 8.31 -92.71 -0.77 12.19 15 22 H 0.04 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.09 3.33 8.09 -2.39 -0.02 3.31 15 24 H 0.07 2.74 6.49 -2.39 -0.02 2.73 15 25 H 0.26 1.96 8.06 -2.91 -0.02 1.94 15 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 27 H 0.09 3.33 8.09 -2.39 -0.02 3.31 15 Total: -1.00 -60.53 271.94 2.23 -58.30 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 1.21 Total: -0.30 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.04 Total: 10.62 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.78 Total: -90.15 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.07 Total: -25.21 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -1.13 Total: 5.47 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.07 Total: 0.29 kcal Total: -60.53 2.23 -58.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855475433.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.475 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds